bioconductor.org "GUI" keyword
DiscoRhythm 1.26.0
Interactive Workflow for Discovering Rhythmicity in Biological Data6 versions - Latest release: 4 months ago - 13.9 thousand downloads total - 13 stars on GitHub - 1 maintainer
MSstatsShiny 1.12.1
MSstats GUI for Statistical Anaylsis of Proteomics Experiments11 versions - Latest release: 2 days ago - 9.86 thousand downloads total - 9 stars on GitHub - 1 maintainer
uSORT 1.36.0
uSORT: A self-refining ordering pipeline for gene selection6 versions - Latest release: 4 months ago - 17.2 thousand downloads total - 1 maintainer
psichomics 1.36.1
Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation8 versions - Latest release: about 1 month ago - 22.2 thousand downloads total - 33 stars on GitHub - 1 maintainer
ideal 2.4.0
Interactive Differential Expression AnaLysis6 versions - Latest release: 4 months ago - 22.9 thousand downloads total - 29 stars on GitHub - 1 maintainer
Top 4.4% on bioconductor.org
6 versions - Latest release: 4 months ago - 4 dependent packages - 91.7 thousand downloads total - 128 stars on GitHub - 1 maintainer
SC3 1.38.0
Single-Cell Consensus Clustering6 versions - Latest release: 4 months ago - 4 dependent packages - 91.7 thousand downloads total - 128 stars on GitHub - 1 maintainer
iSEEtree 1.4.0
Interactive visualisation for microbiome data3 versions - Latest release: 4 months ago - 4.22 thousand downloads total - 3 stars on GitHub - 1 maintainer
SmartPhos 1.0.0
A phosphoproteomics data analysis package with an interactive ShinyApp1 version - Latest release: 4 months ago - 339 downloads total - 5 stars on GitHub - 1 maintainer
miaDash 1.2.0
Dashboard for the interactive analysis and exploration of microbiome data2 versions - Latest release: 4 months ago - 2.49 thousand downloads total - 1 stars on GitHub - 1 maintainer
epivizrStandalone 1.38.0
Run Epiviz Interactive Genomic Data Visualization App within R6 versions - Latest release: 3 months ago - 1 dependent package - 18.5 thousand downloads total - 1 maintainer
omicplotR 1.30.0
Visual Exploration of Omic Datasets Using a Shiny App6 versions - Latest release: 3 months ago - 15 thousand downloads total - 1 maintainer
Top 5.5% on bioconductor.org
6 versions - Latest release: 3 months ago - 8 dependent packages - 63.3 thousand downloads total - 228 stars on GitHub - 1 maintainer
iSEE 2.22.0
Interactive SummarizedExperiment Explorer6 versions - Latest release: 3 months ago - 8 dependent packages - 63.3 thousand downloads total - 228 stars on GitHub - 1 maintainer
Top 5.3% on bioconductor.org
8 versions - Latest release: 8 days ago - 4 dependent packages - 63.7 thousand downloads total - 1 maintainer
RedeR 3.6.2
Interactive visualization and manipulation of nested networks8 versions - Latest release: 8 days ago - 4 dependent packages - 63.7 thousand downloads total - 1 maintainer
plotGrouper 1.28.0
Shiny app GUI wrapper for ggplot with built-in statistical analysis6 versions - Latest release: 3 months ago - 11.9 thousand downloads total - 6 stars on GitHub - 1 maintainer
goatea 1.0.2
Interactive Exploration of GSEA by the GOAT Method2 versions - Latest release: 8 days ago - 139 downloads total - 1 maintainer
iSEEpathways 1.8.0
iSEE extension for panels related to pathway analysis5 versions - Latest release: 3 months ago - 6.01 thousand downloads total - 2 stars on GitHub - 1 maintainer
iSEEu 1.22.0
iSEE Universe7 versions - Latest release: 3 months ago - 1 dependent package - 15.2 thousand downloads total - 9 stars on GitHub - 1 maintainer
GA4GHshiny 1.32.0
Shiny application for interacting with GA4GH-based data servers6 versions - Latest release: 3 months ago - 14.9 thousand downloads total - 2 stars on GitHub - 1 maintainer
TSCAN 1.48.0
Tools for Single-Cell Analysis7 versions - Latest release: 3 months ago - 3 dependent packages - 68.7 thousand downloads total - 1 maintainer
iSEEfier 1.6.0
