{"id":8419491,"name":"GeneTonic","ecosystem":"bioconductor","description":"Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis","homepage":"https://github.com/federicomarini/GeneTonic","licenses":"MIT + file LICENSE","normalized_licenses":["MIT"],"repository_url":"https://github.com/federicomarini/GeneTonic","keywords_array":["Annotation","DifferentialExpression","GO","GUI","GeneExpression","GeneSetEnrichment","Pathways","ReportWriting","ShinyApps","Software","Transcription","Transcriptomics","Visualization"],"namespace":null,"versions_count":7,"first_release_published_at":"2023-10-12T14:35:37.764Z","latest_release_published_at":"2026-05-22T09:48:44.105Z","latest_release_number":"3.6.0","latest_published_release_number":null,"last_synced_at":"2026-10-11T01:32:24.047Z","created_at":"2023-10-12T14:35:37.606Z","updated_at":"2026-10-11T01:32:24.097Z","registry_url":"https://bioconductor.org/packages/GeneTonic","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/GeneTonic/inst/doc/GeneTonic.pdf","metadata":{},"repo_metadata":{"id":36032301,"uuid":"193464295","full_name":"federicomarini/GeneTonic","owner":"federicomarini","description":"Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail","archived":false,"fork":false,"pushed_at":"2026-07-17T09:56:25.000Z","size":136374,"stargazers_count":82,"open_issues_count":20,"forks_count":12,"subscribers_count":3,"default_branch":"devel","last_synced_at":"2026-10-11T01:27:13.017Z","etag":null,"topics":["bioconductor","bioconductor-package","data-exploration","data-visualization","functional-enrichment-analysis","gene-expression","gui","pathway-analysis","r","reproducible-research","rna-seq-analysis","rna-seq-data","shiny","transcriptome","transcriptomics","user-friendly"],"latest_commit_sha":null,"homepage":"https://federicomarini.github.io/GeneTonic","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/federicomarini.png","metadata":{"files":{"readme":"README.Rmd","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2019-06-24T08:21:40.000Z","updated_at":"2026-10-08T11:52:47.000Z","dependencies_parsed_at":"2024-09-12T09:09:25.242Z","dependency_job_id":"62993831-9af8-45d9-9aa5-3e945825e670","html_url":"https://github.com/federicomarini/GeneTonic","commit_stats":{"total_commits":1041,"total_committers":7,"mean_commits":"148.71428571428572","dds":"0.025936599423631135","last_synced_commit":"622a3d013d7dd5f92fd563f92e2be8f83f2c7bf2"},"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/federicomarini/GeneTonic","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/federicomarini%2FGeneTonic","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/federicomarini%2FGeneTonic/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/federicomarini%2FGeneTonic/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/federicomarini%2FGeneTonic/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/federicomarini","download_url":"https://codeload.github.com/federicomarini/GeneTonic/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/federicomarini%2FGeneTonic/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":343680568,"owners_count":38174151,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-10-03T21:59:58.778Z","status":"online","status_checked_at":"2026-10-10T02:00:07.419Z","response_time":65,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"federicomarini","name":"Federico Marini","uuid":"7447478","kind":"user","description":"Virchow Fellow, Bioinformatician @ Institute of Medical Biostatistics, Epidemiology and Informatics, Mainz (@imbeimainz)","email":"","website":null,"location":"Mainz","twitter":"FedeBioinfo","company":"University Medical Center, Mainz","icon_url":"https://avatars.githubusercontent.com/u/7447478?u=93145716f75f552688fc37dccec334ad4e5efe9b\u0026v=4","repositories_count":173,"last_synced_at":"2023-09-09T19:43:11.170Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/federicomarini","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-08T04:05:03.951Z","updated_at":"2023-09-09T19:43:11.781Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/federicomarini","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/federicomarini/repositories"},"tags":[{"name":"v1.5.6-revision","sha":"b9eec47338eb824f21639bc642d6c1774d38a5c3","kind":"commit","published_at":"2021-09-21T18:37:52.000Z","download_url":"https://codeload.github.com/federicomarini/GeneTonic/tar.gz/v1.5.6-revision","html_url":"https://github.com/federicomarini/GeneTonic/releases/tag/v1.5.6-revision","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/federicomarini/GeneTonic@v1.5.6-revision","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/federicomarini%2FGeneTonic/tags/v1.5.6-revision","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/federicomarini%2FGeneTonic/tags/v1.5.6-revision/manifests"}]},"repo_metadata_updated_at":"2026-10-11T01:32:24.097Z","dependent_packages_count":1,"downloads":37067,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":65.36523929471034,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":21.788413098236777},"purl":"pkg:bioconductor/GeneTonic","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/GeneTonic","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/GeneTonic","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/GeneTonic/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2026-10-07T12:20:28.454Z","issues_count":27,"pull_requests_count":47,"avg_time_to_close_issue":7945398.888888889,"avg_time_to_close_pull_request":394349.55555555556,"issues_closed_count":9,"pull_requests_closed_count":45,"pull_request_authors_count":6,"issue_authors_count":22,"avg_comments_per_issue":3.7777777777777777,"avg_comments_per_pull_request":0.8085106382978723,"merged_pull_requests_count":42,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/federicomarini%2Fgenetonic/issues","maintainers":[{"login":"federicomarini","count":38,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/federicomarini"},{"login":"AnnekathrinSilvia","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/AnnekathrinSilvia"},{"login":"edo98811","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/edo98811"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/GeneTonic/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/GeneTonic/version_numbers","latest_version_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/GeneTonic/latest_version","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/GeneTonic/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/GeneTonic/related_packages","codemeta_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/GeneTonic/codemeta","maintainers":[{"uuid":"marinif@uni-mainz.de","login":null,"name":"Federico Marini","email":"marinif@uni-mainz.de","url":null,"packages_count":8,"html_url":null,"role":null,"created_at":"2023-11-01T12:07:25.954Z","updated_at":"2023-11-01T12:07:25.954Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/marinif@uni-mainz.de/packages"}]}