bioconductor.org "FeatureExtraction" keyword
timeOmics 1.22.0
Time-Course Multi-Omics data integration6 versions - Latest release: 4 months ago - 1 dependent package - 12.4 thousand downloads total - 21 stars on GitHub - 1 maintainer
Top 1.5% on bioconductor.org
6 versions - Latest release: 4 months ago - 9 dependent packages - 336 thousand downloads total - 485 stars on GitHub - 1 maintainer
maftools 2.26.0 💰
Summarize, Analyze and Visualize MAF Files6 versions - Latest release: 4 months ago - 9 dependent packages - 336 thousand downloads total - 485 stars on GitHub - 1 maintainer
rCGH 1.40.0
Comprehensive Pipeline for Analyzing and Visualizing Array-Based CGH Data6 versions - Latest release: 3 months ago - 1 dependent package - 27.4 thousand downloads total - 4 stars on GitHub - 1 maintainer
consICA 2.8.0
consensus Independent Component Analysis6 versions - Latest release: 4 months ago - 8.87 thousand downloads total - 0 stars on GitHub - 1 maintainer
DepecheR 1.26.0
Determination of essential phenotypic elements of clusters in high-dimensional entities6 versions - Latest release: 4 months ago - 1 dependent package - 24.5 thousand downloads total - 1 maintainer
evaluomeR 1.26.0
Evaluation of Bioinformatics Metrics7 versions - Latest release: 3 months ago - 12.3 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 5.5% on bioconductor.org
6 versions - Latest release: 3 months ago - 8 dependent packages - 63.3 thousand downloads total - 228 stars on GitHub - 1 maintainer
iSEE 2.22.0
Interactive SummarizedExperiment Explorer6 versions - Latest release: 3 months ago - 8 dependent packages - 63.3 thousand downloads total - 228 stars on GitHub - 1 maintainer
trena 1.24.0 removed
Fit transcriptional regulatory networks using gene expression, priors, machine learning2 versions - Latest release: over 2 years ago - 7 thousand downloads total - 1 stars on GitHub - 1 maintainer
synlet 2.10.0
Hits Selection for Synthetic Lethal RNAi Screen Data6 versions - Latest release: 4 months ago - 17.4 thousand downloads total - 1 maintainer
multiClust 1.40.0
multiClust: An R-package for Identifying Biologically Relevant Clusters in Cancer Transcriptome P...6 versions - Latest release: 3 months ago - 21.8 thousand downloads total - 1 maintainer
islify 1.2.0
Automatic scoring and classification of cell-based assay images2 versions - Latest release: 4 months ago - 2.42 thousand downloads total - 1 maintainer
SplineDV 1.2.0
Differential Variability (DV) analysis for single-cell RNA sequencing data. (e.g. Identify Differ...2 versions - Latest release: 3 months ago - 3.04 thousand downloads total - 3 stars on GitHub - 1 maintainer
censcyt 1.18.0
Differential abundance analysis with a right censored covariate in high-dimensional cytometry6 versions - Latest release: 3 months ago - 8.96 thousand downloads total - 0 stars on GitHub - 1 maintainer
squallms 1.4.0
Speedy quality assurance via lasso labeling for LC-MS data3 versions - Latest release: 3 months ago - 3.58 thousand downloads total - 3 stars on GitHub - 1 maintainer
immunogenViewer 1.4.0
Visualization and evaluation of protein immunogens3 versions - Latest release: 3 months ago - 2.96 thousand downloads total - 0 stars on GitHub - 1 maintainer
iSEEu 1.22.0
iSEE Universe7 versions - Latest release: 3 months ago - 1 dependent package - 15.2 thousand downloads total - 9 stars on GitHub - 1 maintainer
Top 9.4% on bioconductor.org
10 versions - Latest release: 3 months ago - 38.6 thousand downloads total - 190 stars on GitHub - 1 maintainer
MicrobiotaProcess 1.22.0
A comprehensive R package for managing and analyzing microbiome and other ecological data within ...10 versions - Latest release: 3 months ago - 38.6 thousand downloads total - 190 stars on GitHub - 1 maintainer
zFPKM 1.32.0
