bioconductor.org "FunctionalPrediction" keyword
View the packages on the bioconductor.org package registry that are tagged with the "FunctionalPrediction" keyword.
SOMNiBUS 1.16.0
Smooth modeling of bisulfite sequencing6 versions - Latest release: 3 months ago - 6.2 thousand downloads total - 1 stars on GitHub - 1 maintainer
crupR 1.0.0
An R package to predict condition-specific enhancers from ChIP-seq data1 version - Latest release: 3 months ago - 871 downloads total - 0 stars on GitHub - 1 maintainer
MetaboDynamics 1.0.2
Bayesian analysis of longitudinal metabolomics data2 versions - Latest release: about 1 month ago - 1.59 thousand downloads total - 5 stars on GitHub - 1 maintainer
crisprScore 1.12.0
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs5 versions - Latest release: 3 months ago - 3 dependent packages - 10.7 thousand downloads total - 11 stars on GitHub - 1 maintainer
epidecodeR 1.16.0
epidecodeR: a functional exploration tool for epigenetic and epitranscriptomic regulation5 versions - Latest release: 3 months ago - 6.74 thousand downloads total - 3 stars on GitHub - 1 maintainer
screenCounter 1.8.0
Counting Reads in High-Throughput Sequencing Screens5 versions - Latest release: 2 months ago - 4.57 thousand downloads total - 3 stars on GitHub - 1 maintainer
PICB 1.0.0
piRNA Cluster Builder1 version - Latest release: 3 months ago - 1.32 thousand downloads total - 5 stars on GitHub - 1 maintainer
RIVER 1.32.0
R package for RIVER (RNA-Informed Variant Effect on Regulation)5 versions - Latest release: 3 months ago - 13.5 thousand downloads total - 10 stars on GitHub - 1 maintainer
diggit 1.40.0
Inference of Genetic Variants Driving Cellular Phenotypes5 versions - Latest release: 2 months ago - 17.9 thousand downloads total - 1 maintainer
planttfhunter 1.8.0
Identification and classification of plant transcription factors5 versions - Latest release: 2 months ago - 4.67 thousand downloads total - 1 stars on GitHub - 1 maintainer
projectR 1.24.0
Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering5 versions - Latest release: 3 months ago - 1 dependent package - 11.4 thousand downloads total - 62 stars on GitHub - 1 maintainer
circRNAprofiler 1.22.1
circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs6 versions - Latest release: about 2 months ago - 12.6 thousand downloads total - 10 stars on GitHub - 1 maintainer
PhyloProfile 2.0.6
PhyloProfile15 versions - Latest release: 17 days ago - 11.8 thousand downloads total - 35 stars on GitHub - 1 maintainer
cageminer 1.14.0
Candidate Gene Miner5 versions - Latest release: 3 months ago - 6.48 thousand downloads total - 1 stars on GitHub - 1 maintainer
SurfR 1.4.1
Surface Protein Prediction and Identification8 versions - Latest release: 24 days ago - 3.48 thousand downloads total - 0 stars on GitHub - 1 maintainer
GeneStructureTools 1.28.0
Tools for spliced gene structure manipulation and analysis5 versions - Latest release: 3 months ago - 14.1 thousand downloads total - 1 maintainer
IsoformSwitchAnalyzeR 2.8.0
Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- a...5 versions - Latest release: 3 months ago - 37.7 thousand downloads total - 1 maintainer
Top 6.7% on bioconductor.org
5 versions - Latest release: 3 months ago - 7 dependent packages - 72.6 thousand downloads total - 1 maintainer
viper 1.42.0
Virtual Inference of Protein-activity by Enriched Regulon analysis5 versions - Latest release: 3 months ago - 7 dependent packages - 72.6 thousand downloads total - 1 maintainer
BasicSTARRseq 1.36.0
Basic peak calling on STARR-seq data5 versions - Latest release: 3 months ago - 17.3 thousand downloads total - 1 maintainer
PCAN 1.36.0
Phenotype Consensus ANalysis (PCAN)5 versions - Latest release: 3 months ago - 15.1 thousand downloads total - 1 maintainer
RegEnrich 1.18.1
Gene regulator enrichment analysis7 versions - Latest release: about 2 months ago - 8.64 thousand downloads total - 1 maintainer
drawProteins 1.28.0
