{"id":9101720,"name":"biofsharp","ecosystem":"nuget","description":"Open source bioinformatics and computational biology toolbox written in F#.","homepage":"https://csbiology.github.io/BioFSharp/","licenses":"MIT","normalized_licenses":["MIT"],"repository_url":"https://github.com/csbiology/BioFSharp","keywords_array":["bioinformatics","biostatistics","datascience","biology","dataprocessing","amino-acids","nucleotides","sequence-analysis","F#","FSharp"],"namespace":null,"versions_count":19,"first_release_published_at":"2020-02-19T22:02:29.317Z","latest_release_published_at":"2025-04-25T12:50:26.043Z","latest_release_number":"2.0.0","last_synced_at":"2026-07-24T17:30:06.870Z","created_at":"2024-02-27T08:13:01.797Z","updated_at":"2026-09-22T19:39:56.944Z","registry_url":"https://www.nuget.org/packages/biofsharp/","install_command":"Install-Package biofsharp","documentation_url":null,"metadata":{"license_info":{"type":"expression","text":"MIT","version":null},"license_url":"https://licenses.nuget.org/MIT","require_license_acceptance":false,"icon_url":"https://raw.githubusercontent.com/CSBiology/BioFSharp/master/docsrc/files/img/logo.png","repository":{"type":"git","url":"https://github.com/CSBiology/BioFSharp","branch":null,"commit":"cf946a876a5927574a967f99002c62545ae79b2c"},"development_dependency":false,"serviceable":false,"framework_assemblies":[],"package_types":[],"release_notes":"The new BioFSharp package now bundles the old BioFSharp and BioFSharp.IO packages.\nThe whole package has undergone a major rework. it now contains the following modules:\n- `BioFSharp` - the core data model e.g. BioItems, Sequences, Alignments, etc.\n- `BioFSharp.FileFormats` - data models for and functions to work with biological file formats\n- `BioFSharp.CLIArgs` - DSLs for commonly used bioinformatic CLI tools such as BLAST or ClustalO. These DSLs are designed to be extended in the `BioFSharp.BioContainers` package to run the tools in containerized form.\n- `BioFSharp.IO` - Parsers and writers for the datatypes defined in `BioFSharp.FileFormats`\n- `BioFSharp.CLITools` - functions to execute CLITools using the DSLs defined in `BioFSharp.CLIArgs`\nAdditions:**\nBioFSharp**:\n[Breaking] [Conversion extensions for BioCollections]()\n[Breaking] [Tagged Sequence and Phylogenetic Tree have been reworked as top level types](https://github.com/CSBiology/BioFSharp/commit/aec8232dd7725cdbb99a038ebe0c99f26922f31a)\n[Add functionality to construct phylogenetic trees from clustered data or raw sequence data](https://github.com/CSBiology/BioFSharp/commit/aec8232dd7725cdbb99a038ebe0c99f26922f31a)","dependency_summary":{"total_dependency_groups":1,"target_frameworks":[".NETStandard2.0"],"total_dependencies":4}},"repo_metadata":{"id":38616736,"uuid":"63319449","full_name":"BioFSharp/BioFSharp","owner":"BioFSharp","description":"Open source bioinformatics and computational biology toolbox written in F#. This is the core package containing type models and parsers/writers.","archived":false,"fork":false,"pushed_at":"2026-01-15T09:01:02.000Z","size":326358,"stargazers_count":109,"open_issues_count":25,"forks_count":34,"subscribers_count":13,"default_branch":"main","last_synced_at":"2026-08-11T23:55:49.849Z","etag":null,"topics":["amino-acids","biocontainers","bioinformatics","bioinformatics-containers","biology","biostatistics","dataprocessing","datascience","docker","fsharp","nucleotides","sequence-analysis"],"latest_commit_sha":null,"homepage":"https://www.biofsharp.com/BioFSharp/","language":"F#","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/BioFSharp.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2016-07-14T08:52:06.000Z","updated_at":"2026-06-18T17:10:26.000Z","dependencies_parsed_at":"2023-01-29T14:00:47.030Z","dependency_job_id":"049cc12b-debd-46e1-a048-066d48adc49c","html_url":"https://github.com/BioFSharp/BioFSharp","commit_stats":null,"previous_names":["biofsharp/biofsharp","csbiology/biofsharp"],"tags_count":11,"template":false,"template_full_name":null,"purl":"pkg:github/BioFSharp/BioFSharp","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BioFSharp","download_url":"https://codeload.github.com/BioFSharp/BioFSharp/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":341189360,"owners_count":37557424,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-08-22T15:14:58.755Z","status":"online","status_checked_at":"2026-09-21T02:00:06.232Z","response_time":53,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"BioFSharp","name":"BioFSharp","uuid":"81023449","kind":"organization","description":"Open