A suite of functions to facilitate zFPKM transformations6 versions - Latest release: 3 months ago - 24.2 thousand downloads total - 9 stars on GitHub - 1 maintainer
preciseTAD 1.20.0
preciseTAD: A machine learning framework for precise TAD boundary prediction6 versions - Latest release: 3 months ago - 11.5 thousand downloads total - 8 stars on GitHub - 1 maintainer
pathMED 1.2.0
Scoring Personalized Molecular Portraits4 versions - Latest release: 3 months ago - 2.06 thousand downloads total - 5 stars on GitHub - 1 maintainer
TDbasedUFE 1.10.0
Tensor Decomposition Based Unsupervised Feature Extraction6 versions - Latest release: 3 months ago - 1 dependent package - 6.92 thousand downloads total - 5 stars on GitHub - 1 maintainer
iSEEfier 1.6.0
Streamlining the creation of initial states for starting an iSEE instance4 versions - Latest release: 3 months ago - 5 thousand downloads total - 0 stars on GitHub - 1 maintainer
FeatSeekR 1.10.0
FeatSeekR an R package for unsupervised feature selection6 versions - Latest release: 3 months ago - 5.95 thousand downloads total - 1 stars on GitHub - 1 maintainer
TADCompare 1.20.0
TADCompare: Identification and characterization of differential TADs7 versions - Latest release: 3 months ago - 12.4 thousand downloads total - 26 stars on GitHub - 1 maintainer
CaDrA 1.8.0
Candidate Driver Analysis7 versions - Latest release: 3 months ago - 5.65 thousand downloads total - 24 stars on GitHub - 1 maintainer
deco 1.18.0 removed
Decomposing Heterogeneous Cohorts using Omic Data Profiling2 versions - Latest release: over 2 years ago - 4.59 thousand downloads total - 4 stars on GitHub - 1 maintainer
CPSM 1.2.0
CPSM: Cancer patient survival model2 versions - Latest release: 3 months ago - 2.53 thousand downloads total - 1 stars on GitHub - 1 maintainer
SpatialDecon 1.20.1
Deconvolution of mixed cells from spatial and/or bulk gene expression data8 versions - Latest release: 13 days ago - 1 dependent package - 17.8 thousand downloads total - 27 stars on GitHub - 1 maintainer
retrofit 1.10.0
RETROFIT: Reference-free deconvolution of cell mixtures in spatial transcriptomics6 versions - Latest release: 3 months ago - 6.08 thousand downloads total - 3 stars on GitHub - 1 maintainer
KnowSeq 1.24.0
KnowSeq R/Bioc package: The Smart Transcriptomic Pipeline6 versions - Latest release: 3 months ago - 13.8 thousand downloads total - 1 maintainer
Melissa 1.26.0
Bayesian clustering and imputationa of single cell methylomes7 versions - Latest release: 15 days ago - 10.9 thousand downloads total - 1 maintainer
BUMHMM 1.34.0
Computational pipeline for computing probability of modification from structure probing experimen...6 versions - Latest release: 3 months ago - 16.7 thousand downloads total - 1 maintainer
TDbasedUFEadv 1.10.0
Advanced package of tensor decomposition based unsupervised feature extraction7 versions - Latest release: 3 months ago - 7.26 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 5.6% on bioconductor.org
6 versions - Latest release: 3 months ago - 52 thousand downloads total - 1 maintainer
RDRToolbox 1.60.0
A package for nonlinear dimension reduction with Isomap and LLE.6 versions - Latest release: 3 months ago - 52 thousand downloads total - 1 maintainer
XAItest 1.2.0
XAItest: Enhancing Feature Discovery with eXplainable AI4 versions - Latest release: 3 months ago - 2.37 thousand downloads total - 1 stars on GitHub - 1 maintainer
rnaEditr 1.20.0
Statistical analysis of RNA editing sites and hyper-editing regions6 versions - Latest release: 3 months ago - 9.22 thousand downloads total - 3 stars on GitHub - 1 maintainer
raer 1.8.0
RNA editing tools in R6 versions - Latest release: 3 months ago - 5.82 thousand downloads total - 10 stars on GitHub - 1 maintainer
scMET 1.12.0
Bayesian modelling of cell-to-cell DNA methylation heterogeneity6 versions - Latest release: 3 months ago - 7.01 thousand downloads total - 18 stars on GitHub - 1 maintainer