Streamlining the creation of initial states for starting an iSEE instance4 versions - Latest release: 3 months ago - 5 thousand downloads total - 0 stars on GitHub - 1 maintainer
MSstatsQCgui 1.30.0
A graphical user interface for MSstatsQC package6 versions - Latest release: 4 months ago - 12.6 thousand downloads total - 1 maintainer
CytoPipelineGUI 1.8.0
GUI's for visualization of flow cytometry data analysis pipelines5 versions - Latest release: 3 months ago - 5.52 thousand downloads total - 2 stars on GitHub - 1 maintainer
omXplore 1.4.2
Vizualization tools for 'omics' datasets with R8 versions - Latest release: 3 months ago - 5.12 thousand downloads total - 0 stars on GitHub - 1 maintainer
GNOSIS 1.8.0
Genomics explorer using statistical and survival analysis in R5 versions - Latest release: 3 months ago - 5.68 thousand downloads total - 7 stars on GitHub - 1 maintainer
SpliceWiz 1.12.0
interactive analysis and visualization of alternative splicing in R12 versions - Latest release: 3 months ago - 10.3 thousand downloads total - 21 stars on GitHub - 1 maintainer
flowPloidy 1.36.0
Analyze flow cytometer data to determine sample ploidy6 versions - Latest release: 3 months ago - 16.4 thousand downloads total - 5 stars on GitHub - 1 maintainer
adductomicsR 1.26.0
Processing of adductomic mass spectral datasets6 versions - Latest release: 3 months ago - 15.5 thousand downloads total - 1 stars on GitHub - 1 maintainer
wpm 1.20.0
Well Plate Maker6 versions - Latest release: 3 months ago - 10.1 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 6.5% on bioconductor.org
6 versions - Latest release: 3 months ago - 1 dependent package - 57.5 thousand downloads total - 1 maintainer
interactiveDisplay 1.48.0
Package for enabling powerful shiny web displays of Bioconductor objects6 versions - Latest release: 3 months ago - 1 dependent package - 57.5 thousand downloads total - 1 maintainer
Top 6.2% on bioconductor.org
7 versions - Latest release: 4 months ago - 61 dependent packages - 765 thousand downloads total - 11 stars on GitHub - 1 maintainer
ExperimentHub 3.0.0
Client to access ExperimentHub resources7 versions - Latest release: 4 months ago - 61 dependent packages - 765 thousand downloads total - 11 stars on GitHub - 1 maintainer
TVTB 1.36.0
TVTB: The VCF Tool Box8 versions - Latest release: 4 months ago - 16.6 thousand downloads total - 2 stars on GitHub - 1 maintainer
flowcatchR 1.44.0
Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells6 versions - Latest release: 3 months ago - 23.5 thousand downloads total - 4 stars on GitHub - 1 maintainer
MethylAid 1.44.0
Visual and interactive quality control of large Illumina DNA Methylation array data sets6 versions - Latest release: 3 months ago - 28.2 thousand downloads total - 1 maintainer
rTRMui 1.48.0
A shiny user interface for rTRM6 versions - Latest release: 3 months ago - 23.9 thousand downloads total - 1 stars on GitHub - 1 maintainer
sangeranalyseR 1.20.0
sangeranalyseR: a suite of functions for the analysis of Sanger sequence data in R6 versions - Latest release: 3 months ago - 21.7 thousand downloads total - 1 maintainer
IsoCorrectoRGUI 1.26.0
Graphical User Interface for IsoCorrectoR6 versions - Latest release: 3 months ago - 1 dependent package - 10.7 thousand downloads total - 1 maintainer
GSCA 2.40.0
GSCA: Gene Set Context Analysis6 versions - Latest release: 3 months ago - 22.9 thousand downloads total - 1 maintainer
bettr 1.6.0
A Better Way To Explore What Is Best4 versions - Latest release: 4 months ago - 4.88 thousand downloads total - 3 stars on GitHub - 1 maintainer
geyser 1.2.0
Gene Expression displaYer of SummarizedExperiment in R2 versions - Latest release: 3 months ago - 2.84 thousand downloads total - 0 stars on GitHub - 1 maintainer
MatrixQCvis 1.18.0
Shiny-based interactive data-quality exploration for omics data6 versions - Latest release: 3 months ago - 10.8 thousand downloads total - 1 maintainer
canceR 1.44.0
