{"id":8418734,"name":"BASiCS","ecosystem":"bioconductor","description":"Bayesian Analysis of Single-Cell Sequencing data","homepage":"https://github.com/catavallejos/BASiCS ","licenses":"GPL-3","normalized_licenses":["GPL-3.0"],"repository_url":"https://github.com/catavallejos/BASiCS","keywords_array":["Bayesian","CellBiology","DifferentialExpression","GeneExpression","ImmunoOncology","Normalization","RNASeq","Sequencing","SingleCell","Software","Transcriptomics"],"namespace":null,"versions_count":7,"first_release_published_at":"2023-10-12T14:12:45.388Z","latest_release_published_at":"2026-05-08T09:47:23.558Z","latest_release_number":"2.24.0","last_synced_at":"2026-09-30T06:22:16.085Z","created_at":"2023-10-12T14:12:45.195Z","updated_at":"2026-09-30T06:22:16.085Z","registry_url":"https://bioconductor.org/packages/BASiCS","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/BASiCS/inst/doc/BASiCS.pdf","metadata":{},"repo_metadata":{"id":32304627,"uuid":"35879656","full_name":"catavallejos/BASiCS","owner":"catavallejos","description":"BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version","archived":false,"fork":false,"pushed_at":"2026-04-14T09:05:34.000Z","size":94906,"stargazers_count":88,"open_issues_count":31,"forks_count":16,"subscribers_count":6,"default_branch":"devel","last_synced_at":"2026-08-25T14:57:20.183Z","etag":null,"topics":["bayesian","bioconductor-package","gene-expression","r","rcpp","rcpparmadillo","scrna-seq","single-cell"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/catavallejos.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2015-05-19T12:05:07.000Z","updated_at":"2026-04-25T11:37:40.000Z","dependencies_parsed_at":"2023-01-14T21:01:15.291Z","dependency_job_id":"37b2f097-ea01-4724-9456-b5299b9f90df","html_url":"https://github.com/catavallejos/BASiCS","commit_stats":{"total_commits":836,"total_committers":19,"mean_commits":44.0,"dds":0.5227272727272727,"last_synced_commit":"1c8eab5410780505edb09664c1de73ce71ac8af5"},"previous_names":[],"tags_count":11,"template":false,"template_full_name":null,"purl":"pkg:github/catavallejos/BASiCS","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/catavallejos","download_url":"https://codeload.github.com/catavallejos/BASiCS/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":36901533,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-08-22T15:14:58.755Z","status":"online","status_checked_at":"2026-08-25T02:00:06.831Z","response_time":104,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"catavallejos","name":"Catalina Vallejos","uuid":"7511093","kind":"user","description":"Group Leader at MRC Human Genetics Unit (Edinburgh) and Fellow of the Alan Turing Institute","email":"","website":"https://vallejosgroup.github.io","location":"Edinburgh, United Kingdom","twitter":null,"company":"MRC Human Genetics Unit (Edinburgh) and @alan-turing-institute","icon_url":"https://avatars.githubusercontent.com/u/7511093?u=e942556c2bb9f4565906e5922d772fa86de27e8d\u0026v=4","repositories_count":16,"last_synced_at":"2024-12-06T20:09:48.864Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/catavallejos","funding_links":[],"total_stars":89,"followers":81,"following":27,"created_at":"2022-11-12T18:49:18.418Z","updated_at":"2024-12-06T20:09:48.864Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/catavallejos","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/catavallejos/repositories"},"tags":[{"name":"v1.7.19","sha":"dedbba609585be4cc315f88708f31ecc9cb9ce97","kind":"commit","published_at":"2019-10-08T16:20:58.000Z","download_url":"https://codeload.github.com/catavallejos/BASiCS/tar.gz/v1.7.19","html_url":"https://github.com/catavallejos/BASiCS/releases/tag/v1.7.19","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/catavallejos/BASiCS@v1.7.19","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/tags/v1.7.19","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/tags/v1.7.19/manifests"},{"name":"v1.7.18","sha":"1eb3d12df3157155827df77970036e02751d89f0","kind":"commit","published_at":"2019-10-07T10:12:50.000Z","download_url":"https://codeload.github.com/catavallejos/BASiCS/tar.gz/v1.7.18","html_url":"https://github.com/catavallejos/BASiCS/releases/tag/v1.7.18","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/catavallejos/BASiCS@v1.7.18","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/tags/v1.7.18","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/tags/v1.7.18/manifests"},{"name":"v1.1.0","sha":"f796960066ac7305048eef45e6ca61b549b430e3","kind":"commit","published_at":"2017-10-30T16:54:33.000Z","download_url":"https://codeload.github.com/catavallejos/BASiCS/tar.gz/v1.1.0","html_url":"https://github.com/catavallejos/BASiCS/releases/tag/v1.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/catavallejos/BASiCS@v1.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/tags/v1.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/tags/v1.1.0/manifests"},{"name":"0.99.7","sha":"5cae6d11bb5d02f03a37743de00f7cafbbc81e3b","kind":"commit","published_at":"2017-10-05T20:40:04.000Z","download_url":"https://codeload.github.com/catavallejos/BASiCS/tar.gz/0.99.7","html_url":"https://github.com/catavallejos/BASiCS/releases/tag/0.99.7","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/catavallejos/BASiCS@0.99.7","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/tags/0.99.7","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/tags/0.99.7/manifests"},{"name":"0.99.0","sha":"7ecd7f25edf9bdac13badd6f85f71f9fc8b0f7af","kind":"commit","published_at":"2017-07-29T19:29:23.000Z","download_url":"https://codeload.github.com/catavallejos/BASiCS/tar.gz/0.99.0","html_url":"https://github.com/catavallejos/BASiCS/releases/tag/0.99.