{"id":11676894,"name":"github.com/GoekeLab/bambu","ecosystem":"go","description":null,"homepage":null,"licenses":"gpl-3.0","normalized_licenses":["GPL-3.0"],"repository_url":"https://github.com/GoekeLab/bambu","keywords_array":[],"namespace":null,"versions_count":6,"first_release_published_at":"2020-05-29T06:45:09.000Z","latest_release_published_at":"2026-01-15T09:56:41.000Z","latest_release_number":"v3.12.1+incompatible","last_synced_at":"2026-05-20T03:45:49.621Z","created_at":"2025-05-23T10:07:51.163Z","updated_at":"2026-05-20T03:45:49.621Z","registry_url":"https://pkg.go.dev/github.com/GoekeLab/bambu","install_command":"go get github.com/GoekeLab/bambu","documentation_url":"https://pkg.go.dev/github.com/GoekeLab/bambu#section-documentation","metadata":{},"repo_metadata":{"id":37292316,"uuid":"238860759","full_name":"GoekeLab/bambu","owner":"GoekeLab","description":"Reference-guided transcript discovery and quantification for long read RNA-Seq data ","archived":false,"fork":false,"pushed_at":"2025-08-20T01:28:56.000Z","size":576252,"stargazers_count":217,"open_issues_count":57,"forks_count":24,"subscribers_count":6,"default_branch":"devel","last_synced_at":"2025-09-08T12:47:32.973Z","etag":null,"topics":["bambu","bioconductor","long-reads","nanopore","nanopore-sequencing","r","rna-seq","rna-seq-analysis","transcript-quantification","transcript-reconstruction","transcriptomics"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/GoekeLab.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2020-02-07T06:47:42.000Z","updated_at":"2025-09-04T01:38:17.000Z","dependencies_parsed_at":"2023-02-14T14:45:28.294Z","dependency_job_id":"0bee5526-a96e-4d52-91fd-03aaabdeeaee","html_url":"https://github.com/GoekeLab/bambu","commit_stats":{"total_commits":1844,"total_committers":15,"mean_commits":"122.93333333333334","dds":0.4945770065075922,"last_synced_commit":"42dbb3908f588a571093c9122c66326b3ef16a4d"},"previous_names":[],"tags_count":5,"template":false,"template_full_name":null,"purl":"pkg:github/GoekeLab/bambu","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GoekeLab%2Fbambu","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GoekeLab%2Fbambu/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GoekeLab%2Fbambu/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GoekeLab%2Fbambu/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/GoekeLab","download_url":"https://codeload.github.com/GoekeLab/bambu/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GoekeLab%2Fbambu/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274202820,"owners_count":25240377,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"GoekeLab","name":"Göke Lab","uuid":"46366103","kind":"organization","description":"Computational Transcriptomics - Third Generation Sequencing","email":null,"website":"www.jglab.org","location":"Genome Insitute of Singapore","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/46366103?v=4","repositories_count":9,"last_synced_at":"2023-03-04T17:33:44.138Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/GoekeLab","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-14T21:49:17.674Z","updated_at":"2023-03-04T17:33:44.152Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/GoekeLab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/GoekeLab/repositories"},"tags":[{"name":"v3.2.4","sha":"0d27991ce05374394ab95e07cd7e20607858ec17","kind":"commit","published_at":"2023-06-14T08:34:24.000Z","download_url":"https://codeload.github.com/GoekeLab/bambu/tar.gz/v3.2.4","html_url":"https://github.com/GoekeLab/bambu/releases/tag/v3.2.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/GoekeLab/bambu@v3.2.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GoekeLab%2Fbambu/tags/v3.2.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GoekeLab%2Fbambu/tags/v3.2.4/manifests"},{"name":"v2.0.0","sha":"66f1ce3cb1a3eb931ebcb1095c58f2f3aaa5ae80","kind":"commit","published_at":"2021-10-26T17:04:10.000Z","download_url":"https://codeload.github.com/GoekeLab/bambu/tar.gz/v2.0.0","html_url":"https://github.com/GoekeLab/bambu/releases/tag/v2.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/GoekeLab/bambu@v2.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GoekeLab%2Fbambu/tags/v2.