{"id":8419924,"name":"MicrobiotaProcess","ecosystem":"bioconductor","description":"A comprehensive R package for managing and analyzing microbiome and other ecological data within the tidy framework","homepage":"https://github.com/YuLab-SMU/MicrobiotaProcess/ ","licenses":"GPL (\u003e= 3.0)","normalized_licenses":["CNRI-Python-GPL-Compatible"],"repository_url":"https://github.com/YuLab-SMU/MicrobiotaProcess","keywords_array":["FeatureExtraction","Microbiome","MultipleComparison","Software","Visualization"],"namespace":null,"versions_count":11,"first_release_published_at":"2023-10-12T14:45:17.611Z","latest_release_published_at":"2026-05-13T08:32:13.726Z","latest_release_number":"1.24.0","last_synced_at":"2026-06-23T04:15:45.610Z","created_at":"2023-10-12T14:45:17.333Z","updated_at":"2026-06-23T04:15:56.272Z","registry_url":"https://bioconductor.org/packages/MicrobiotaProcess","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/MicrobiotaProcess/inst/doc/MicrobiotaProcess.pdf","metadata":{},"repo_metadata":{"id":37390564,"uuid":"173248159","full_name":"YuLab-SMU/MicrobiotaProcess","owner":"YuLab-SMU","description":":microbe: A comprehensive R package for deep mining microbiome","archived":false,"fork":false,"pushed_at":"2025-09-24T01:23:21.000Z","size":7295,"stargazers_count":190,"open_issues_count":92,"forks_count":35,"subscribers_count":6,"default_branch":"master","last_synced_at":"2025-10-20T14:24:37.239Z","etag":null,"topics":["microbiome","microbiome-analysis","microbiome-data","rstats"],"latest_commit_sha":null,"homepage":"https://www.sciencedirect.com/science/article/pii/S2666675823000164","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/YuLab-SMU.png","metadata":{"files":{"readme":"README.Rmd","changelog":"NEWS.md","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2019-03-01T06:34:04.000Z","updated_at":"2025-09-17T06:28:14.000Z","dependencies_parsed_at":"2023-02-02T10:46:29.775Z","dependency_job_id":"6c6c5f04-8987-4f4b-ad51-3c49b9c6ddce","html_url":"https://github.com/YuLab-SMU/MicrobiotaProcess","commit_stats":{"total_commits":1314,"total_committers":8,"mean_commits":164.25,"dds":"0.013698630136986356","last_synced_commit":"4d308559262ad86c2f8f55f09a378a173e37ab9d"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/YuLab-SMU/MicrobiotaProcess","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YuLab-SMU%2FMicrobiotaProcess","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YuLab-SMU%2FMicrobiotaProcess/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YuLab-SMU%2FMicrobiotaProcess/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YuLab-SMU%2FMicrobiotaProcess/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/YuLab-SMU","download_url":"https://codeload.github.com/YuLab-SMU/MicrobiotaProcess/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/YuLab-SMU%2FMicrobiotaProcess/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":280424208,"owners_count":26328462,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-10-22T02:00:06.515Z","response_time":63,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"YuLab-SMU","name":"Bioinformatics Group @ SMU","uuid":"40430016","kind":"organization","description":"Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University","email":"gcyu1@smu.edu.cn","website":"https://yulab-smu.top","location":"Guangzhou","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/40430016?v=4","repositories_count":76,"last_synced_at":"2023-08-13T16:35:45.877Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/YuLab-SMU","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-07T04:45:23.274Z","updated_at":"2023-08-13T16:35:46.483Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/YuLab-SMU","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/YuLab-SMU/repositories"},"tags":[]},"repo_metadata_updated_at":"2026-06-23T04:15:56.245Z","dependent_packages_count":0,"downloads":null,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":44.74852071005917,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":1.1094674556213018,"forks_count":1.3313609467455623,"docker_downloads_count":null,"average":9.437869822485206},"purl":"pkg:bioconductor/MicrobiotaProcess","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/MicrobiotaProcess","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/MicrobiotaProcess","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/MicrobiotaProcess/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-31T15:20:15.490Z","issues_count":108,"pull_requests_count":3,"avg_time_to_close_issue":2971733.1153846155,"avg_time_to_close_pull_request":8429.333333333334,"issues_closed_count":26,"pull_requests_closed_count":3,"pull_request_authors_count":3,"issue_authors_count":77,"avg_comments_per_issue":2.6203703703703702,"avg_comments_per_pull_request":0.3333333333333333,"merged_pull_requests_count":3,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":10,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":10,"past_year_avg_comments_per_issue":0.0,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/YuLab-SMU%2FMicrobiotaProcess/issues","maintainers":[{"login":"nyzhoulang","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nyzhoulang"},{"login":"xiangpin","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/xiangpin"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/MicrobiotaProcess/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/MicrobiotaProcess/version_numbers","latest_version_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/MicrobiotaProcess/latest_version","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/MicrobiotaProcess/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/MicrobiotaProcess/related_packages","codemeta_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/MicrobiotaProcess/codemeta","maintainers":[{"uuid":"xshuangbin@163.com","login":null,"name":"Shuangbin Xu","email":"xshuangbin@163.com","url":null,"packages_count":3,"html_url":null,"role":null,"created_at":"2023-11-26T15:47:21.380Z","updated_at":"2023-11-26T15:47:21.380Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/xshuangbin@163.com/packages"}]}