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/catavallejos/BASiCS@0.99.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/tags/0.99.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/tags/0.99.0/manifests"},{"name":"v0.7.30-2","sha":"7ecd7f25edf9bdac13badd6f85f71f9fc8b0f7af","kind":"commit","published_at":"2017-07-29T19:29:23.000Z","download_url":"https://codeload.github.com/catavallejos/BASiCS/tar.gz/v0.7.30-2","html_url":"https://github.com/catavallejos/BASiCS/releases/tag/v0.7.30-2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/catavallejos/BASiCS@v0.7.30-2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/tags/v0.7.30-2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/tags/v0.7.30-2/manifests"},{"name":"v0.7.30","sha":"00d082b011a2f92c36e72c23688499c9558b9453","kind":"commit","published_at":"2017-07-29T18:48:44.000Z","download_url":"https://codeload.github.com/catavallejos/BASiCS/tar.gz/v0.7.30","html_url":"https://github.com/catavallejos/BASiCS/releases/tag/v0.7.30","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/catavallejos/BASiCS@v0.7.30","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/tags/v0.7.30","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/tags/v0.7.30/manifests"},{"name":"v0.3.2","sha":"e28855d82d080fa10e9bbc3420a2ffb26d3a8646","kind":"commit","published_at":"2015-10-23T15:06:50.000Z","download_url":"https://codeload.github.com/catavallejos/BASiCS/tar.gz/v0.3.2","html_url":"https://github.com/catavallejos/BASiCS/releases/tag/v0.3.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/catavallejos/BASiCS@v0.3.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/tags/v0.3.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/tags/v0.3.2/manifests"},{"name":"v0.3.0","sha":"a2e1eaa7157473cd0e64eca49caa2df38a28032b","kind":"commit","published_at":"2015-07-31T11:38:59.000Z","download_url":"https://codeload.github.com/catavallejos/BASiCS/tar.gz/v0.3.0","html_url":"https://github.com/catavallejos/BASiCS/releases/tag/v0.3.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/catavallejos/BASiCS@v0.3.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/tags/v0.3.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/tags/v0.3.0/manifests"},{"name":"v0.2.1","sha":"19eb3355d28e853d3e4438f723358ed1f5dbd17b","kind":"commit","published_at":"2015-07-23T13:11:27.000Z","download_url":"https://codeload.github.com/catavallejos/BASiCS/tar.gz/v0.2.1","html_url":"https://github.com/catavallejos/BASiCS/releases/tag/v0.2.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/catavallejos/BASiCS@v0.2.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/tags/v0.2.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/tags/v0.2.1/manifests"},{"name":"v0.2.0","sha":"d7d3158dc6cfc17e70643bb92a40f960b0eaf01e","kind":"commit","published_at":"2015-07-01T14:24:14.000Z","download_url":"https://codeload.github.com/catavallejos/BASiCS/tar.gz/v0.2.0","html_url":"https://github.com/catavallejos/BASiCS/releases/tag/v0.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/catavallejos/BASiCS@v0.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/tags/v0.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/tags/v0.2.0/manifests"}]},"repo_metadata_updated_at":"2026-08-28T19:12:06.543Z","dependent_packages_count":2,"downloads":42438,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":52.307692307692314,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":17.435897435897438},"purl":"pkg:bioconductor/BASiCS","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/BASiCS","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/BASiCS","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/BASiCS/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2026-08-27T08:56:05.447Z","issues_count":69,"pull_requests_count":39,"avg_time_to_close_issue":26841944.285714287,"avg_time_to_close_pull_request":4397816.6486486485,"issues_closed_count":49,"pull_requests_closed_count":37,"pull_request_authors_count":2,"issue_authors_count":9,"avg_comments_per_issue":2.3333333333333335,"avg_comments_per_pull_request":1.205128205128205,"merged_pull_requests_count":30,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":2,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":171439.5,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":2,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":3.0,"past_year_avg_comments_per_pull_request":1.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":2,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/catavallejos%2FBASiCS/issues","maintainers":[{"login":"alanocallaghan","count":55,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/alanocallaghan"},{"login":"catavallejos","count":35,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/catavallejos"}],"active_maintainers":[{"login":"alanocallaghan","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/alanocallaghan"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/BASiCS/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/BASiCS/version_numbers","latest_version_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/BASiCS/latest_version","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/BASiCS/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/BASiCS/related_packages","codemeta_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/BASiCS/codemeta","maintainers":[{"uuid":"catalina.vallejos@igmm.ed.ac.uk","login":null,"name":"Catalina Vallejos","email":"catalina.vallejos@igmm.ed.ac.uk","url":null,"packages_count":1,"html_url":null,"role":null,"created_at":"2023-11-25T14:05:06.255Z","updated_at":"2023-11-25T14:05:06.255Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/catalina.vallejos@igmm.ed.ac.uk/packages"}]}