A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC9 versions - Latest release: 3 months ago - 26.7 thousand downloads total - 8 stars on GitHub - 1 maintainer
Top 4.7% on bioconductor.org
6 versions - Latest release: 3 months ago - 3 dependent packages - 1.02 million downloads total - 1 maintainer
interactiveDisplayBase 1.48.0
Base package for enabling powerful shiny web displays of Bioconductor objects6 versions - Latest release: 3 months ago - 3 dependent packages - 1.02 million downloads total - 1 maintainer
MACSQuantifyR 1.24.0
Fast treatment of MACSQuantify FACS data6 versions - Latest release: 3 months ago - 9.23 thousand downloads total - 1 maintainer
scTreeViz 1.16.0
R/Bioconductor package to interactively explore and visualize single cell RNA-seq datasets with h...7 versions - Latest release: 3 months ago - 8.08 thousand downloads total - 1 maintainer
Top 5.4% on bioconductor.org
6 versions - Latest release: 3 months ago - 57.4 thousand downloads total - 1 maintainer
limmaGUI 1.86.0
GUI for limma Package With Two Color Microarrays6 versions - Latest release: 3 months ago - 57.4 thousand downloads total - 1 maintainer
shinybiocloader 1.0.0
Use a Shiny Bioconductor CSS loader1 version - Latest release: 4 months ago - 908 downloads total - 1 maintainer
cbpManager 1.18.0
Generate, manage, and edit data and metadata files suitable for the import in cBioPortal for Canc...6 versions - Latest release: 3 months ago - 9.91 thousand downloads total - 9 stars on GitHub - 1 maintainer
singleCellTK 2.20.1
Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data11 versions - Latest release: 26 days ago - 1 dependent package - 38.4 thousand downloads total - 1 maintainer
Prostar 1.42.0
Provides a GUI for DAPAR12 versions - Latest release: 3 months ago - 25.4 thousand downloads total - 1 maintainer
crisprShiny 1.6.0
Exploring curated CRISPR gRNAs via Shiny4 versions - Latest release: 3 months ago - 4.43 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 5.4% on bioconductor.org
6 versions - Latest release: 4 months ago - 2 dependent packages - 66.4 thousand downloads total - 56 stars on GitHub - 1 maintainer
pcaExplorer 3.4.0
Interactive Visualization of RNA-seq Data Using a Principal Components Approach6 versions - Latest release: 4 months ago - 2 dependent packages - 66.4 thousand downloads total - 56 stars on GitHub - 1 maintainer
GmicR 1.24.0
Combines WGCNA and xCell readouts with bayesian network learrning to generate a Gene-Module Immun...6 versions - Latest release: 3 months ago - 11.4 thousand downloads total - 1 maintainer
scanMiRApp 1.16.0
scanMiR shiny application6 versions - Latest release: 3 months ago - 8.2 thousand downloads total - 1 maintainer
CRISPRball 1.6.0
Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filte...5 versions - Latest release: 26 days ago - 4.65 thousand downloads total - 11 stars on GitHub - 1 maintainer
pRolocGUI 2.20.0
Interactive visualisation of spatial proteomics data6 versions - Latest release: 4 months ago - 27.1 thousand downloads total - 8 stars on GitHub - 1 maintainer
OMICsPCA 1.28.0
An R package for quantitative integration and analysis of multiple omics assays from heterogeneou...6 versions - Latest release: 3 months ago - 16.2 thousand downloads total - 1 maintainer
GeneTonic 3.4.0
Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional ...6 versions - Latest release: 3 months ago - 1 dependent package - 21.2 thousand downloads total - 78 stars on GitHub - 1 maintainer
SVMDO 1.10.0
Identification of Tumor-Discriminating mRNA Signatures via Support Vector Machines Supported by D...9 versions - Latest release: 3 months ago - 7.11 thousand downloads total - 0 stars on GitHub - 1 maintainer
ExperimentHubData 1.36.0
Add resources to ExperimentHub6 versions - Latest release: 3 months ago - 3 dependent packages - 43.9 thousand downloads total - 1 maintainer
Top 4.3% on bioconductor.org
