bioconductor.org "DifferentialSplicing" keyword
View the packages on the bioconductor.org package registry that are tagged with the "DifferentialSplicing" keyword.
Top 0.3% on bioconductor.org
14 versions - Latest release: 2 months ago - 322 dependent packages - 5.97 million downloads total - 1 maintainer
limma 3.64.1
Linear Models for Microarray and Omics Data14 versions - Latest release: 2 months ago - 322 dependent packages - 5.97 million downloads total - 1 maintainer
Top 0.6% on bioconductor.org
23 versions - Latest release: 16 days ago - 181 dependent packages - 3.6 million downloads total - 4 maintainers
edgeR 4.6.3
Empirical Analysis of Digital Gene Expression Data in R23 versions - Latest release: 16 days ago - 181 dependent packages - 3.6 million downloads total - 4 maintainers
FLAMES 2.2.0
FLAMES: Full Length Analysis of Mutations and Splicing in long read RNA-seq data7 versions - Latest release: 3 months ago - 11 thousand downloads total - 38 stars on GitHub - 1 maintainer
DifferentialRegulation 2.6.0
Differentially regulated genes from scRNA-seq data9 versions - Latest release: 3 months ago - 6.18 thousand downloads total - 11 stars on GitHub - 1 maintainer
proActiv 1.18.0
Estimate Promoter Activity from RNA-Seq data5 versions - Latest release: 2 months ago - 8.72 thousand downloads total - 53 stars on GitHub - 1 maintainer
fishpond 2.14.0
Fishpond: downstream methods and tools for expression data5 versions - Latest release: 2 months ago - 1 dependent package - 36.4 thousand downloads total - 29 stars on GitHub - 1 maintainer
ASpli 2.18.0
Analysis of Alternative Splicing Using RNA-Seq5 versions - Latest release: 3 months ago - 1 dependent package - 23.6 thousand downloads total - 1 maintainer
psichomics 1.34.0
Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation6 versions - Latest release: 3 months ago - 18.9 thousand downloads total - 33 stars on GitHub - 1 maintainer
OutSplice 1.8.0
Comparison of Splicing Events between Tumor and Normal Samples5 versions - Latest release: 3 months ago - 4.45 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 7.6% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 47.9 thousand downloads total - 1 maintainer
DRIMSeq 1.36.0
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq5 versions - Latest release: 3 months ago - 1 dependent package - 47.9 thousand downloads total - 1 maintainer
IMAS 1.32.0
Integrative analysis of Multi-omics data for Alternative Splicing5 versions - Latest release: 3 months ago - 13.9 thousand downloads total - 1 maintainer
erccdashboard 1.42.0
Assess Differential Gene Expression Experiments with ERCC Controls5 versions - Latest release: 3 months ago - 24 thousand downloads total - 7 stars on GitHub - 1 maintainer
PECA 1.44.0
Probe-level Expression Change Averaging5 versions - Latest release: 3 months ago - 1 dependent package - 22.6 thousand downloads total - 1 maintainer
regsplice 1.34.1
L1-regularization based methods for detection of differential splicing7 versions - Latest release: about 2 months ago - 13.6 thousand downloads total - 3 stars on GitHub - 1 maintainer
Ularcirc 1.26.0
Shiny app for canonical and back splicing analysis (i.e. circular and mRNA analysis)5 versions - Latest release: 3 months ago - 10.4 thousand downloads total - 1 maintainer
SpliceWiz 1.10.1
interactive analysis and visualization of alternative splicing in R11 versions - Latest release: about 2 months ago - 7.49 thousand downloads total - 18 stars on GitHub - 1 maintainer
GeneStructureTools 1.28.0
Tools for spliced gene structure manipulation and analysis5 versions - Latest release: 3 months ago - 14.1 thousand downloads total - 1 maintainer
metaseqR2 1.20.0
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statisti...5 versions - Latest release: 3 months ago - 9.37 thousand downloads total - 1 maintainer
IsoformSwitchAnalyzeR 2.8.0
Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- a...5 versions - Latest release: 3 months ago - 37.7 thousand downloads total - 1 maintainer
TIN 1.40.0
Transcriptome instability analysis5 versions - Latest release: 3 months ago - 16.8 thousand downloads total - 1 maintainer
MBttest 1.36.0
Multiple Beta t-Tests5 versions - Latest release: 3 months ago - 13.7 thousand downloads total - 1 maintainer
Top 2.4% on bioconductor.org
6 versions - Latest release: 2 months ago - 10 dependent packages - 268 thousand downloads total - 1 maintainer
DEXSeq 1.54.1
Inference of differential exon usage in RNA-Seq6 versions - Latest release: 2 months ago - 10 dependent packages - 268 thousand downloads total - 1 maintainer
IVAS 2.28.0
Identification of genetic Variants affecting Alternative Splicing5 versions - Latest release: 3 months ago - 1 dependent package - 18.6 thousand downloads total - 1 maintainer