diffcyt 1.30.0
Differential discovery in high-dimensional cytometry via high-resolution clustering8 versions - Latest release: 3 months ago - 5 dependent packages - 51.1 thousand downloads total - 21 stars on GitHub - 1 maintainer
ClusterFoldSimilarity 1.6.0
Calculate similarity of clusters from different single cell samples using foldchanges4 versions - Latest release: 3 months ago - 4.96 thousand downloads total - 1 maintainer
FEAST 1.18.0
FEAture SelcTion (FEAST) for Single-cell clustering6 versions - Latest release: 3 months ago - 12.9 thousand downloads total - 9 stars on GitHub - 1 maintainer
Top 6.9% on bioconductor.org
6 versions - Latest release: 3 months ago - 1 dependent package - 72.5 thousand downloads total - 30 stars on GitHub - 1 maintainer
M3Drop 1.36.0
Michaelis-Menten Modelling of Dropouts in single-cell RNASeq6 versions - Latest release: 3 months ago - 1 dependent package - 72.5 thousand downloads total - 30 stars on GitHub - 1 maintainer
SIAMCAT 2.14.0
Statistical Inference of Associations between Microbial Communities And host phenoTypes6 versions - Latest release: 3 months ago - 21.4 thousand downloads total - 1 maintainer
rScudo 1.26.0
Signature-based Clustering for Diagnostic Purposes7 versions - Latest release: 4 months ago - 11.9 thousand downloads total - 4 stars on GitHub - 1 maintainer
scrapper 1.4.0
Bindings to C++ Libraries for Single-Cell Analysis6 versions - Latest release: 3 months ago - 16.9 thousand downloads total - 1 maintainer
supersigs 1.18.0
Supervised mutational signatures6 versions - Latest release: 3 months ago - 9.79 thousand downloads total - 3 stars on GitHub - 1 maintainer
BUScorrect 1.28.0
Batch Effects Correction with Unknown Subtypes6 versions - Latest release: 3 months ago - 12.3 thousand downloads total - 1 maintainer
MOMA 1.22.0
Multi Omic Master Regulator Analysis6 versions - Latest release: 3 months ago - 10.6 thousand downloads total - 5 stars on GitHub - 1 maintainer
biosigner 1.38.0
Signature discovery from omics data7 versions - Latest release: 3 months ago - 2 dependent packages - 23.2 thousand downloads total - 1 maintainer
sarks 1.22.0
Suffix Array Kernel Smoothing for discovery of correlative sequence motifs and multi-motif domains6 versions - Latest release: 3 months ago - 9.61 thousand downloads total - 1 maintainer
pathwayPCA 1.26.0
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection6 versions - Latest release: 3 months ago - 1 dependent package - 14.8 thousand downloads total - 11 stars on GitHub - 1 maintainer
martini 1.30.0
GWAS Incorporating Networks6 versions - Latest release: 3 months ago - 14.5 thousand downloads total - 4 stars on GitHub - 1 maintainer
quantiseqr 1.18.0
Quantification of the Tumor Immune contexture from RNA-seq data6 versions - Latest release: 3 months ago - 2 dependent packages - 34.6 thousand downloads total - 1 maintainer
iasva 1.28.0
Iteratively Adjusted Surrogate Variable Analysis6 versions - Latest release: 3 months ago - 13.8 thousand downloads total - 2 maintainers
GARS 1.30.0
GARS: Genetic Algorithm for the identification of Robust Subsets of variables in high-dimensional...6 versions - Latest release: 3 months ago - 14.7 thousand downloads total - 1 maintainer
BPRMeth 1.35.0
Model higher-order methylation profiles6 versions - Latest release: 3 months ago - 1 dependent package - 21 thousand downloads total - 1 maintainer
HIREewas 1.28.0
Detection of cell-type-specific risk-CpG sites in epigenome-wide association studies6 versions - Latest release: 3 months ago - 12.2 thousand downloads total - 1 maintainer
ORFhunteR 1.18.0
Predict open reading frames in nucleotide sequences6 versions - Latest release: 3 months ago - 8.82 thousand downloads total - 1 stars on GitHub - 1 maintainer
