Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "taxonomic-classification" keyword
kraken-biom 1.0.1
Create BIOM-format tables from Kraken output.1 version - Latest release: almost 8 years ago - 1 dependent repositories - 134 downloads last month - 44 stars on GitHub - 1 maintainer
clark-biom 1.0.0
Create BIOM-format tables from CLARK abundance tables.1 version - Latest release: about 6 years ago - 1 dependent repositories - 30 downloads last month - 1 stars on GitHub - 1 maintainer
taxamatcher 1.0.1
Easy to use taxonomy correlator1 version - Latest release: about 5 years ago - 1 dependent repositories - 17 downloads last month - 0 stars on GitHub - 1 maintainer
flextaxd 0.1.5
Script that allows the creation of custom kraken databases from various sources (NCBI, QIIME, Can...1 version - Latest release: over 4 years ago - 2 dependent repositories - 16 downloads last month - 60 stars on GitHub - 1 maintainer
icb 0.1a3
This library provides a way to parse, manipulate and analyze ICB codes.3 versions - Latest release: over 2 years ago - 1 dependent repositories - 14 downloads last month - 1 stars on GitHub - 1 maintainer
filter-classified-reads 0.2.1
Filter for reads from taxa of interest using Kraken2/Centrifuge classification results3 versions - Latest release: over 3 years ago - 1 dependent repositories - 18 downloads last month - 7 stars on GitHub - 1 maintainer
Top 3.5% on pypi.org
71 versions - Latest release: about 2 months ago - 15 dependent packages - 21 dependent repositories - 3.15 thousand downloads last month - 431 stars on GitHub - 3 maintainers
sourmash 4.8.8
tools for comparing biological sequences with k-mer sketches71 versions - Latest release: about 2 months ago - 15 dependent packages - 21 dependent repositories - 3.15 thousand downloads last month - 431 stars on GitHub - 3 maintainers
sourmash-plugin-containment-search 0.4.3
sourmash plugin for improved output of containment search for metagenomes6 versions - Latest release: 4 months ago - 46 downloads last month - 431 stars on GitHub - 1 maintainer
sourmash-plugin-branchwater 0.9.3
fast command-line extensions for sourmash7 versions - Latest release: 2 months ago - 26 downloads last month - 431 stars on GitHub - 1 maintainer
paroxython 0.7.0
Search Python code for algorithmic features23 versions - Latest release: over 1 year ago - 1 dependent repositories - 245 downloads last month - 33 stars on GitHub - 1 maintainer
meteor 2.0.10
Meteor - A plateform for quantitative metagenomic profiling of complex ecosystems11 versions - Latest release: 24 days ago - 1 dependent repositories - 604 downloads last month - 6 stars on GitHub - 1 maintainer
gtnet 0.1.0
A package for running Genome Taxonomy Network predictions8 versions - Latest release: 3 months ago - 1 dependent repositories - 81 downloads last month - 1 stars on GitHub - 2 maintainers
esmecata 0.4.2
EsMeCaTa: Estimating Metabolic Capabilties from Taxonomy19 versions - Latest release: 3 months ago - 1 dependent repositories - 116 downloads last month - 2 stars on GitHub - 1 maintainer
crest4 4.3.7
The `crest4` python package can automatically assign taxonomic names to DNA sequences obtained fr...32 versions - Latest release: 3 months ago - 1 dependent repositories - 86 downloads last month - 5 stars on GitHub - 1 maintainer
microview 0.11.0
Generate reports from metagenomics data12 versions - Latest release: about 1 month ago - 184 downloads last month - 0 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
7
metagenomics
6
taxonomy
5
python
5
scaled-minhash
3
taxonomic-profiling
3
rust
3
kmer
3
hacktoberfest
3
fracminhash
3
minhash
3
sketching
3
sourmash
3
metagenomic-classification
2
dna-sequences
2
biom-format
2
BIOM
2
education
1
static-analysis
1
algorithmic
1
metaprogramming
1
knowledge-management
1
algorithmic-features
1
algorithms-and-data-structures
1
Metagenomics
1
taxonomic
1
reporting
1
report
1
visualization
1
workflow
1
16s-rrna
1
uniprot
1
proteomes
1
neural-network
1
metagenomic-analysis
1
machine-learning
1
reproducible-research
1
open-science
1
open-source
1
data-format
1
open-data
1
cross-platform
1
microbial-taxonomy
1
microbiome
1
strain-profiling
1
functional-annotation
1
kraken
1
CLARK
1
clark
1
taxon
1
taxa
1
lineage
1
taxonomy-assignment
1
greengenes
1
silva
1
NCBI
1
CanSNPer
1
customization
1
GTDB
1
16s
1
amplicon
1
centrifuge
1
custom-database
1
custom-taxonomy
1
ganon
1
gtdb
1
kraken2
1
krakenuniq
1
ncbi-database
1
ncbi-taxonomy
1
taxonomic-classifications
1
icb
1
icb.definitions
1
finance
1
gics
1
filter_classified_reads
1
bioinformatics-scripts
1
filtering
1