SplicingFactory 1.16.0
Splicing Diversity Analysis for Transcriptome Data5 versions - Latest release: 3 months ago - 5.84 thousand downloads total - 4 stars on GitHub - 1 maintainer
ExCluster 1.26.0
ExCluster robustly detects differentially expressed exons between two conditions of RNA-seq data,...5 versions - Latest release: 3 months ago - 9.52 thousand downloads total - 1 maintainer
AMARETTO 1.24.0
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis an...5 versions - Latest release: 3 months ago - 14.2 thousand downloads total - 1 maintainer
pairedGSEA 1.8.0
Paired DGE and DGS analysis for gene set enrichment analysis5 versions - Latest release: 3 months ago - 3.85 thousand downloads total - 2 stars on GitHub - 1 maintainer
kissDE 1.28.0
Retrieves Condition-Specific Variants in RNA-Seq Data5 versions - Latest release: 3 months ago - 12.1 thousand downloads total - 3 stars on GitHub - 1 maintainer
BANDITS 1.24.0
BANDITS: Bayesian ANalysis of DIfferenTial Splicing6 versions - Latest release: 3 months ago - 1 dependent package - 13.8 thousand downloads total - 17 stars on GitHub - 1 maintainer
IntEREst 1.32.0
Intron-Exon Retention Estimator7 versions - Latest release: 3 months ago - 15.5 thousand downloads total - 1 maintainer
Top 6.2% on bioconductor.org
5 versions - Latest release: 3 months ago - 45.3 thousand downloads total - 1 maintainer
SeqGSEA 1.48.0
Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and spli...5 versions - Latest release: 3 months ago - 45.3 thousand downloads total - 1 maintainer
VaSP 1.20.0
Quantification and Visualization of Variations of Splicing in Population5 versions - Latest release: 3 months ago - 6.78 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 5.3% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 52.3 thousand downloads total - 1 maintainer
puma 3.50.0
Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and ex...5 versions - Latest release: 3 months ago - 1 dependent package - 52.3 thousand downloads total - 1 maintainer
roastgsa 1.6.0
Rotation based gene set analysis4 versions - Latest release: 3 months ago - 3.81 thousand downloads total - 0 stars on GitHub - 1 maintainer
EventPointer 3.16.0
An effective identification of alternative splicing events using junction arrays and RNA-Seq data5 versions - Latest release: 3 months ago - 15.8 thousand downloads total - 4 stars on GitHub - 1 maintainer
saseR 1.4.0
Scalable Aberrant Splicing and Expression Retrieval3 versions - Latest release: 3 months ago - 2.98 thousand downloads total - 1 stars on GitHub - 1 maintainer
NxtIRFcore 1.6.0 removed
Core Engine for NxtIRF: a User-Friendly Intron Retention and Alternative Splicing Analysis using ...1 version - Latest release: almost 2 years ago - 1.4 thousand downloads total - 1 stars on GitHub - 1 maintainer
alpine 1.26.0 removed
alpine1 version - Latest release: almost 2 years ago - 12.2 thousand downloads total - 1 maintainer
NBSplice 1.18.0 removed
Negative Binomial Models to detect Differential Splicing1 version - Latest release: almost 2 years ago - 5.1 thousand downloads total - 1 maintainer
Related Keywords
Software
39
AlternativeSplicing
35
RNASeq
34
DifferentialExpression
28
GeneExpression
27
Sequencing
23
ImmunoOncology
21
Transcription
19
Transcriptomics
13
MultipleComparison
13
Regression
10
BatchEffect
9
Visualization
9
Coverage
8
Normalization
8
Microarray
8
Genetics
8
Bayesian
8
GeneSetEnrichment
7
TimeCourse
7
ExonArray
7
Preprocessing
7
Clustering
7
DataImport
7
QualityControl
7
BiomedicalInformatics
6
mRNAMicroarray
6
StatisticalMethod
6
FunctionalGenomics
6
Epigenetics
5
SystemsBiology
5
TwoChannel
4
SingleCell
4
CellBiology
4
Proteomics
4
ProprietaryPlatforms
4
OneChannel
4
GeneRegulation
4
SNP
3
Pathways
3
MicroRNAArray
3
ExperimentalDesign
2
WorkflowStep
2
Cheminformatics
2
Annotation
2
FunctionalPrediction
2
TranscriptomeVariant
2
rna-seq
2
alternative-splicing
2
Survival
2
splicing
2
GUI
2
Alignment
2
transcriptomics
2
statistics
2
DifferentialMethylation
2
SAGE
2
ChIPSeq
2
Metabolomics
2
genomics
2
gene-expression
2
bioconductor
2
rna-seq-data
2
GenomicVariation
1
HTA2.0
1
ChipOnChip
1
DataRepresentation
1
visualization
1
ATACSeq
1
ReportWriting
1
GenePrediction
1
Network
1
gini-index
1
MethylationArray
1
shannon-entropy
1
simpson-index
1
sqtl
1
KEGG
1
ballgown
1
3s-scores
1
CopyNumberVariation
1
DNAMethylation
1
LongRead
1
GeneTarget
1
alternative-promoters
1
promoter-activity
1
promoter-annotation
1
r
1
rnaseq
1
salmon
1
scrnaseq
1
GenomeAnnotation
1
PrincipalComponent
1
data-analyses
1
differential-gene-expression
1
differential-splicing-analysis
1
gtex
1
recount2
1
splicing-quantification
1
sra
1