Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "FunctionalPrediction" keyword
factR 1.4.0
Functional Annotation of Custom Transcriptomes3 versions - Latest release: 6 months ago - 1.8 thousand downloads total - 1 stars on GitHub - 1 maintainer
epidecodeR 1.10.0
epidecodeR: a functional exploration tool for epigenetic and epitranscriptomic regulation3 versions - Latest release: 6 months ago - 2.79 thousand downloads total - 3 stars on GitHub - 1 maintainer
IsoformSwitchAnalyzeR 2.2.0
Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- a...3 versions - Latest release: 6 months ago - 28.3 thousand downloads total - 1 maintainer
Top 6.7% on bioconductor.org
3 versions - Latest release: 6 months ago - 7 dependent packages - 57.3 thousand downloads total - 1 maintainer
viper 1.36.0
Virtual Inference of Protein-activity by Enriched Regulon analysis3 versions - Latest release: 6 months ago - 7 dependent packages - 57.3 thousand downloads total - 1 maintainer
BasicSTARRseq 1.30.0
Basic peak calling on STARR-seq data3 versions - Latest release: 6 months ago - 12 thousand downloads total - 1 maintainer
Macarron 1.6.0
Prioritization of potentially bioactive metabolic features from epidemiological and environmental...3 versions - Latest release: 6 months ago - 1.93 thousand downloads total - 1 maintainer
ZygosityPredictor 1.2.0
Package for prediction of zygosity for variants/genes in NGS data3 versions - Latest release: 6 months ago - 1.25 thousand downloads total - 1 maintainer
crisprScore 1.6.0
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs3 versions - Latest release: 6 months ago - 3 dependent packages - 5 thousand downloads total - 9 stars on GitHub - 1 maintainer
EGAD 1.30.0
Extending guilt by association by degree3 versions - Latest release: 6 months ago - 13.4 thousand downloads total - 1 maintainer
RegEnrich 1.12.1
Gene regulator enrichment analysis4 versions - Latest release: about 1 month ago - 4.65 thousand downloads total - 1 maintainer
pfamAnalyzeR 1.2.0
Identification of domain isotypes in pfam data3 versions - Latest release: 6 months ago - 1 dependent package - 4.36 thousand downloads total - 1 stars on GitHub - 1 maintainer
garfield 1.30.0
GWAS Analysis of Regulatory or Functional Information Enrichment with LD correction3 versions - Latest release: 6 months ago - 10.6 thousand downloads total - 1 maintainer
GenomicOZone 1.16.0
Delineate outstanding genomic zones of differential gene activity3 versions - Latest release: 6 months ago - 5.21 thousand downloads total - 1 maintainer
GeneStructureTools 1.22.0
Tools for spliced gene structure manipulation and analysis3 versions - Latest release: 6 months ago - 9.35 thousand downloads total - 1 maintainer
PCAN 1.30.0
Phenotype Consensus ANalysis (PCAN)3 versions - Latest release: 6 months ago - 10.7 thousand downloads total - 1 maintainer
OmaDB 2.20.0
R wrapper for the OMA REST API3 versions - Latest release: 5 days ago - 2 dependent packages - 11.4 thousand downloads total - 1 stars on GitHub - 2 maintainers
screenCounter 1.4.0
Counting Reads in High-Throughput Sequencing Screens3 versions - Latest release: 5 days ago - 1.22 thousand downloads total - 3 stars on GitHub - 1 maintainer
progeny 1.26.0
Pathway RespOnsive GENes for activity inference from gene expression3 versions - Latest release: 7 days ago - 2 dependent packages - 26.5 thousand downloads total - 88 stars on GitHub - 1 maintainer
projectR 1.20.0
Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering3 versions - Latest release: 8 days ago - 1 dependent package - 7.22 thousand downloads total - 62 stars on GitHub - 1 maintainer
InterMineR 1.26.0
