bioconductor.org "FunctionalPrediction" keyword
RegEnrich 1.20.0
Gene regulator enrichment analysis8 versions - Latest release: 3 months ago - 15.1 thousand downloads total - 1 maintainer
Macarron 1.13.2
Prioritization of potentially bioactive metabolic features from epidemiological and environmental...8 versions - Latest release: 3 months ago - 7.41 thousand downloads total - 1 maintainer
IsoformSwitchAnalyzeR 2.10.0
Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- a...6 versions - Latest release: 3 months ago - 50.4 thousand downloads total - 1 maintainer
Top 6.7% on bioconductor.org
6 versions - Latest release: 3 months ago - 7 dependent packages - 102 thousand downloads total - 1 maintainer
viper 1.44.0
Virtual Inference of Protein-activity by Enriched Regulon analysis6 versions - Latest release: 3 months ago - 7 dependent packages - 102 thousand downloads total - 1 maintainer
BasicSTARRseq 1.38.0
Basic peak calling on STARR-seq data6 versions - Latest release: 3 months ago - 20.1 thousand downloads total - 1 maintainer
PCAN 1.38.0
Phenotype Consensus ANalysis (PCAN)6 versions - Latest release: 3 months ago - 18.3 thousand downloads total - 1 maintainer
EGAD 1.38.0
Extending guilt by association by degree6 versions - Latest release: 3 months ago - 22.1 thousand downloads total - 1 maintainer
factR 1.12.0
Functional Annotation of Custom Transcriptomes7 versions - Latest release: 13 days ago - 6.6 thousand downloads total - 2 stars on GitHub - 1 maintainer
progeny 1.32.0
Pathway RespOnsive GENes for activity inference from gene expression6 versions - Latest release: 4 months ago - 2 dependent packages - 53.8 thousand downloads total - 108 stars on GitHub - 1 maintainer
fenr 1.8.1
Fast functional enrichment for interactive applications14 versions - Latest release: about 2 months ago - 6.86 thousand downloads total - 0 stars on GitHub - 1 maintainer
SOMNiBUS 1.18.0
Smooth modeling of bisulfite sequencing7 versions - Latest release: 3 months ago - 7.75 thousand downloads total - 1 stars on GitHub - 1 maintainer
RIVER 1.34.0
R package for RIVER (RNA-Informed Variant Effect on Regulation)6 versions - Latest release: 3 months ago - 16.1 thousand downloads total - 10 stars on GitHub - 1 maintainer
OmaDB 2.26.0
R wrapper for the OMA REST API6 versions - Latest release: 3 months ago - 2 dependent packages - 20.8 thousand downloads total - 2 stars on GitHub - 2 maintainers
PICB 1.2.0
piRNA Cluster Builder2 versions - Latest release: 4 months ago - 2.81 thousand downloads total - 5 stars on GitHub - 1 maintainer
diggit 1.42.0
Inference of Genetic Variants Driving Cellular Phenotypes6 versions - Latest release: 3 months ago - 20.4 thousand downloads total - 1 maintainer
crupR 1.2.0
An R package to predict condition-specific enhancers from ChIP-seq data2 versions - Latest release: 3 months ago - 2.37 thousand downloads total - 0 stars on GitHub - 1 maintainer
cageminer 1.16.0
Candidate Gene Miner7 versions - Latest release: 3 months ago - 8.88 thousand downloads total - 1 stars on GitHub - 1 maintainer
garfield 1.38.0
GWAS Analysis of Regulatory or Functional Information Enrichment with LD correction6 versions - Latest release: 3 months ago - 16.2 thousand downloads total - 1 maintainer
SurfR 1.6.0
Surface Protein Prediction and Identification10 versions - Latest release: 3 months ago - 5.41 thousand downloads total - 0 stars on GitHub - 1 maintainer
circRNAprofiler 1.24.0
circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs7 versions - Latest release: 3 months ago - 15.3 thousand downloads total - 11 stars on GitHub - 1 maintainer
famat 1.20.3
Functional analysis of metabolic and transcriptomic data7 versions - Latest release: about 1 month ago - 9.33 thousand downloads total - 1 stars on GitHub - 1 maintainer
planttfhunter 1.10.0
Identification and classification of plant transcription factors6 versions - Latest release: 3 months ago - 6.38 thousand downloads total - 1 stars on GitHub - 1 maintainer
seahtrue 1.4.0
