{"id":2714617,"name":"dotplot","ecosystem":"pypi","description":"Small bioinformatic package for dotplot's generation (in command line and in GUI)","homepage":"https://github.com/kn-bibs/dotplot","licenses":"LGPL-3.0","normalized_licenses":["LGPL-3.0"],"repository_url":"https://github.com/kn-bibs/dotplot","keywords_array":["dotplot"],"namespace":null,"versions_count":5,"first_release_published_at":"2017-01-19T22:45:38.000Z","latest_release_published_at":"2017-05-25T22:49:01.000Z","latest_release_number":"0.4.5","last_synced_at":"2026-04-12T20:33:16.383Z","created_at":"2022-04-10T10:48:06.702Z","updated_at":"2026-04-12T20:33:16.384Z","registry_url":"https://pypi.org/project/dotplot/","install_command":"pip install dotplot --index-url https://pypi.org/simple","documentation_url":"https://dotplot.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["Development Status :: 3 - Alpha","Environment :: Console","Environment :: X11 Applications :: Qt","Intended Audience :: Education","Intended Audience :: Science/Research","License :: OSI Approved :: GNU Lesser General Public License v3 (LGPLv3)","Operating System :: Microsoft :: Windows","Operating System :: POSIX :: Linux","Programming Language :: Python :: 3.5","Programming Language :: Python :: 3.6","Topic :: Scientific/Engineering :: Bio-Informatics","Topic :: Utilities"],"normalized_name":"dotplot","project_status":null},"repo_metadata":{"id":57423737,"uuid":"57074545","full_name":"kn-bioinf/dotplot","owner":"kn-bioinf","description":"Simple visualisation tool for sequences' similarity in bioinformatics","archived":false,"fork":false,"pushed_at":"2018-04-12T08:49:51.000Z","size":215,"stargazers_count":13,"open_issues_count":10,"forks_count":2,"subscribers_count":6,"default_branch":"master","last_synced_at":"2025-09-25T10:55:03.965Z","etag":null,"topics":["bioinformatics","dotplot","gene-similarity","protein-sequence","visualisation"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"lgpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/kn-bioinf.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2016-04-25T20:35:14.000Z","updated_at":"2023-05-06T05:20:49.000Z","dependencies_parsed_at":"2022-08-30T03:50:14.459Z","dependency_job_id":null,"html_url":"https://github.com/kn-bioinf/dotplot","commit_stats":null,"previous_names":["kn-bioinf/dotplot","kn-bibs/dotplot"],"tags_count":9,"template":false,"template_full_name":null,"purl":"pkg:github/kn-bioinf/dotplot","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kn-bioinf%2Fdotplot","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kn-bioinf%2Fdotplot/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kn-bioinf%2Fdotplot/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kn-bioinf%2Fdotplot/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/kn-bioinf","download_url":"https://codeload.github.com/kn-bioinf/dotplot/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kn-bioinf%2Fdotplot/sbom","scorecard":{"id":564236,"data":{"date":"2025-08-11","repo":{"name":"github.com/kn-bibs/dotplot","commit":"c32da4f892e3c2fb16243575626e3e21bb4b701b"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":2.4,"checks":[{"name":"Code-Review","score":0,"reason":"Found 0/26 approved changesets -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Dangerous-Workflow","score":-1,"reason":"no workflows found","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Token-Permissions","score":-1,"reason":"No tokens found","details":null,"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Pinned-Dependencies","score":-1,"reason":"no dependencies found","details":null,"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENCE:0","Info: FSF or OSI recognized license: GNU Lesser General Public License v3.0: LICENCE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Vulnerabilities","score":5,"reason":"5 existing vulnerabilities detected","details":["Warn: Project is vulnerable to: PYSEC-2014-14 / GHSA-652x-xj99-gmcc","Warn: Project is vulnerable to: GHSA-9hjg-9r4m-mvj7","Warn: Project is vulnerable to: GHSA-9wx4-h78v-vm56","Warn: Project is vulnerable to: PYSEC-2014-13 / GHSA-cfj3-7x9c-4p3h","Warn: Project is vulnerable to: PYSEC-2018-28 / GHSA-x84v-xcm2-53pg"],"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 5 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-20T14:31:23.989Z","repository_id":57423737,"created_at":"2025-08-20T14:31:23.989Z","updated_at":"2025-08-20T14:31:23.989Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":276905421,"owners_count":25725558,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-25T02:00:09.612Z","response_time":80,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"tags":[]},"repo_metadata_updated_at":"2026-03-12T02:18:39.916Z","dependent_packages_count":0,"downloads":42,"downloads_period":"last-month","dependent_repos_count":1,"rankings":{"downloads":26.962143083223832,"dependent_repos_count":21.71838761843193,"dependent_packages_count":10.002282794063202,"stargazers_count":15.584051868831706,"forks_count":19.12712860954822,"docker_downloads_count":null,"average":18.678798794819777},"purl":"pkg:pypi/dotplot","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/dotplot","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/dotplot","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/dotplot/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-26T11:18:03.661Z","issues_count":29,"pull_requests_count":25,"avg_time_to_close_issue":2763869.3684210526,"avg_time_to_close_pull_request":461077.04,"issues_closed_count":19,"pull_requests_closed_count":25,"pull_request_authors_count":11,"issue_authors_count":7,"avg_comments_per_issue":0.6896551724137931,"avg_comments_per_pull_request":0.68,"merged_pull_requests_count":24,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/kn-bibs%2Fdotplot/issues","maintainers":[{"login":"krassowski","count":23,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/krassowski"},{"login":"maciosz","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/maciosz"},{"login":"pjanek","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/pjanek"},{"login":"magickris93","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/magickris93"},{"login":"Behoston","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Behoston"},{"login":"pasliwa","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/pasliwa"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/dotplot/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/dotplot/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/dotplot/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/dotplot/related_packages","codemeta_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/dotplot/codemeta","maintainers":[{"uuid":"kn_bibs","login":"kn_bibs","name":null,"email":null,"url":null,"packages_count":1,"html_url":"https://pypi.org/user/kn_bibs/","role":null,"created_at":"2022-12-26T15:03:07.997Z","updated_at":"2022-12-26T15:03:07.997Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/kn_bibs/packages"}]}