8 versions - Latest release: 3 months ago - 97 dependent packages - 1.49 million downloads total - 13 stars on GitHub - 1 maintainer
AnnotationHub 4.0.0
Client to access AnnotationHub resources8 versions - Latest release: 3 months ago - 97 dependent packages - 1.49 million downloads total - 13 stars on GitHub - 1 maintainer
phantasus 1.30.0
Visual and interactive gene expression analysis6 versions - Latest release: 3 months ago - 19.8 thousand downloads total - 1 maintainer
Top 4.8% on bioconductor.org
6 versions - Latest release: 3 months ago - 77.7 thousand downloads total - 1 maintainer
affylmGUI 1.84.0
GUI for limma Package with Affymetrix Microarrays6 versions - Latest release: 3 months ago - 77.7 thousand downloads total - 1 maintainer
GEM 1.36.0
GEM: fast association study for the interplay of Gene, Environment and Methylation6 versions - Latest release: 3 months ago - 16 thousand downloads total - 1 maintainer
epivizrChart 1.32.0
R interface to epiviz web components6 versions - Latest release: 3 months ago - 15.3 thousand downloads total - 1 maintainer
GeDi 1.6.1
Defining and visualizing the distances between different genesets6 versions - Latest release: 3 months ago - 5.04 thousand downloads total - 1 stars on GitHub - 1 maintainer
epivizr 2.40.0
R Interface to epiviz web app6 versions - Latest release: 3 months ago - 2 dependent packages - 35.3 thousand downloads total - 1 maintainer
bioCancer 1.38.0
Interactive Multi-Omics Cancers Data Visualization and Analysis8 versions - Latest release: 3 months ago - 19.4 thousand downloads total - 21 stars on GitHub - 1 maintainer
CoSIA 1.10.1
An Investigation Across Different Species and Tissues8 versions - Latest release: 2 months ago - 4.81 thousand downloads total - 1 maintainer
crossmeta 1.34.0 removed
Cross Platform Meta-Analysis of Microarray Data5 versions - Latest release: 10 months ago - 1 dependent package - 19.4 thousand downloads total - 3 stars on GitHub - 1 maintainer
oneSENSE 1.26.0 removed
One-Dimensional Soli-Expression by Nonlinear Stochastic Embedding (OneSENSE)3 versions - Latest release: almost 2 years ago - 7.09 thousand downloads total - 1 maintainer
metavizr 1.24.0 removed
R Interface to the metaviz web app for interactive metagenomics data analysis and visualization1 version - Latest release: over 2 years ago - 7.94 thousand downloads total - 1 maintainer
Related Keywords
Software
71
Visualization
39
GeneExpression
24
ShinyApps
23
ImmunoOncology
20
QualityControl
18
DifferentialExpression
16
DataImport
14
Transcriptomics
12
Clustering
11
Transcription
11
Infrastructure
10
DataRepresentation
10
Preprocessing
10
RNASeq
10
shiny
9
bioconductor
9
MultipleComparison
9
GeneSetEnrichment
8
MassSpectrometry
8
Normalization
8
Sequencing
8
DimensionReduction
8
SingleCell
7
BatchEffect
7
Network
7
Proteomics
7
Microarray
7
r
7
ThirdPartyClient
6
GO
6
FlowCytometry
5
Classification
5
Genetics
5
PrincipalComponent
5
ReportWriting
4
Regression
4
gene-expression
4
Pathways
4
GraphAndNetwork
4
Bayesian
4
Microbiome
3
FunctionalGenomics
3
gui
3
user-friendly
3
transcriptomics
3
CellBasedAssays
3
FeatureExtraction
3
rna-seq-analysis
3
hacktoberfest
3
TimeCourse
3
data-visualization
3
OneChannel
3
TwoChannel
3
DNASeq
3
Survival
3
reproducible-research
3
Metabolomics
3
Alignment
3
rna-seq-data
3
GeneticVariability
2
SequenceMatching
2
Reactome
2
Annotation
2
BiologicalQuestion
2
transcriptome
2
AnnotationData
2
core-package
2
crispr
2
NetworkEnrichment
2
NetworkInference
2
Coverage
2
GeneTarget
2
SystemsBiology
2
CRISPR
2
mRNAMicroarray
2
DNAMethylation
2
cancer
2
KEGG
2
MethylationArray
2
human-cell-atlas
2
bioconductor-package
2
microbiome
2
BiomedicalInformatics
2
AlternativeSplicing
2
CellBiology
2
visualisation
2
DifferentialSplicing
2
rna-seq
2
isee
2
Metagenomics
2
webapp
2
crispr-analysis
1
crispr-design
1
principal-components
1
patient-data
1
miRNA
1
crispr-screen
1
mutation-data
1
filegenerator
1