Seahtrue revives XF data for structured data analysis3 versions - Latest release: 3 months ago - 3.93 thousand downloads total - 0 stars on GitHub - 1 maintainer
drawProteins 1.30.0
Package to Draw Protein Schematics from Uniprot API output8 versions - Latest release: 17 days ago - 1 dependent package - 25.5 thousand downloads total - 35 stars on GitHub - 1 maintainer
screenCounter 1.10.0
Counting Reads in High-Throughput Sequencing Screens6 versions - Latest release: 3 months ago - 6.37 thousand downloads total - 3 stars on GitHub - 1 maintainer
GeneStructureTools 1.30.0
Tools for spliced gene structure manipulation and analysis6 versions - Latest release: 3 months ago - 17.2 thousand downloads total - 1 maintainer
pfamAnalyzeR 1.10.0
Identification of domain isotypes in pfam data6 versions - Latest release: 3 months ago - 1 dependent package - 15.8 thousand downloads total - 1 stars on GitHub - 1 maintainer
PhyloProfile 2.2.2
PhyloProfile16 versions - Latest release: 3 months ago - 15.3 thousand downloads total - 37 stars on GitHub - 1 maintainer
crisprScore 1.14.0
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs6 versions - Latest release: 3 months ago - 3 dependent packages - 13.6 thousand downloads total - 11 stars on GitHub - 1 maintainer
epidecodeR 1.18.0
epidecodeR: a functional exploration tool for epigenetic and epitranscriptomic regulation6 versions - Latest release: 4 months ago - 8.31 thousand downloads total - 3 stars on GitHub - 1 maintainer
GenomicOZone 1.24.0
Delineate outstanding genomic zones of differential gene activity6 versions - Latest release: 3 months ago - 11.2 thousand downloads total - 1 maintainer
ZygosityPredictor 1.10.0
Package for prediction of zygosity for variants/genes in NGS data6 versions - Latest release: 3 months ago - 6.01 thousand downloads total - 1 maintainer
MetaboDynamics 2.0.2
Bayesian analysis of longitudinal metabolomics data4 versions - Latest release: 2 months ago - 3.24 thousand downloads total - 5 stars on GitHub - 1 maintainer
projectR 1.26.0
Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering6 versions - Latest release: 3 months ago - 1 dependent package - 14.2 thousand downloads total - 62 stars on GitHub - 1 maintainer
InterMineR 1.26.0 removed
R Interface with InterMine-Powered Databases4 versions - Latest release: almost 2 years ago - 12 thousand downloads total - 17 stars on GitHub - 1 maintainer
Related Keywords
Software
35
FunctionalGenomics
14
GeneExpression
11
SystemsBiology
10
GeneRegulation
9
DifferentialExpression
8
Visualization
7
GenePrediction
7
Annotation
7
Sequencing
7
Transcriptomics
7
Transcription
7
GO
6
Genetics
5
GeneSetEnrichment
5
Pathways
5
NetworkEnrichment
5
BiomedicalInformatics
5
RNASeq
5
AlternativeSplicing
5
DataImport
4
KEGG
4
MultipleComparison
4
GenomeAnnotation
4
Network
4
Coverage
4
Clustering
4
Proteomics
3
Reactome
3
SNP
3
genomics
3
Regression
3
TranscriptomeVariant
3
BatchEffect
3
Metabolomics
3
HistoneModification
2
CellBiology
2
GenomeWideAssociation
2
ComparativeGenomics
2
r
2
GenomicVariation
2
Bayesian
2
DataRepresentation
2
CRISPR
2
shiny
2
Epigenetics
2
DifferentialMethylation
2
StatisticalMethod
2
GeneTarget
2
PeakDetection
2
VariantAnnotation
2
ImmunoOncology
2
DifferentialSplicing
2
crispr-cas9
1
crispr
1
bioconductor-package
1
bioconductor
1
visualization
1
phylogenetic-profile
1
orthologs
1
interactive-visualizations
1
heatmap
1
bioinformatics
1
DimensionReduction
1
Alignment
1
QualityControl
1
biology
1
Preprocessing
1
MicrotitrePlateAssay
1
ExperimentalDesign
1
intermine
1
Cheminformatics
1
CellBasedAssays
1
transcription-factors
1
DifferentialPeakCalling
1
functional-analysis
1
longitudinal-analysis
1
dynamics
1
metabolomics-data
1
metabolomics-pipeline
1
TimeCourse
1
SomaticMutation
1
StructuralVariation
1
CopyNumberVariation
1
genomics-visualization
1
epitranscriptomics
1
epigenetics
1
differential-expression
1
Epitranscriptomics
1
ChipOnChip
1
sgrna-design
1
sgrna
1
scoring-algorithm
1
grna-sequences
1
grna-sequence
1
grna
1
BiologicalQuestion
1
Microarray
1
crispr-target
1
crispr-design
1