Package to Draw Protein Schematics from Uniprot API output6 versions - Latest release: 3 months ago - 1 dependent package - 20.8 thousand downloads total - 34 stars on GitHub - 1 maintainer
OmaDB 2.24.0
R wrapper for the OMA REST API5 versions - Latest release: 3 months ago - 2 dependent packages - 16.8 thousand downloads total - 2 stars on GitHub - 2 maintainers
EGAD 1.36.0
Extending guilt by association by degree5 versions - Latest release: 3 months ago - 17.8 thousand downloads total - 1 maintainer
GenomicOZone 1.22.0
Delineate outstanding genomic zones of differential gene activity5 versions - Latest release: 3 months ago - 9.18 thousand downloads total - 1 maintainer
pfamAnalyzeR 1.8.0
Identification of domain isotypes in pfam data5 versions - Latest release: 3 months ago - 1 dependent package - 11.9 thousand downloads total - 1 stars on GitHub - 1 maintainer
ZygosityPredictor 1.8.0
Package for prediction of zygosity for variants/genes in NGS data5 versions - Latest release: 3 months ago - 4.17 thousand downloads total - 1 maintainer
factR 1.10.0
Functional Annotation of Custom Transcriptomes5 versions - Latest release: 3 months ago - 5.22 thousand downloads total - 1 stars on GitHub - 1 maintainer
garfield 1.36.0
GWAS Analysis of Regulatory or Functional Information Enrichment with LD correction5 versions - Latest release: 3 months ago - 14 thousand downloads total - 1 maintainer
Macarron 1.12.2
Prioritization of potentially bioactive metabolic features from epidemiological and environmental...7 versions - Latest release: 29 days ago - 5.81 thousand downloads total - 1 maintainer
progeny 1.30.0
Pathway RespOnsive GENes for activity inference from gene expression5 versions - Latest release: 3 months ago - 2 dependent packages - 39.5 thousand downloads total - 105 stars on GitHub - 1 maintainer
famat 1.18.0
Functional analysis of metabolic and transcriptomic data5 versions - Latest release: 2 months ago - 7.09 thousand downloads total - 1 stars on GitHub - 1 maintainer
seahtrue 1.2.0
Seahtrue revives XF data for structured data analysis2 versions - Latest release: 3 months ago - 1.88 thousand downloads total - 0 stars on GitHub - 1 maintainer
fenr 1.6.1
Fast functional enrichment for interactive applications11 versions - Latest release: about 1 month ago - 4.5 thousand downloads total - 0 stars on GitHub - 1 maintainer
InterMineR 1.26.0 removed
R Interface with InterMine-Powered Databases4 versions - Latest release: about 1 year ago - 12 thousand downloads total - 17 stars on GitHub - 1 maintainer
Related Keywords
Software
35
FunctionalGenomics
14
GeneExpression
11
SystemsBiology
10
GeneRegulation
9
DifferentialExpression
8
Transcription
7
Transcriptomics
7
Visualization
7
GenePrediction
7
Annotation
7
Sequencing
7
GO
6
NetworkEnrichment
5
GeneSetEnrichment
5
Genetics
5
BiomedicalInformatics
5
AlternativeSplicing
5
Pathways
5
RNASeq
5
GenomeAnnotation
4
DataImport
4
Coverage
4
KEGG
4
Network
4
MultipleComparison
4
SNP
3
Clustering
3
TranscriptomeVariant
3
Proteomics
3
BatchEffect
3
genomics
3
Reactome
3
Metabolomics
3
Regression
3
ImmunoOncology
2
Bayesian
2
PeakDetection
2
GenomicVariation
2
StatisticalMethod
2
HistoneModification
2
GeneTarget
2
DifferentialSplicing
2
CRISPR
2
VariantAnnotation
2
GenomeWideAssociation
2
ComparativeGenomics
2
shiny
2
r
2
CellBiology
2
Epigenetics
2
DifferentialMethylation
2
DataRepresentation
2
PrincipalComponent
1
dge
1
enrichment-analysis
1
metaanalysis
1
plots
1
gtf
1
biology
1
visualization
1
phylogenetic-profile
1
orthologs
1
interactive-visualizations
1
heatmap
1
bioinformatics
1
intermine
1
functional-annotation
1
custom-transcriptomes
1
SomaticMutation
1
StructuralVariation
1
CopyNumberVariation
1
rna-seq-analysis
1
compound
1
gene-ontology
1
genes
1
GraphAndNetwork
1
pathways
1
TwoChannel
1
NetworkInference
1
CellBasedAssays
1
Cheminformatics
1
ExperimentalDesign
1
MicrotitrePlateAssay
1
Preprocessing
1
QualityControl
1
Microarray
1
surfaceome
1
surface
1
rpackage
1
rnaseq
1
public-data
1
proteins
1
bayesian
1
GeneticVariability
1
Alignment
1
genomics-visualization
1
epitranscriptomics
1
epigenetics
1
differential-expression
1