Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "ExperimentalDesign" keyword
gemma.R 3.0.3
A wrapper for Gemma's Restful API to access curated gene expression data and differential express...6 versions - Latest release: 7 days ago - 2.01 thousand downloads total - 9 stars on GitHub - 1 maintainer
satuRn 1.10.0
Scalable Analysis of Differential Transcript Usage for Bulk and Single-Cell RNA-sequencing Applic...3 versions - Latest release: 6 months ago - 1 dependent package - 7.57 thousand downloads total - 20 stars on GitHub - 1 maintainer
rexposome 1.24.1
Exposome exploration and outcome data analysis3 versions - Latest release: 6 months ago - 1 dependent package - 10.3 thousand downloads total - 1 maintainer
OSAT 1.50.0
OSAT: Optimal Sample Assignment Tool3 versions - Latest release: 6 months ago - 21.7 thousand downloads total - 1 maintainer
SynMut 1.18.0
SynMut: Designing Synonymously Mutated Sequences with Different Genomic Signatures3 versions - Latest release: 6 months ago - 5.1 thousand downloads total - 1 stars on GitHub - 1 maintainer
wpm 1.12.0
Well Plate Maker3 versions - Latest release: 6 months ago - 4 thousand downloads total - 5 stars on GitHub - 1 maintainer
scMultiSim 1.0.0
Simulation of Multi-Modality Single Cell Data Guided By Gene Regulatory Networks and Cell-Cell In...1 version - Latest release: 22 days ago - 144 downloads total - 18 stars on GitHub - 1 maintainer
RnaSeqSampleSize 2.12.0
RnaSeqSampleSize3 versions - Latest release: 6 months ago - 16.8 thousand downloads total - 1 maintainer
ASAFE 1.28.0
Ancestry Specific Allele Frequency Estimation3 versions - Latest release: 6 months ago - 10.3 thousand downloads total - 1 maintainer
systemPipeShiny 1.12.0
systemPipeShiny: An Interactive Framework for Workflow Management and Visualization3 versions - Latest release: 6 months ago - 4.34 thousand downloads total - 1 maintainer
kissDE 1.22.0
Retrieves Condition-Specific Variants in RNA-Seq Data3 versions - Latest release: 6 months ago - 8.07 thousand downloads total - 3 stars on GitHub - 1 maintainer
systemPipeTools 1.10.0
Tools for data visualization3 versions - Latest release: 6 months ago - 2.93 thousand downloads total - 1 maintainer
Omixer 1.12.0
Omixer: multivariate and reproducible sample randomization to proactively counter batch effects i...3 versions - Latest release: 6 months ago - 3.65 thousand downloads total - 1 maintainer
gCrisprTools 2.8.0
Suite of Functions for Pooled Crispr Screen QC and Analysis3 versions - Latest release: 6 months ago - 11.6 thousand downloads total - 1 maintainer
GeomxTools 3.6.2
NanoString GeoMx Tools4 versions - Latest release: 3 months ago - 3 dependent packages - 15.9 thousand downloads total - 1 maintainer
MSstatsSampleSize 1.16.0 removed
Simulation tool for optimal design of high-dimensional MS-based proteomics experiment2 versions - Latest release: 6 months ago - 3.89 thousand downloads total - 1 maintainer
SWATH2stats 1.32.1
Transform and Filter SWATH Data for Statistical Packages4 versions - Latest release: 5 months ago - 14 thousand downloads total - 1 stars on GitHub - 1 maintainer
countsimQC 1.22.0
Compare Characteristic Features of Count Data Sets3 versions - Latest release: 21 days ago - 1 dependent package - 9 thousand downloads total - 27 stars on GitHub - 1 maintainer
ExploreModelMatrix 1.16.0
Graphical Exploration of Design Matrices3 versions - Latest release: 7 days ago - 8.06 thousand downloads total - 36 stars on GitHub - 1 maintainer
BUSseq 1.8.0
