Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "GUI" keyword
scTreeViz 1.8.0
R/Bioconductor package to interactively explore and visualize single cell RNA-seq datasets with h...3 versions - Latest release: 6 months ago - 2.46 thousand downloads total - 1 maintainer
MethylAid 1.36.0
Visual and interactive quality control of large Illumina DNA Methylation array data sets3 versions - Latest release: 6 months ago - 18.5 thousand downloads total - 1 maintainer
OMICsPCA 1.20.0
An R package for quantitative integration and analysis of multiple omics assays from heterogeneou...3 versions - Latest release: 6 months ago - 7.29 thousand downloads total - 1 maintainer
phantasus 1.22.2
Visual and interactive gene expression analysis3 versions - Latest release: 6 months ago - 11 thousand downloads total - 1 maintainer
wpm 1.12.0
Well Plate Maker3 versions - Latest release: 6 months ago - 4 thousand downloads total - 5 stars on GitHub - 1 maintainer
adductomicsR 1.18.0
Processing of adductomic mass spectral datasets3 versions - Latest release: 6 months ago - 6.85 thousand downloads total - 1 stars on GitHub - 1 maintainer
crossmeta 1.28.0
Cross Platform Meta-Analysis of Microarray Data3 versions - Latest release: 6 months ago - 1 dependent package - 15.8 thousand downloads total - 1 stars on GitHub - 1 maintainer
uSORT 1.28.0
uSORT: A self-refining ordering pipeline for gene selection3 versions - Latest release: 6 months ago - 9.91 thousand downloads total - 1 maintainer
IsoCorrectoRGUI 1.18.0
Graphical User Interface for IsoCorrectoR3 versions - Latest release: 6 months ago - 1 dependent package - 5.43 thousand downloads total - 1 maintainer
MSstatsQCgui 1.22.0
A graphical user interface for MSstatsQC package3 versions - Latest release: 6 months ago - 6.85 thousand downloads total - 1 maintainer
GmicR 1.16.0
Combines WGCNA and xCell readouts with bayesian network learrning to generate a Gene-Module Immun...3 versions - Latest release: 6 months ago - 5.69 thousand downloads total - 1 maintainer
omicplotR 1.22.0
Visual Exploration of Omic Datasets Using a Shiny App3 versions - Latest release: 6 months ago - 8.13 thousand downloads total - 1 maintainer
Top 6.5% on bioconductor.org
3 versions - Latest release: 6 months ago - 1 dependent package - 39.9 thousand downloads total - 1 maintainer
interactiveDisplay 1.40.0
Package for enabling powerful shiny web displays of Bioconductor objects3 versions - Latest release: 6 months ago - 1 dependent package - 39.9 thousand downloads total - 1 maintainer
GA4GHshiny 1.24.0
Shiny application for interacting with GA4GH-based data servers3 versions - Latest release: 6 months ago - 8.4 thousand downloads total - 2 stars on GitHub - 1 maintainer
scanMiRApp 1.8.0
scanMiR shiny application3 versions - Latest release: 6 months ago - 2.78 thousand downloads total - 1 maintainer
Prostar 1.34.6
Provides a GUI for DAPAR6 versions - Latest release: 3 months ago - 17.8 thousand downloads total - 1 maintainer
MatrixQCvis 1.10.0
Shiny-based interactive data-quality exploration for omics data3 versions - Latest release: 6 months ago - 4.12 thousand downloads total - 1 maintainer
sangeranalyseR 1.12.0
sangeranalyseR: a suite of functions for the analysis of Sanger sequence data in R3 versions - Latest release: 6 months ago - 10.4 thousand downloads total - 1 maintainer
canceR 1.36.8
A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC6 versions - Latest release: about 1 month ago - 19 thousand downloads total - 8 stars on GitHub - 1 maintainer
GEM 1.28.0
GEM: fast association study for the interplay of Gene, Environment and Methylation3 versions - Latest release: 6 months ago - 10 thousand downloads total - 1 maintainer
MACSQuantifyR 1.16.0
Fast treatment of MACSQuantify FACS data3 versions - Latest release: 6 months ago - 4.32 thousand downloads total - 1 maintainer
TVTB 1.28.0
TVTB: The VCF Tool Box3 versions - Latest release: 6 months ago - 9.85 thousand downloads total - 2 stars on GitHub - 1 maintainer
singleCellTK 2.12.2
Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data4 versions - Latest release: 3 months ago - 1 dependent package - 17.8 thousand downloads total - 1 maintainer
epivizrChart 1.24.0
R interface to epiviz web components3 versions - Latest release: 6 months ago - 8.34 thousand downloads total - 1 maintainer
TSCAN 1.40.1