source bioinformatics and computational biology toolbox written in F#.","email":null,"website":null,"location":null,"twitter":"biofsharp","company":null,"icon_url":"https://avatars.githubusercontent.com/u/81023449?v=4","repositories_count":1,"last_synced_at":"2025-04-07T14:39:32.887Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/BioFSharp","funding_links":[],"total_stars":0,"followers":0,"following":0,"created_at":"2025-04-07T14:39:32.908Z","updated_at":"2025-04-07T14:39:32.908Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BioFSharp","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BioFSharp/repositories"},"tags":[{"name":"2.0.0","sha":"cf946a876a5927574a967f99002c62545ae79b2c","kind":"commit","published_at":"2025-04-25T12:46:23.000Z","download_url":"https://codeload.github.com/BioFSharp/BioFSharp/tar.gz/2.0.0","html_url":"https://github.com/BioFSharp/BioFSharp/releases/tag/2.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/BioFSharp/BioFSharp@2.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/tags/2.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/tags/2.0.0/manifests"},{"name":"2.0.0-preview.3","sha":"056184fd4f015fc4b2430694f892eb0ed0c10825","kind":"commit","published_at":"2022-05-11T14:35:54.000Z","download_url":"https://codeload.github.com/BioFSharp/BioFSharp/tar.gz/2.0.0-preview.3","html_url":"https://github.com/BioFSharp/BioFSharp/releases/tag/2.0.0-preview.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/BioFSharp/BioFSharp@2.0.0-preview.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/tags/2.0.0-preview.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/tags/2.0.0-preview.3/manifests"},{"name":"2.0.0-preview.2","sha":"83cb219ac29b0aaf438594562110998eb9168d3e","kind":"commit","published_at":"2022-02-13T19:12:35.000Z","download_url":"https://codeload.github.com/BioFSharp/BioFSharp/tar.gz/2.0.0-preview.2","html_url":"https://github.com/BioFSharp/BioFSharp/releases/tag/2.0.0-preview.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/BioFSharp/BioFSharp@2.0.0-preview.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/tags/2.0.0-preview.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/tags/2.0.0-preview.2/manifests"},{"name":"2.0.0-preview.1","sha":"c2e0f437494f36d02dd637ddd7dbfe03218c1e69","kind":"commit","published_at":"2022-01-26T09:04:14.000Z","download_url":"https://codeload.github.com/BioFSharp/BioFSharp/tar.gz/2.0.0-preview.1","html_url":"https://github.com/BioFSharp/BioFSharp/releases/tag/2.0.0-preview.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/BioFSharp/BioFSharp@2.0.0-preview.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/tags/2.0.0-preview.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/tags/2.0.0-preview.1/manifests"},{"name":"2.0.0-beta6","sha":"1079428c3d58fba00e801bde5d02e4c9ad69ab6e","kind":"commit","published_at":"2021-05-10T09:51:14.000Z","download_url":"https://codeload.github.com/BioFSharp/BioFSharp/tar.gz/2.0.0-beta6","html_url":"https://github.com/BioFSharp/BioFSharp/releases/tag/2.0.0-beta6","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/BioFSharp/BioFSharp@2.0.0-beta6","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/tags/2.0.0-beta6","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/tags/2.0.0-beta6/manifests"},{"name":"1.2.0","sha":"4e1bf259b5c60e07fc7627bd88380669fa2fd4d4","kind":"commit","published_at":"2020-04-10T16:31:54.000Z","download_url":"https://codeload.github.com/BioFSharp/BioFSharp/tar.gz/1.2.0","html_url":"https://github.com/BioFSharp/BioFSharp/releases/tag/1.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/BioFSharp/BioFSharp@1.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/tags/1.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/tags/1.2.0/manifests"},{"name":"1.1.0","sha":"0091061dd6dc5ff2b78adc08ae76626b19e758f9","kind":"commit","published_at":"2020-03-23T10:22:26.000Z","download_url":"https://codeload.github.com/BioFSharp/BioFSharp/tar.gz/1.1.0","html_url":"https://github.com/BioFSharp/BioFSharp/releases/tag/1.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/BioFSharp/BioFSharp@1.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/tags/1.