Ecosyste.ms: Packages

Software 166 Sequencing 146 RNASeq 49 GeneExpression 44 DataImport 43 ImmunoOncology 39 Alignment 35 Visualization 34 ChIPSeq 33 QualityControl 32 Genetics 31 Transcription 26 DifferentialExpression 26 Transcriptomics 23 Normalization 22 Preprocessing 19 SingleCell 19 GenomeAnnotation 18 Annotation 16 DNAMethylation 16 MultipleComparison 15 DifferentialMethylation 15 bioconductor 15 Epigenetics 14 GeneRegulation 14 r 13 AlternativeSplicing 13 Infrastructure 13 CopyNumberVariation 13 FunctionalGenomics 13 Clustering 12 Regression 11 DataRepresentation 11 rstats 10 Bayesian 10 DNASeq 10 PeakDetection 9 Microarray 9 DifferentialSplicing 8 ATACSeq 8 SequenceMatching 8 MethylSeq 8 WholeGenome 7 GenomicVariation 7 StatisticalMethod 7 Classification 6 BatchEffect 6 bioinformatics 6 BiologicalQuestion 6 NucleosomePositioning 6 FeatureExtraction 6 GeneSetEnrichment 6 DifferentialPeakCalling 6 WorkflowStep 6 SNP 5 VariantAnnotation 5 KEGG 5 RiboSeq 5 ChipOnChip 4 rnaseq 4 GO 4 HiddenMarkovModel 4 Network 4 derfinder 4 bioconductor-package 4 VariantDetection 4 SystemsBiology 4 GeneticVariability 4 OneChannel 4 r-package 3 GeneTarget 3 Pathways 3 BiomedicalInformatics 3 SAGE 3 TargetedResequencing 3 HiC 3 Proteomics 3 TimeCourse 3 human 3 annotation-agnostic 3 FunctionalPrediction 3 GenomeAssembly 3 rna-seq-analysis 3 ReportWriting 2 GUI 2 TwoChannel 2 MethylationArray 2 rna-seq 2 deseq2 2 exon 2 gene 2 chip-seq 2 count 2 recount 2 junction 2 Microbiome 2 NetworkEnrichment 2 illumina 2 diagnostics 2 genomics-visualization 2