Tools for Single-Cell Analysis4 versions - Latest release: 3 months ago - 3 dependent packages - 41.7 thousand downloads total - 1 maintainer
SpliceWiz 1.4.1
interactive analysis and visualization of alternative splicing in R4 versions - Latest release: 4 months ago - 2.6 thousand downloads total - 10 stars on GitHub - 1 maintainer
epivizr 2.32.0
R Interface to epiviz web app3 versions - Latest release: 6 months ago - 2 dependent packages - 25.5 thousand downloads total - 1 maintainer
epivizrStandalone 1.30.0
Run Epiviz Interactive Genomic Data Visualization App within R3 versions - Latest release: 6 months ago - 1 dependent package - 12.4 thousand downloads total - 1 maintainer
CoSIA 1.2.0
An Investigation Across Different Species and Tissues3 versions - Latest release: 6 months ago - 1.05 thousand downloads total - 1 maintainer
oneSENSE 1.24.0
One-Dimensional Soli-Expression by Nonlinear Stochastic Embedding (OneSENSE)3 versions - Latest release: 6 months ago - 6.71 thousand downloads total - 1 maintainer
GSCA 2.32.0
GSCA: Gene Set Context Analysis3 versions - Latest release: 6 months ago - 16.1 thousand downloads total - 1 maintainer
DiscoRhythm 1.18.0
Interactive Workflow for Discovering Rhythmicity in Biological Data3 versions - Latest release: 6 months ago - 6.91 thousand downloads total - 11 stars on GitHub - 1 maintainer
GeDi 1.0.0
Defining and visualizing the distances between different genesets1 version - Latest release: 21 days ago - 148 downloads total - 1 stars on GitHub - 1 maintainer
bettr 1.0.0
A Better Way To Explore What Is Best1 version - Latest release: 21 days ago - 268 downloads total - 3 stars on GitHub - 1 maintainer
bioCancer 1.32.0
Interactive Multi-Omics Cancers Data Visualization and Analysis5 versions - Latest release: 8 days ago - 12.4 thousand downloads total - 19 stars on GitHub - 1 maintainer
Top 5.4% on bioconductor.org
3 versions - Latest release: 20 days ago - 2 dependent packages - 49.4 thousand downloads total - 52 stars on GitHub - 1 maintainer
pcaExplorer 2.30.0
Interactive Visualization of RNA-seq Data Using a Principal Components Approach3 versions - Latest release: 20 days ago - 2 dependent packages - 49.4 thousand downloads total - 52 stars on GitHub - 1 maintainer
iSEEu 1.15.1
iSEE Universe3 versions - Latest release: 20 days ago - 1 dependent package - 6.84 thousand downloads total - 10 stars on GitHub - 1 maintainer
Top 5.5% on bioconductor.org
3 versions - Latest release: 20 days ago - 8 dependent packages - 33.6 thousand downloads total - 218 stars on GitHub - 1 maintainer
iSEE 2.16.0
Interactive SummarizedExperiment Explorer3 versions - Latest release: 20 days ago - 8 dependent packages - 33.6 thousand downloads total - 218 stars on GitHub - 1 maintainer
GeneTonic 2.8.0
Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional ...3 versions - Latest release: 20 days ago - 1 dependent package - 10 thousand downloads total - 75 stars on GitHub - 1 maintainer
Top 6.2% on bioconductor.org
2 versions - Latest release: 6 months ago - 61 dependent packages - 427 thousand downloads total - 6 stars on GitHub - 1 maintainer
ExperimentHub 2.10.0
Client to access ExperimentHub resources2 versions - Latest release: 6 months ago - 61 dependent packages - 427 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 4.3% on bioconductor.org
3 versions - Latest release: 26 days ago - 97 dependent packages - 966 thousand downloads total - 13 stars on GitHub - 1 maintainer
AnnotationHub 3.10.1
Client to access AnnotationHub resources3 versions - Latest release: 26 days ago - 97 dependent packages - 966 thousand downloads total - 13 stars on GitHub - 1 maintainer
MSstatsShiny 1.6.0
MSstats GUI for Statistical Anaylsis of Proteomics Experiments6 versions - Latest release: 10 days ago - 2.75 thousand downloads total - 9 stars on GitHub - 1 maintainer
Top 4.4% on bioconductor.org
3 versions - Latest release: 12 days ago - 4 dependent packages - 63.4 thousand downloads total - 115 stars on GitHub - 1 maintainer
SC3 1.32.0
Single-Cell Consensus Clustering3 versions - Latest release: 12 days ago - 4 dependent packages - 63.4 thousand downloads total - 115 stars on GitHub - 1 maintainer
SVMDO 1.4.0
Identification of Tumor-Discriminating mRNA Signatures via Support Vector Machines Supported by D...5 versions - Latest release: 12 days ago - 1.91 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 5.4% on bioconductor.org