Batch Effect Correction with Unknow Subtypes for scRNA-seq data3 versions - Latest release: 6 months ago - 2.52 thousand downloads total - 0 stars on GitHub - 1 maintainer
MPRAnalyze 1.22.0
Statistical Analysis of MPRA data3 versions - Latest release: 6 days ago - 6.82 thousand downloads total - 10 stars on GitHub - 1 maintainer
regsplice 1.30.0
L1-regularization based methods for detection of differential splicing4 versions - Latest release: 6 days ago - 9.76 thousand downloads total - 3 stars on GitHub - 1 maintainer
MsExperiment 1.6.0
Infrastructure for Mass Spectrometry Experiments3 versions - Latest release: 8 days ago - 2 dependent packages - 14.9 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 4.9% on bioconductor.org
4 versions - Latest release: 19 days ago - 5 dependent packages - 46.6 thousand downloads total - 61 stars on GitHub - 1 maintainer
CATALYST 1.28.0
Cytometry dATa anALYSis Tools4 versions - Latest release: 19 days ago - 5 dependent packages - 46.6 thousand downloads total - 61 stars on GitHub - 1 maintainer
msqrob2 1.12.0
Robust statistical inference for quantitative LC-MS proteomics3 versions - Latest release: 16 days ago - 5.2 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 2.9% on bioconductor.org
3 versions - Latest release: 14 days ago - 4 dependent packages - 155 thousand downloads total - 1 stars on GitHub - 1 maintainer
ResidualMatrix 1.14.0
Creating a DelayedMatrix of Regression Residuals3 versions - Latest release: 14 days ago - 4 dependent packages - 155 thousand downloads total - 1 stars on GitHub - 1 maintainer
brainflowprobes 1.18.0
Plots and annotation for choosing BrainFlow target probe sequence3 versions - Latest release: 20 days ago - 4.96 thousand downloads total - 0 stars on GitHub - 1 maintainer
limpca 1.0.0
An R package for the linear modeling of high-dimensional designed data based on ASCA/APCA family ...1 version - Latest release: 22 days ago - 0 stars on GitHub - 1 maintainer
mobileRNA 1.0.0
mobileRNA: Investigate the RNA mobilome & population-scale changes1 version - Latest release: 22 days ago - 189 downloads total - 1 maintainer
BERT 1.0.0
Hierarchical Batch-Effect Adjustment with Trees1 version - Latest release: 22 days ago - 171 downloads total - 2 stars on GitHub - 1 maintainer
MOSim 1.16.0
Multi-Omics Simulation (MOSim)2 versions - Latest release: 7 months ago - 4.65 thousand downloads total - 6 stars on GitHub - 1 maintainer
Related Keywords
Software
31
DifferentialExpression
11
Visualization
10
Sequencing
10
RNASeq
9
ImmunoOncology
8
GeneExpression
8
Preprocessing
8
QualityControl
7
DataImport
7
Clustering
6
Regression
6
MassSpectrometry
6
Proteomics
6
SingleCell
6
MultipleComparison
5
Normalization
5
Transcriptomics
5
BatchEffect
5
Infrastructure
4
StatisticalMethod
4
DataRepresentation
4
ReportWriting
3
PrincipalComponent
3
BiomedicalInformatics
3
Classification
3
FlowCytometry
2
TimeCourse
2
Annotation
2
Metabolomics
2
ShinyApps
2
AlternativeSplicing
2
DifferentialSplicing
2
CellBiology
2
CellBasedAssays
2
Bayesian
2
Microarray
2
Genetics
2
bioconductor
1
rstats
1
Alignment
1
GenomeAssembly
1
SmallRNA
1
ExonArray
1
WorkflowStep
1
GeneTarget
1
FeatureExtraction
1
Coverage
1
Microbiome
1
mRNAMicroarray
1
Transcription
1
Spatial
1
ProprietaryPlatforms
1
ThirdPartyClient
1
bioinformatics
1
gemma
1
genomics
1
transcriptomics
1
BiologicalQuestion
1
SequenceMatching
1
GUI
1
GenomeWideAssociation
1
LinkageDisequilibrium
1
SNP
1
GenomicVariation
1
MultidimensionalScaling
1
CRISPR
1
FunctionalGenomics
1
GeneSetEnrichment
1
Pharmacogenetics
1
Pharmacogenomics
1
PooledScreens
1
SystemsBiology
1