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/tags/1.1.0/manifests"},{"name":"1.0.03","sha":"af41feb27e6707c8928b903c2c541b452e829b74","kind":"commit","published_at":"2020-02-26T23:00:09.000Z","download_url":"https://codeload.github.com/BioFSharp/BioFSharp/tar.gz/1.0.03","html_url":"https://github.com/BioFSharp/BioFSharp/releases/tag/1.0.03","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/BioFSharp/BioFSharp@1.0.03","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/tags/1.0.03","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/tags/1.0.03/manifests"},{"name":"1.0.02","sha":"66cdf16e24e67d9ed4a4a2e3ccf7802b593ece8c","kind":"commit","published_at":"2020-02-19T21:56:04.000Z","download_url":"https://codeload.github.com/BioFSharp/BioFSharp/tar.gz/1.0.02","html_url":"https://github.com/BioFSharp/BioFSharp/releases/tag/1.0.02","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/BioFSharp/BioFSharp@1.0.02","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/tags/1.0.02","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/tags/1.0.02/manifests"},{"name":"0.1.0","sha":"7a9bdc365bcbc06fc416f75cf71f8a751c16a923","kind":"commit","published_at":"2019-05-30T15:10:53.000Z","download_url":"https://codeload.github.com/BioFSharp/BioFSharp/tar.gz/0.1.0","html_url":"https://github.com/BioFSharp/BioFSharp/releases/tag/0.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/BioFSharp/BioFSharp@0.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/tags/0.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/tags/0.1.0/manifests"},{"name":"0.0.15","sha":"ba5997a324e199b98e7b656270f4a7e26a081042","kind":"commit","published_at":"2019-03-07T09:26:22.000Z","download_url":"https://codeload.github.com/BioFSharp/BioFSharp/tar.gz/0.0.15","html_url":"https://github.com/BioFSharp/BioFSharp/releases/tag/0.0.15","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/BioFSharp/BioFSharp@0.0.15","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/tags/0.0.15","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/tags/0.0.15/manifests"}]},"repo_metadata_updated_at":"2026-09-22T19:39:56.943Z","dependent_packages_count":8,"downloads":36230,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":11.022858224451507,"dependent_repos_count":10.161582250766312,"dependent_packages_count":13.885856079404466,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":11.690098851540762},"purl":"pkg:nuget/biofsharp","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/nuget/biofsharp","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/nuget/biofsharp","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/nuget/biofsharp/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2026-09-21T05:52:15.045Z","issues_count":61,"pull_requests_count":47,"avg_time_to_close_issue":43285678.333333336,"avg_time_to_close_pull_request":2027313.8863636365,"issues_closed_count":36,"pull_requests_closed_count":44,"pull_request_authors_count":15,"issue_authors_count":10,"avg_comments_per_issue":1.2786885245901638,"avg_comments_per_pull_request":0.574468085106383,"merged_pull_requests_count":37,"bot_issues_count":0,"bot_pull_requests_count":1,"past_year_issues_count":4,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":0.5,"past_year_avg_comments_per_pull_request":2.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioFSharp%2FBioFSharp/issues","maintainers":[{"login":"kMutagene","count":47,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/kMutagene"},{"login":"ZimmerD","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ZimmerD"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/nuget.org/packages/biofsharp/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/nuget.org/packages/biofsharp/version_numbers","latest_version_url":"https://packages.ecosyste.ms/api/v1/registries/nuget.org/packages/biofsharp/latest_version","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/nuget.org/packages/biofsharp/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/nuget.org/packages/biofsharp/related_packages","codemeta_url":"https://packages.ecosyste.ms/api/v1/registries/nuget.org/packages/biofsharp/codemeta","maintainers":[{"uuid":"CSBiology","login":"CSBiology","name":null,"email":null,"url":null,"packages_count":94,"html_url":"https://www.nuget.org/profiles/CSBiology","role":null,"created_at":"2024-02-27T08:13:26.544Z","updated_at":"2024-02-27T08:13:26.544Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/nuget.org/maintainers/CSBiology/packages"}]}