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GoekeLab%2Fbambu/tags/v2.0.0/manifests"},{"name":"v0.3.0","sha":"0458b3b932c4696330ad6420b0f4982c377133a4","kind":"commit","published_at":"2020-07-28T06:04:42.000Z","download_url":"https://codeload.github.com/GoekeLab/bambu/tar.gz/v0.3.0","html_url":"https://github.com/GoekeLab/bambu/releases/tag/v0.3.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/GoekeLab/bambu@v0.3.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GoekeLab%2Fbambu/tags/v0.3.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GoekeLab%2Fbambu/tags/v0.3.0/manifests"},{"name":"v0.2.0","sha":"37901f961d5fe1cd70c22361f2027deb68de3a80","kind":"tag","published_at":"2020-06-18T10:26:25.000Z","download_url":"https://codeload.github.com/GoekeLab/bambu/tar.gz/v0.2.0","html_url":"https://github.com/GoekeLab/bambu/releases/tag/v0.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/GoekeLab/bambu@v0.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GoekeLab%2Fbambu/tags/v0.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GoekeLab%2Fbambu/tags/v0.2.0/manifests"},{"name":"v0.1.0","sha":"5fa25de8130d6086103dd70efb3f7b8036e160b3","kind":"tag","published_at":"2020-05-29T06:49:03.000Z","download_url":"https://codeload.github.com/GoekeLab/bambu/tar.gz/v0.1.0","html_url":"https://github.com/GoekeLab/bambu/releases/tag/v0.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/GoekeLab/bambu@v0.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GoekeLab%2Fbambu/tags/v0.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GoekeLab%2Fbambu/tags/v0.1.0/manifests"}]},"repo_metadata_updated_at":"2025-09-09T16:36:23.040Z","dependent_packages_count":0,"downloads":null,"downloads_period":null,"dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":5.825186304275193,"dependent_packages_count":5.4589533387888975,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":5.642069821532045},"purl":"pkg:golang/github.com/%21goeke%21lab/bambu","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/go/github.com/GoekeLab/bambu","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/go/github.com/GoekeLab/bambu","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/go/github.com/GoekeLab/bambu/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-31T11:01:20.332Z","issues_count":38,"pull_requests_count":33,"avg_time_to_close_issue":7545563.6,"avg_time_to_close_pull_request":2438900.0,"issues_closed_count":10,"pull_requests_closed_count":23,"pull_request_authors_count":4,"issue_authors_count":30,"avg_comments_per_issue":2.8157894736842106,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":19,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":35,"past_year_pull_requests_count":33,"past_year_avg_time_to_close_issue":2790881.75,"past_year_avg_time_to_close_pull_request":2438900.0,"past_year_issues_closed_count":8,"past_year_pull_requests_closed_count":23,"past_year_pull_request_authors_count":4,"past_year_issue_authors_count":29,"past_year_avg_comments_per_issue":2.0,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":19,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/GoekeLab%2Fbambu/issues","maintainers":[{"login":"SuiYue-2308","count":23,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/SuiYue-2308"},{"login":"cying111","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/cying111"},{"login":"lingminhao","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/lingminhao"},{"login":"andredsim","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/andredsim"}],"active_maintainers":[{"login":"SuiYue-2308","count":23,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/SuiYue-2308"},{"login":"lingminhao","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/lingminhao"},{"login":"cying111","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/cying111"},{"login":"andredsim","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/andredsim"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2FGoekeLab%2Fbambu/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2FGoekeLab%2Fbambu/version_numbers","latest_version_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2FGoekeLab%2Fbambu/latest_version","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2FGoekeLab%2Fbambu/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2FGoekeLab%2Fbambu/related_packages","codemeta_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2FGoekeLab%2Fbambu/codemeta","maintainers":[]}