Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "DNA3DStructure" keyword
HiContacts 1.6.0
Analysing cool files in R with HiContacts3 versions - Latest release: 23 days ago - 2 dependent packages - 2.98 thousand downloads total - 6 stars on GitHub - 1 maintainer
sevenC 1.22.0
Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs3 versions - Latest release: 6 months ago - 7.5 thousand downloads total - 12 stars on GitHub - 1 maintainer
idr2d 1.16.0
Irreproducible Discovery Rate for Genomic Interactions Data3 versions - Latest release: 7 months ago - 5.25 thousand downloads total - 1 maintainer
HiCExperiment 1.2.0
Bioconductor class for interacting with Hi-C files in R3 versions - Latest release: 7 months ago - 2 dependent packages - 2.93 thousand downloads total - 4 stars on GitHub - 1 maintainer
DNAshapeR 1.30.0
High-throughput prediction of DNA shape features3 versions - Latest release: 7 months ago - 15.5 thousand downloads total - 1 maintainer
FitHiC 1.28.0
Confidence estimation for intra-chromosomal contact maps3 versions - Latest release: 7 months ago - 12.2 thousand downloads total - 1 maintainer
HiCDCPlus 1.10.0
Hi-C Direct Caller Plus3 versions - Latest release: 7 months ago - 4.43 thousand downloads total - 1 maintainer
spatzie 1.8.0
Identification of enriched motif pairs from chromatin interaction data3 versions - Latest release: 7 months ago - 2.36 thousand downloads total - 1 maintainer
HiCool 1.2.0
HiCool3 versions - Latest release: 7 months ago - 1.65 thousand downloads total - 0 stars on GitHub - 1 maintainer
HiCDOC 1.4.1
A/B compartment detection and differential analysis4 versions - Latest release: 3 months ago - 2.82 thousand downloads total - 4 stars on GitHub - 1 maintainer
HicAggR 1.0.0
Set of 3D genomic interaction analysis tools1 version - Latest release: about 1 month ago - 82 downloads total - 0 stars on GitHub - 1 maintainer
hicVennDiagram 1.2.0
Venn Diagram for genomic interaction data4 versions - Latest release: 30 days ago - 833 downloads total - 0 stars on GitHub - 1 maintainer
Related Keywords
Software
12
HiC
10
DataImport
4
Normalization
3
Classification
3
Epigenetics
3
FunctionalGenomics
3
Visualization
2
PeakDetection
2
GeneRegulation
2
r-package
2
ChIPSeq
2
r
1
Annotation
1
RNASeq
1
DataRepresentation
1
DNaseSeq
1
ATACSeq
1
Sequencing
1
Clustering
1
Transcription
1
StructuralPrediction
1
ChIPchip
1
Coverage
1
transcription-factors
1
sequence-motif
1
Regression
1
prediction
1
hi-c
1
chromatin-interaction
1
chip-seq
1
3d-genome
1