{"id":11559211,"name":"TENET","ecosystem":"bioconductor","description":"R package for TENET (Tracing regulatory Element Networks using Epigenetic Traits) to identify key transcription factors","homepage":"https://github.com/rhielab/TENET ","licenses":"GPL-2","normalized_licenses":["GPL-2.0"],"repository_url":"https://github.com/rhielab/TENET","keywords_array":["BiomedicalInformatics","CellBiology","DNAMethylation","DifferentialExpression","DifferentialMethylation","Epigenetics","FunctionalGenomics","GeneExpression","GeneRegulation","GeneTarget","Genetics","HistoneModification","MethylSeq","MethylationArray","MultipleComparison","RNASeq","Sequencing","Software","Survival","Transcription","Transcriptomics","Visualization"],"namespace":null,"versions_count":4,"first_release_published_at":"2025-04-17T10:35:08.971Z","latest_release_published_at":"2026-05-03T05:16:57.221Z","latest_release_number":"1.4.0","latest_published_release_number":null,"last_synced_at":"2026-10-03T17:50:36.331Z","created_at":"2025-04-17T10:34:59.911Z","updated_at":"2026-10-03T17:52:44.023Z","registry_url":"https://bioconductor.org/packages/TENET","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/TENET/inst/doc/TENET.pdf","metadata":{},"repo_metadata":{"id":258018987,"uuid":"775824658","full_name":"rhielab/TENET","owner":"rhielab","description":"R package for TENET (Tracing regulatory Element Networks using Epigenetic Traits) to identify key transcription factors","archived":false,"fork":false,"pushed_at":"2025-10-28T11:21:26.000Z","size":664,"stargazers_count":2,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"devel","last_synced_at":"2026-10-03T09:54:02.637Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/rhielab.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"claude":null,"gemini":null,"cursor":null,"copilot":null,"dco":null,"cla":null,"disclosure":null}},"created_at":"2024-03-22T05:42:40.000Z","updated_at":"2026-10-02T19:59:27.000Z","dependencies_parsed_at":"2026-08-25T14:44:02.037Z","dependency_job_id":null,"html_url":"https://github.com/rhielab/TENET","commit_stats":null,"previous_names":["rhielab/tenet"],"tags_count":9,"template":false,"template_full_name":null,"purl":"pkg:github/rhielab/TENET","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rhielab%2FTENET","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rhielab%2FTENET/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rhielab%2FTENET/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rhielab%2FTENET/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rhielab","download_url":"https://codeload.github.com/rhielab/TENET/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rhielab%2FTENET/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":343072799,"owners_count":37977976,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-08-22T15:14:58.755Z","status":"online","status_checked_at":"2026-10-03T02:00:07.567Z","response_time":59,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"rhielab","name":"Rhie Lab","uuid":"87032249","kind":"organization","description":"Department of Biochemistry and Molecular Medicine, Norris Comprehensive Cancer Center, Keck School of Medicine, University of Southern California","email":null,"website":"https://sites.usc.edu/rhielab/","location":"United States of America","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/87032249?v=4","repositories_count":2,"last_synced_at":"2023-08-05T12:20:41.785Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/rhielab","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-02-22T14:49:50.293Z","updated_at":"2023-08-05T12:20:41.819Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rhielab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rhielab/repositories"},"tags":[{"name":"v0.99.8","sha":"04162f44d755530b6db6fdb0bfc311605d49eae0","kind":"commit","published_at":"2025-04-10T05:02:20.000Z","download_url":"https://codeload.github.com/rhielab/TENET/tar.gz/v0.99.8","html_url":"https://github.com/rhielab/TENET/releases/tag/v0.99.8","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/rhielab/TENET@v0.99.8","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rhielab%2FTENET/tags/v0.99.8","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rhielab%2FTENET/tags/v0.99.8/manifests"},{"name":"v0.99.7","sha":"1461f4e7409dda1c70c70811f12b2c7142e652f2","kind":"commit","published_at":"2025-04-02T01:35:15.000Z","download_url":"https://codeload.github.com/rhielab/TENET/tar.gz/v0.99.7","html_url":"https://github.com/rhielab/TENET/releases/tag/v0.99.7","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/rhielab/TENET@v0.99.7","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rhielab%2FTENET/tags/v0.99.7","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rhielab%2FTENET/tags/v0.99.7/manifests"},{"name":"v0.99.6","sha":"37841f1e3b99baf67bfadf8975a628248a2399f1","kind":"commit","published_at":"2025-03-13T22:56:15.000Z","download_url":"https://codeload.github.com/rhielab/TENET/tar.gz/v0.99.6","html_url":"https://github.com/rhielab/TENET/releases/tag/v0.99.6","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/rhielab/TENET@v0.99.6","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rhielab%2FTENET/tags/v0.99.6","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rhielab%2FTENET/tags/v0.99.6/manifests"},{"name":"v0.99.5","sha":"e82ec0055dc716916bc5df3fcfaeb40ef07a9c9b","kind":"commit","published_at":"2025-02-28T01:33:16.000Z","download_url":"https://codeload.github.com/rhielab/TENET/tar.gz/v0.99.5","html_url":"https://github.com/rhielab/TENET/releases/tag/v0.99.