bioconductor.org "ExperimentalDesign" keyword
DspikeIn 1.0.0
Estimating Absolute Abundance from Microbial Spike-in Controls2 versions - Latest release: 3 months ago - 933 downloads total - 16 stars on GitHub - 1 maintainer
SWATH2stats 1.40.1
Transform and Filter SWATH Data for Statistical Packages8 versions - Latest release: about 1 month ago - 21.4 thousand downloads total - 1 stars on GitHub - 1 maintainer
systemPipeShiny 1.20.0
systemPipeShiny: An Interactive Framework for Workflow Management and Visualization6 versions - Latest release: 4 months ago - 10.9 thousand downloads total - 1 maintainer
GeomxTools 3.14.0
NanoString GeoMx Tools9 versions - Latest release: 4 months ago - 3 dependent packages - 35.3 thousand downloads total - 1 maintainer
MsExperiment 1.12.0
Infrastructure for Mass Spectrometry Experiments7 versions - Latest release: 3 months ago - 2 dependent packages - 63.3 thousand downloads total - 5 stars on GitHub - 1 maintainer
mobileRNA 1.6.2
mobileRNA: Investigate the RNA mobilome & population-scale changes10 versions - Latest release: 4 days ago - 5.31 thousand downloads total - 1 maintainer
ASAFE 1.36.0
Ancestry Specific Allele Frequency Estimation6 versions - Latest release: 4 months ago - 17.7 thousand downloads total - 1 maintainer
MOSim 2.6.0
Multi-Omics Simulation (MOSim)6 versions - Latest release: 3 months ago - 11.7 thousand downloads total - 10 stars on GitHub - 1 maintainer
BUSseq 1.16.0
Batch Effect Correction with Unknow Subtypes for scRNA-seq data6 versions - Latest release: 4 months ago - 9.24 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 2.9% on bioconductor.org
7 versions - Latest release: 4 months ago - 4 dependent packages - 344 thousand downloads total - 1 stars on GitHub - 1 maintainer
ResidualMatrix 1.20.0
Creating a DelayedMatrix of Regression Residuals7 versions - Latest release: 4 months ago - 4 dependent packages - 344 thousand downloads total - 1 stars on GitHub - 1 maintainer
countsimQC 1.28.1
Compare Characteristic Features of Count Data Sets7 versions - Latest release: 5 days ago - 1 dependent package - 24.9 thousand downloads total - 29 stars on GitHub - 1 maintainer
kissDE 1.30.0
Retrieves Condition-Specific Variants in RNA-Seq Data6 versions - Latest release: 4 months ago - 14.8 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 4.9% on bioconductor.org
11 versions - Latest release: 3 months ago - 5 dependent packages - 84.8 thousand downloads total - 70 stars on GitHub - 1 maintainer
CATALYST 1.34.1
Cytometry dATa anALYSis Tools11 versions - Latest release: 3 months ago - 5 dependent packages - 84.8 thousand downloads total - 70 stars on GitHub - 1 maintainer
regsplice 1.36.0
L1-regularization based methods for detection of differential splicing8 versions - Latest release: 3 months ago - 16.4 thousand downloads total - 3 stars on GitHub - 1 maintainer
RnaSeqSampleSize 2.20.0
RnaSeqSampleSize6 versions - Latest release: 3 months ago - 26.1 thousand downloads total - 1 maintainer
EpipwR 1.4.0
Efficient Power Analysis for EWAS with Continuous or Binary Outcomes3 versions - Latest release: 4 months ago - 3.43 thousand downloads total - 2 stars on GitHub - 1 maintainer
BioGA 1.4.0
Bioinformatics Genetic Algorithm (BioGA)3 versions - Latest release: 4 months ago - 3.71 thousand downloads total - 0 stars on GitHub - 1 maintainer
cellmig 1.0.0
Uncertainty-aware quantitative analysis of high-throughput live cell migration data2 versions - Latest release: 3 months ago - 1.16 thousand downloads total - 1 stars on GitHub - 1 maintainer
Omixer 1.20.0
Omixer: multivariate and reproducible sample randomization to proactively counter batch effects i...6 versions - Latest release: 4 months ago - 9.73 thousand downloads total - 1 maintainer
limpca 1.6.0
An R package for the linear modeling of high-dimensional designed data based on ASCA/APCA family ...4 versions - Latest release: 4 months ago - 4.96 thousand downloads total - 2 stars on GitHub - 1 maintainer
systemPipeTools 1.18.0
Tools for data visualization6 versions - Latest release: 4 months ago - 8.47 thousand downloads total - 1 maintainer
OSAT 1.58.0
OSAT: Optimal Sample Assignment Tool6 versions - Latest release: 3 months ago - 29.7 thousand downloads total - 1 maintainer
scMultiSim 1.6.0