R Interface with InterMine-Powered Databases4 versions - Latest release: 12 days ago - 10.4 thousand downloads total - 17 stars on GitHub - 1 maintainer
cageminer 1.10.0
Candidate Gene Miner3 versions - Latest release: 14 days ago - 2.64 thousand downloads total - 1 stars on GitHub - 1 maintainer
drawProteins 1.24.0
Package to Draw Protein Schematics from Uniprot API output4 versions - Latest release: 15 days ago - 1 dependent package - 14.8 thousand downloads total - 33 stars on GitHub - 1 maintainer
PhyloProfile 1.18.0
PhyloProfile7 versions - Latest release: 19 days ago - 7.09 thousand downloads total - 29 stars on GitHub - 1 maintainer
SurfR 0.99.54
Surface Protein Prediction and Identification1 version - Latest release: 21 days ago - 129 downloads total - 0 stars on GitHub - 1 maintainer
RIVER 1.26.0
R package for RIVER (RNA-Informed Variant Effect on Regulation)2 versions - Latest release: 6 months ago - 8.53 thousand downloads total - 10 stars on GitHub - 1 maintainer
circRNAprofiler 1.16.0
circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs2 versions - Latest release: 7 months ago - 6.56 thousand downloads total - 10 stars on GitHub - 1 maintainer
SOMNiBUS 1.10.0
Smooth modeling of bisulfite sequencing2 versions - Latest release: 6 months ago - 2.75 thousand downloads total - 1 stars on GitHub - 1 maintainer
famat 1.12.0
Functional analysis of metabolic and transcriptomic data2 versions - Latest release: 6 months ago - 3.29 thousand downloads total - 1 stars on GitHub - 1 maintainer
planttfhunter 1.2.0
Identification and classification of plant transcription factors2 versions - Latest release: 7 months ago - 949 downloads total - 0 stars on GitHub - 1 maintainer
fenr 1.0.5
Fast functional enrichment for interactive applications4 versions - Latest release: 3 months ago - 733 downloads total - 0 stars on GitHub - 1 maintainer
diggit 1.34.0
Inference of Genetic Variants Driving Cellular Phenotypes2 versions - Latest release: 6 months ago - 13 thousand downloads total - 1 maintainer
Related Keywords
Software
31
FunctionalGenomics
14
GeneExpression
11
SystemsBiology
10
GeneRegulation
9
DifferentialExpression
8
GenePrediction
7
Transcription
7
Annotation
7
Sequencing
6
Transcriptomics
6
Visualization
6
BiomedicalInformatics
5
GO
5
RNASeq
5
NetworkEnrichment
5
GeneSetEnrichment
5
AlternativeSplicing
5
Pathways
4
Genetics
4
Network
4
Clustering
3
SNP
3
Coverage
3
Reactome
3
Proteomics
3
TranscriptomeVariant
3
GenomeAnnotation
3
KEGG
3
MultipleComparison
3
DataImport
3
Regression
3
genomics
3
DifferentialMethylation
2
GenomeWideAssociation
2
ComparativeGenomics
2
GenomicVariation
2
VariantAnnotation
2
r
2
shiny
2
CRISPR
2
BatchEffect
2
DifferentialSplicing
2
ImmunoOncology
2
StatisticalMethod
2
Epigenetics
2
systemsbiology
1
snp
1
genomicvariation
1
geneticvariability
1
genetics
1
generegulation
1
functionalprediction
1
functionalgenomics
1
functional-variants
1
clustering
1
biomedicalinformatics
1
bayesian
1
GeneticVariability
1
Bayesian
1
PrincipalComponent
1
visualization
1
custom-transcriptomes
1
phylogenetic-profile
1
orthologs
1
interactive-visualizations
1
transcription-factors
1
rstats
1
protein-domains
1
plants
1
plant-genomics
1
hidden-markov-models
1
gene-families
1
functional-genomics
1
HiddenMarkovModel
1
Classification
1
pathways
1
genes
1
gene-ontology
1
compound
1
DNAMethylation
1
StructuralPrediction
1
GenomeAssembly
1
variant
1
transcriptomics
1
transcriptomevariant
1
transcription
1
CellBiology
1
TwoChannel
1
NetworkInference
1
GeneTarget
1
PeakDetection
1
Metabolomics
1
GraphAndNetwork
1
sgrna-design
1
sgrna
1
scoring-algorithm
1
grna-sequences
1
grna-sequence
1
grna
1