{"id":8420933,"name":"TREG","ecosystem":"bioconductor","description":"Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data","homepage":"https://github.com/LieberInstitute/TREG http://research.libd.org/TREG/ ","licenses":"Artistic-2.0","normalized_licenses":["Artistic-2.0"],"repository_url":"https://github.com/LieberInstitute/TREG","keywords_array":["GeneExpression","RNASeq","Sequencing","SingleCell","Software","Transcription","Transcriptomics"],"namespace":null,"versions_count":7,"first_release_published_at":"2023-10-12T15:06:38.591Z","latest_release_published_at":"2026-06-01T14:33:21.124Z","latest_release_number":"1.16.0","last_synced_at":"2026-10-01T11:22:15.928Z","created_at":"2023-10-12T15:06:38.421Z","updated_at":"2026-10-01T11:22:15.928Z","registry_url":"https://bioconductor.org/packages/TREG","install_command":null,"documentation_url":"https://bioconductor.org/packages/release/bioc/vignettes/TREG/inst/doc/TREG.pdf","metadata":{},"repo_metadata":{"id":113732298,"uuid":"391101988","full_name":"LieberInstitute/TREG","owner":"LieberInstitute","description":"Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data","archived":false,"fork":false,"pushed_at":"2026-03-31T18:01:22.000Z","size":25397,"stargazers_count":5,"open_issues_count":2,"forks_count":1,"subscribers_count":4,"default_branch":"devel","last_synced_at":"2026-08-25T14:36:50.349Z","etag":null,"topics":["bioconductor","deconvolution","rnascope","rstats","scrna-seq","smfish","snrna-seq","treg"],"latest_commit_sha":null,"homepage":"http://research.libd.org/TREG/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/LieberInstitute.png","metadata":{"files":{"readme":"README.Rmd","changelog":"NEWS.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":null,"code_of_conduct":".github/CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":".github/SUPPORT.md","governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"claude":null,"gemini":null,"cursor":null,"copilot":null,"dco":null,"cla":null,"disclosure":null}},"created_at":"2021-07-30T14:57:58.000Z","updated_at":"2026-04-20T22:02:55.000Z","dependencies_parsed_at":"2026-08-25T14:44:15.418Z","dependency_job_id":null,"html_url":"https://github.com/LieberInstitute/TREG","commit_stats":{"total_commits":155,"total_committers":7,"mean_commits":"22.142857142857142","dds":"0.32258064516129037","last_synced_commit":"7fcd6df6cc62a4cbddedbff4eb136d552c0dd6b5"},"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/LieberInstitute/TREG","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LieberInstitute%2FTREG","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LieberInstitute%2FTREG/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LieberInstitute%2FTREG/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LieberInstitute%2FTREG/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/LieberInstitute","download_url":"https://codeload.github.com/LieberInstitute/TREG/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LieberInstitute%2FTREG/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":36986102,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-08-22T15:14:58.755Z","status":"online","status_checked_at":"2026-08-30T02:00:08.400Z","response_time":126,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"LieberInstitute","name":"Lieber Institute for Brain Development ","uuid":"18147086","kind":"organization","description":"","email":"info@libd.org","website":"www.libd.org","location":"Baltimore, MD","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/18147086?v=4","repositories_count":40,"last_synced_at":"2023-03-05T19:37:04.789Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/LieberInstitute","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-15T21:41:06.289Z","updated_at":"2023-03-05T19:37:04.857Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/LieberInstitute","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/LieberInstitute/repositories"},"tags":[{"name":"v0.99.1","sha":"c950271b06296e3cd61763c657f7c7b463fc2583","kind":"commit","published_at":"2022-03-21T18:19:59.000Z","download_url":"https://codeload.github.com/LieberInstitute/TREG/tar.gz/v0.99.1","html_url":"https://github.com/LieberInstitute/TREG/releases/tag/v0.99.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/LieberInstitute/TREG@v0.99.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LieberInstitute%2FTREG/tags/v0.99.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LieberInstitute%2FTREG/tags/v0.99.1/manifests"},{"name":"v0_draft","sha":"4f5206de512e5dacaf5a5cb7bf388ab77af7959b","kind":"commit","published_at":"2022-03-16T20:10:42.000Z","download_url":"https://codeload.github.com/LieberInstitute/TREG/tar.gz/v0_draft","html_url":"https://github.com/LieberInstitute/TREG/releases/tag/v0_draft","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/LieberInstitute/TREG@v0_draft","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LieberInstitute%2FTREG/tags/v0_draft","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LieberInstitute%2FTREG/tags/v0_draft/manifests"}]},"repo_metadata_updated_at":"2026-08-31T08:43:36.507Z","dependent_packages_count":0,"downloads":12750,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":93.09417040358744,"dependent_repos_count":0.0,"dependent_packages_count":0.0,"stargazers_count":21.755725190839694,"forks_count":14.440433212996389,"docker_downloads_count":null,"average":25.858065761484703},"purl":"pkg:bioconductor/TREG","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/bioconductor/TREG","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/bioconductor/TREG","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/bioconductor/TREG/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2026-08-30T14:51:30.044Z","issues_count":12,"pull_requests_count":1,"avg_time_to_close_issue":3783895.4,"avg_time_to_close_pull_request":1409.0,"issues_closed_count":10,"pull_requests_closed_count":1,"pull_request_authors_count":1,"issue_authors_count":2,"avg_comments_per_issue":0.75,"avg_comments_per_pull_request":1.0,"merged_pull_requests_count":1,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/lieberinstitute%2Ftreg/issues","maintainers":[{"login":"lcolladotor","count":10,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/lcolladotor"},{"login":"lahuuki","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/lahuuki"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/TREG/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/TREG/version_numbers","latest_version_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/TREG/latest_version","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/TREG/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/TREG/related_packages","codemeta_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/packages/TREG/codemeta","maintainers":[{"uuid":"lahuuki@gmail.com","login":null,"name":"Louise Huuki-Myers","email":"lahuuki@gmail.com","url":null,"packages_count":2,"html_url":null,"role":null,"created_at":"2023-11-25T14:03:52.948Z","updated_at":"2023-11-25T14:03:52.948Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/bioconductor.org/maintainers/lahuuki@gmail.com/packages"}]}