bioconductor.org "DNA3DStructure" keyword
HiCDOC 1.12.0
A/B compartment detection and differential analysis10 versions - Latest release: 4 months ago - 9.42 thousand downloads total - 4 stars on GitHub - 1 maintainer
hicVennDiagram 1.8.0
Venn Diagram for genomic interaction data8 versions - Latest release: 4 months ago - 6.21 thousand downloads total - 0 stars on GitHub - 1 maintainer
FitHiC 1.36.0
Confidence estimation for intra-chromosomal contact maps6 versions - Latest release: 3 months ago - 20.4 thousand downloads total - 1 maintainer
DNAshapeR 1.38.0
High-throughput prediction of DNA shape features6 versions - Latest release: 3 months ago - 26.6 thousand downloads total - 1 maintainer
idr2d 1.24.0
Irreproducible Discovery Rate for Genomic Interactions Data7 versions - Latest release: 3 months ago - 12.1 thousand downloads total - 1 maintainer
HiCExperiment 1.10.0
Bioconductor class for interacting with Hi-C files in R6 versions - Latest release: 4 months ago - 2 dependent packages - 11 thousand downloads total - 4 stars on GitHub - 1 maintainer
HicAggR 1.2.0
Set of 3D genomic interaction analysis tools3 versions - Latest release: about 1 year ago - 1.59 thousand downloads total - 0 stars on GitHub - 1 maintainer
HiCool 1.10.0
HiCool6 versions - Latest release: 4 months ago - 6.31 thousand downloads total - 2 stars on GitHub - 1 maintainer
sevenC 1.30.0
Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs6 versions - Latest release: 4 months ago - 14.6 thousand downloads total - 13 stars on GitHub - 1 maintainer
HiCDCPlus 1.18.0
Hi-C Direct Caller Plus6 versions - Latest release: 3 months ago - 11.2 thousand downloads total - 1 maintainer
HiContacts 1.12.0
Analysing cool files in R with HiContacts6 versions - Latest release: 4 months ago - 2 dependent packages - 10.5 thousand downloads total - 14 stars on GitHub - 1 maintainer
spatzie 1.15.1
Identification of enriched motif pairs from chromatin interaction data6 versions - Latest release: 3 months ago - 7.02 thousand downloads total - 1 maintainer
Related Keywords
Software
12
HiC
10
DataImport
4
Normalization
3
Classification
3
Epigenetics
3
FunctionalGenomics
3
Visualization
2
r-package
2
GeneRegulation
2
PeakDetection
2
ChIPSeq
2
chromatin-interaction
1
chip-seq
1
3d-genome
1
Regression
1
Coverage
1
hi-c
1
prediction
1
sequence-motif
1
transcription-factors
1
Transcription
1
ChIPchip
1
Annotation
1
r
1
RNASeq
1
DataRepresentation
1
DNaseSeq
1
ATACSeq
1
StructuralPrediction
1
Sequencing
1
Clustering
1