BUSseq 1.16.0
Batch Effect Correction with Unknow Subtypes for scRNA-seq data6 versions - Latest release: 3 months ago - 8.91 thousand downloads total - 0 stars on GitHub - 1 maintainer
monaLisa 1.16.0
Binned Motif Enrichment Analysis and Visualization9 versions - Latest release: 3 months ago - 15.9 thousand downloads total - 41 stars on GitHub - 1 maintainer
sigFeature 1.28.0
sigFeature: Significant feature selection using SVM-RFE & t-statistic6 versions - Latest release: 3 months ago - 24.2 thousand downloads total - 1 maintainer
Top 7.2% on bioconductor.org
8 versions - Latest release: 3 months ago - 1 dependent package - 42.5 thousand downloads total - 1 maintainer
Rcpi 1.46.0
Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery8 versions - Latest release: 3 months ago - 1 dependent package - 42.5 thousand downloads total - 1 maintainer
anglemania 1.0.0
Feature Extraction for scRNA-seq Dataset Integration1 version - Latest release: 4 months ago - 718 downloads total - 4 stars on GitHub - 1 maintainer
SpectralTAD 1.26.0
SpectralTAD: Hierarchical TAD detection using spectral clustering6 versions - Latest release: 3 months ago - 1 dependent package - 14.5 thousand downloads total - 11 stars on GitHub - 1 maintainer
seqArchR 1.14.0
Identify Different Architectures of Sequence Elements6 versions - Latest release: 3 months ago - 1 dependent package - 7.7 thousand downloads total - 1 stars on GitHub - 1 maintainer
bambu 3.12.1
Context-Aware Transcript Quantification from Long Read RNA-Seq data11 versions - Latest release: about 1 month ago - 1 dependent package - 31.9 thousand downloads total - 217 stars on GitHub - 1 maintainer
GeneAccord 1.18.0 removed
Detection of clonally exclusive gene or pathway pairs in a cohort of cancer patients1 version - Latest release: over 2 years ago - 4.41 thousand downloads total - 2 stars on GitHub - 1 maintainer
mAPKL 1.32.0 removed
A Hybrid Feature Selection method for gene expression data2 versions - Latest release: over 2 years ago - 11.8 thousand downloads total - 1 maintainer
FCBF 2.12.0 removed
Fast Correlation Based Filter for Feature Selection3 versions - Latest release: almost 2 years ago - 1 dependent package - 7.98 thousand downloads total - 1 maintainer
Related Keywords
Software
69
GeneExpression
31
Clustering
28
Classification
22
Transcriptomics
22
Sequencing
22
RNASeq
20
ImmunoOncology
20
SingleCell
20
Visualization
15
Regression
13
Transcription
11
DifferentialExpression
11
DimensionReduction
11
Proteomics
10
Genetics
9
CellBasedAssays
8
Bayesian
8
StatisticalMethod
8
SystemsBiology
8
Microarray
8
MultipleComparison
8
GeneRegulation
7
Preprocessing
7
BatchEffect
6
r
6
Epigenetics
6
Coverage
6
Survival
6
bioinformatics
5
Pathways
5
BiomedicalInformatics
5
QualityControl
5
DNAMethylation
5
FunctionalGenomics
5
Normalization
5
GeneTarget
4
GeneticVariability
4
Metabolomics
4
FlowCytometry
4
ShinyApps
3
GUI
3
Alignment
3
single-cell
3
GenePrediction
3
CellBiology
3
Lipidomics
3
MassSpectrometry
3
PrincipalComponent
3
HiC
3
SomaticMutation
3
GraphAndNetwork
3
DataRepresentation
3
Network
3
rna-seq
2
DifferentialMethylation
2
single-cell-rna-seq
2
rna-seq-analysis
2
Annotation
2
bioconductor-package
2
MethylationArray
2
tensor-decomposition
2
MotifDiscovery
2
KEGG
2
mRNAMicroarray
2
heterogeneity
2
GenomeWideAssociation
2
Spatial
2
GenomicVariation
2
SNP
2
DataImport
2
GO
2
r-package
2
MathematicalBiology
2
GeneSetEnrichment
2
human-cell-atlas
2
CopyNumberVariation
2
Technology
2
transcriptomics
2
genomics
2
hacktoberfest
2
NetworkInference
2
Microbiome
2
clustering
2
DNASeq
2
Metagenomics
2
SupportVectorMachine
1
MotifAnnotation
1
ExperimentalDesign
1
Cheminformatics
1
ExperimentHubSoftware
1
systems-biology
1
snps
1
TimeCourse
1
network-analysis
1
gwas
1
cluster
1
integration
1
multi-omics
1
GeneSignaling
1