Simulation of Multi-Modality Single Cell Data Guided By Gene Regulatory Networks and Cell-Cell In...4 versions - Latest release: 4 months ago - 5.51 thousand downloads total - 63 stars on GitHub - 1 maintainer
gemma.R 3.6.1
A wrapper for Gemma's Restful API to access curated gene expression data and differential express...18 versions - Latest release: about 1 month ago - 9.03 thousand downloads total - 10 stars on GitHub - 1 maintainer
gCrisprTools 2.16.0
Suite of Functions for Pooled Crispr Screen QC and Analysis6 versions - Latest release: 3 months ago - 19.1 thousand downloads total - 1 maintainer
msqrob2 1.18.0
Robust statistical inference for quantitative LC-MS proteomics7 versions - Latest release: 4 months ago - 14.6 thousand downloads total - 7 stars on GitHub - 1 maintainer
BERT 1.6.0
High Performance Data Integration for Large-Scale Analyses of Incomplete Omic Profiles Using Batc...4 versions - Latest release: 4 months ago - 4.9 thousand downloads total - 4 stars on GitHub - 1 maintainer
seahtrue 1.4.0
Seahtrue revives XF data for structured data analysis3 versions - Latest release: 3 months ago - 3.93 thousand downloads total - 0 stars on GitHub - 1 maintainer
SynMut 1.26.0
SynMut: Designing Synonymously Mutated Sequences with Different Genomic Signatures6 versions - Latest release: 4 months ago - 10.9 thousand downloads total - 2 stars on GitHub - 1 maintainer
satuRn 1.18.0
Scalable Analysis of Differential Transcript Usage for Bulk and Single-Cell RNA-sequencing Applic...6 versions - Latest release: 4 months ago - 1 dependent package - 22.1 thousand downloads total - 22 stars on GitHub - 1 maintainer
MPRAnalyze 1.28.0
Statistical Analysis of MPRA data6 versions - Latest release: 3 months ago - 13.3 thousand downloads total - 11 stars on GitHub - 1 maintainer
wpm 1.20.0
Well Plate Maker6 versions - Latest release: 4 months ago - 10.1 thousand downloads total - 5 stars on GitHub - 1 maintainer
brainflowprobes 1.20.0 removed
Plots and annotation for choosing BrainFlow target probe sequence4 versions - Latest release: over 1 year ago - 5.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
rexposome 1.32.0
Exposome exploration and outcome data analysis6 versions - Latest release: 3 months ago - 1 dependent package - 19.2 thousand downloads total - 1 maintainer
ExploreModelMatrix 1.22.0
Graphical Exploration of Design Matrices7 versions - Latest release: 3 months ago - 19.2 thousand downloads total - 37 stars on GitHub - 1 maintainer
MSstatsSampleSize 1.16.0 removed
Simulation tool for optimal design of high-dimensional MS-based proteomics experiment2 versions - Latest release: over 2 years ago - 3.89 thousand downloads total - 1 maintainer
Related Keywords
Software
36
DifferentialExpression
12
Visualization
12
Sequencing
11
Preprocessing
10
QualityControl
10
DataImport
9
RNASeq
9
ImmunoOncology
8
GeneExpression
8
SingleCell
7
BatchEffect
7
Regression
7
Clustering
7
Normalization
6
Proteomics
6
MassSpectrometry
6
DataRepresentation
5
Transcriptomics
5
MultipleComparison
5
CellBiology
4
StatisticalMethod
4
Infrastructure
4
BiomedicalInformatics
3
Metabolomics
3
Bayesian
3
Classification
3
CellBasedAssays
3
ReportWriting
3
PrincipalComponent
3
Microarray
2
FlowCytometry
2
DifferentialSplicing
2
AlternativeSplicing
2
bioinformatics
2
TimeCourse
2
genomics
2
Genetics
2
Microbiome
2
Annotation
2
ShinyApps
2
FunctionalPrediction
1
GO
1
MicrotitrePlateAssay
1
MultidimensionalScaling
1
ThirdPartyClient
1
SequenceMatching
1
gemma
1
transcriptomics
1
Cheminformatics
1
CRISPR
1
GUI
1
nature-communications
1
BiologicalQuestion
1
rstats
1
data-science
1
bioconductor
1
FunctionalGenomics
1
Coverage
1
GeneTarget
1
data-integration
1
GeneSetEnrichment
1
Pharmacogenetics
1
Pharmacogenomics
1
bioconductor-package
1
batch-effect
1
PooledScreens
1
SystemsBiology
1
Phylogenetics
1
absolute-abundances
1
amplicon-sequencing
1
gene-copies
1
phylogenetic-trees
1
qiime2
1
quantifying
1
spike-ins
1
transformation
1
visualization
1
whole-cell
1
ProprietaryPlatforms
1
Spatial
1
Transcription
1
mRNAMicroarray
1
Alignment
1
GenomeAssembly
1
SmallRNA
1
WorkflowStep
1
GenomeWideAssociation
1
LinkageDisequilibrium
1
SNP
1
FeatureExtraction
1
GenomicVariation
1
ExonArray
1
Epigenetics
1
Technology
1
data-analysis
1
gene-expression
1
genetic-algorithms
1
optimization-algorithms
1