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/rhielab/TENET@v0.99.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rhielab%2FTENET/tags/v0.99.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rhielab%2FTENET/tags/v0.99.5/manifests"},{"name":"v0.99.4","sha":"40d17f36f7addeea756f2b514872ab663392622d","kind":"commit","published_at":"2025-02-27T23:58:29.000Z","download_url":"https://codeload.github.com/rhielab/TENET/tar.gz/v0.99.4","html_url":"https://github.com/rhielab/TENET/releases/tag/v0.99.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/rhielab/TENET@v0.99.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rhielab%2FTENET/tags/v0.99.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rhielab%2FTENET/tags/v0.99.4/manifests"},{"name":"v0.99.3","sha":"bd46d37a6505ee755b7dbba6a50ab7bbfbd2f1ed","kind":"commit","published_at":"2025-02-14T04:50:59.000Z","download_url":"https://codeload.github.com/rhielab/TENET/tar.gz/v0.99.3","html_url":"https://github.com/rhielab/TENET/releases/tag/v0.99.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/rhielab/TENET@v0.99.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rhielab%2FTENET/tags/v0.99.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rhielab%2FTENET/tags/v0.99.3/manifests"},{"name":"v0.99.2","sha":"8cc9ba6a5834f86ea790ba9ac2e788d7801f913a","kind":"commit","published_at":"2025-02-12T03:41:46.000Z","download_url":"https://codeload.github.com/rhielab/TENET/tar.gz/v0.99.2","html_url":"https://github.com/rhielab/TENET/releases/tag/v0.99.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/rhielab/TENET@v0.99.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rhielab%2FTENET/tags/v0.99.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rhielab%2FTENET/tags/v0.99.2/manifests"},{"name":"v0.99.1","sha":"123a25aa2682dc795b25c38487e11b11305fab17","kind":"commit","published_at":"2025-01-17T09:37:36.000Z","download_url":"https://codeload.github.com/rhielab/TENET/tar.gz/v0.99.1","html_url":"https://github.com/rhielab/TENET/releases/tag/v0.99.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/rhielab/TENET@v0.99.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rhielab%2FTENET/tags/v0.99.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rhielab%2FTENET/tags/v0.99.1/manifests"},{"name":"v0.99.0","sha":"1d89cafba53de4190a4ce5a67d03c7dffcfc0d29","kind":"commit","published_at":"2024-10-15T22:54:53.000Z","download_url":"https://codeload.github.com/rhielab/TENET/tar.gz/v0.99.0","html_url":"https://github.com/rhielab/TENET/releases/tag/v0.99.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/rhielab/TENET@v0.99.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rhielab%2FTENET/tags/v0.99.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rhielab%2FTENET/tags/v0.99.0/manifests"}]},"repo_metadata_updated_at":"2026-10-03T17:52:44.023Z","dependent_packages_count":0,"downloads":6982,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":93.2934131736527,"dependent_repos_count":0.0,"dependent_packages_count":30.29940119760479,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":41.19760479041916},"purl":"pkg:bioconductor/TENET","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/TENET","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/TENET","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/TENET/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2026-10-03T01:42:44.020Z","issues_count":0,"pull_requests_count":0,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":0,"pull_requests_closed_count":0,"pull_request_authors_count":0,"issue_authors_count":0,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":0,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/rhielab%2Ftenet/issues","maintainers":[],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/TENET/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/TENET/version_numbers","latest_version_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/TENET/latest_version","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/TENET/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/TENET/related_packages","codemeta_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/TENET/codemeta","maintainers":[{"uuid":"rhielab@gmail.com","login":null,"name":"Rhie Lab at the University of Southern California","email":"rhielab@gmail.com","url":null,"packages_count":1,"html_url":null,"role":null,"created_at":"2025-04-17T10:35:55.889Z","updated_at":"2025-04-17T10:35:55.889Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/rhielab@gmail.com/packages"}]}