Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "ChIPchip" keyword
sevenC 1.22.0
Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs3 versions - Latest release: 6 months ago - 7.5 thousand downloads total - 12 stars on GitHub - 1 maintainer
ChIPXpress 1.46.0
ChIPXpress: enhanced transcription factor target gene identification from ChIP-seq and ChIP-chip ...3 versions - Latest release: 7 months ago - 16.7 thousand downloads total - 1 maintainer
iChip 1.56.0
Bayesian Modeling of ChIP-chip Data Through Hidden Ising Models3 versions - Latest release: 7 months ago - 24.4 thousand downloads total - 1 maintainer
les 1.52.0
Identifying Differential Effects in Tiling Microarray Data3 versions - Latest release: 7 months ago - 1 dependent package - 25.5 thousand downloads total - 1 maintainer
Top 3.6% on bioconductor.org
3 versions - Latest release: 25 days ago - 10 dependent packages - 106 thousand downloads total - 1 maintainer
motifStack 1.48.0
Plot stacked logos for single or multiple DNA, RNA and amino acid sequence3 versions - Latest release: 25 days ago - 10 dependent packages - 106 thousand downloads total - 1 maintainer
Top 3.4% on bioconductor.org
3 versions - Latest release: 26 days ago - 1 dependent package - 89.7 thousand downloads total - 1 maintainer
rGADEM 2.52.0
de novo motif discovery3 versions - Latest release: 26 days ago - 1 dependent package - 89.7 thousand downloads total - 1 maintainer
Top 3.0% on bioconductor.org
4 versions - Latest release: 26 days ago - 8 dependent packages - 267 thousand downloads total - 4 maintainers
ChIPpeakAnno 3.38.0
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments, or any expe...4 versions - Latest release: 26 days ago - 8 dependent packages - 267 thousand downloads total - 4 maintainers
Related Keywords
Software
7
ChIPSeq
5
Microarray
4
Annotation
2
Sequencing
2
DataImport
2
sequence-motif
1
transcription-factors
1
AgilentChip
1
OneChannel
1
DNAMethylation
1
DifferentialExpression
1
Transcription
1
Alignment
1
MotifAnnotation
1
SequenceMatching
1
Visualization
1
MotifDiscovery
1
r-package
1
prediction
1
hi-c
1
chromatin-interaction
1
chip-seq
1
3d-genome
1
Regression
1
HiC
1
FunctionalGenomics
1
Epigenetics
1
DNA3DStructure
1
Coverage
1
Classification
1