3 versions - Latest release: 13 days ago - 48.9 thousand downloads total - 1 maintainer
limmaGUI 1.80.0
GUI for limma Package With Two Color Microarrays3 versions - Latest release: 13 days ago - 48.9 thousand downloads total - 1 maintainer
Top 5.3% on bioconductor.org
4 versions - Latest release: 13 days ago - 4 dependent packages - 48.3 thousand downloads total - 1 maintainer
RedeR 3.0.0
Interactive visualization and manipulation of nested networks4 versions - Latest release: 13 days ago - 4 dependent packages - 48.3 thousand downloads total - 1 maintainer
Top 4.8% on bioconductor.org
3 versions - Latest release: 13 days ago - 66 thousand downloads total - 1 maintainer
affylmGUI 1.78.0
GUI for limma Package with Affymetrix Microarrays3 versions - Latest release: 13 days ago - 66 thousand downloads total - 1 maintainer
rTRMui 1.42.0
A shiny user interface for rTRM3 versions - Latest release: 13 days ago - 16.7 thousand downloads total - 1 stars on GitHub - 1 maintainer
flowcatchR 1.38.0
Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells3 versions - Latest release: 20 days ago - 15.4 thousand downloads total - 5 stars on GitHub - 1 maintainer
cbpManager 1.12.0
Generate, manage, and edit data and metadata files suitable for the import in cBioPortal for Canc...3 versions - Latest release: 15 days ago - 3.21 thousand downloads total - 6 stars on GitHub - 1 maintainer
psichomics 1.30.0
Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation4 versions - Latest release: 15 days ago - 14.4 thousand downloads total - 33 stars on GitHub - 1 maintainer
CRISPRball 1.0.0
Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filte...1 version - Latest release: 21 days ago - 276 downloads total - 5 stars on GitHub - 1 maintainer
pRolocGUI 2.14.0
Interactive visualisation of spatial proteomics data3 versions - Latest release: 19 days ago - 18.7 thousand downloads total - 6 stars on GitHub - 1 maintainer
ideal 1.28.0
Interactive Differential Expression AnaLysis3 versions - Latest release: 20 days ago - 14.5 thousand downloads total - 29 stars on GitHub - 1 maintainer
crisprShiny 1.0.0
Exploring curated CRISPR gRNAs via Shiny1 version - Latest release: 21 days ago - 164 downloads total - 1 stars on GitHub - 1 maintainer
iSEEfier 1.0.0
Streamlining the creation of initial states for starting an iSEE instance1 version - Latest release: 21 days ago - 73 downloads total - 0 stars on GitHub - 1 maintainer
iSEEpathways 1.0.0
iSEE extension for panels related to pathway analysis1 version - Latest release: 7 months ago - 677 downloads total - 1 stars on GitHub - 1 maintainer
GNOSIS 1.0.0
Genomics explorer using statistical and survival analysis in R1 version - Latest release: 7 months ago - 705 downloads total - 2 stars on GitHub - 1 maintainer
Top 4.7% on bioconductor.org
2 versions - Latest release: 7 months ago - 3 dependent packages - 793 thousand downloads total - 1 maintainer
interactiveDisplayBase 1.40.0
Base package for enabling powerful shiny web displays of Bioconductor objects2 versions - Latest release: 7 months ago - 3 dependent packages - 793 thousand downloads total - 1 maintainer
CytoPipelineGUI 1.0.0
GUI's for visualization of flow cytometry data analysis pipelines1 version - Latest release: 7 months ago - 564 downloads total - 1 maintainer
plotGrouper 1.20.0
Shiny app GUI wrapper for ggplot with built-in statistical analysis2 versions - Latest release: 6 months ago - 5.85 thousand downloads total - 7 stars on GitHub - 1 maintainer
flowPloidy 1.28.0
Analyze flow cytometer data to determine sample ploidy2 versions - Latest release: 7 months ago - 9.98 thousand downloads total - 4 stars on GitHub - 1 maintainer
ExperimentHubData 1.28.0
Add resources to ExperimentHub2 versions - Latest release: 6 months ago - 3 dependent packages - 26.5 thousand downloads total - 1 maintainer
metavizr 1.24.0 removed
R Interface to the metaviz web app for interactive metagenomics data analysis and visualization1 version - Latest release: 7 months ago - 7.94 thousand downloads total - 1 maintainer
Related Keywords
Software
64
Visualization
35
GeneExpression
22
ImmunoOncology
20
ShinyApps
17
QualityControl
16
DifferentialExpression
14
DataImport
12
Transcriptomics
11
Transcription
11
RNASeq
10
Clustering
10
bioconductor
9
Preprocessing
9
MultipleComparison
9
DataRepresentation
9
Infrastructure
9
Sequencing
8
DimensionReduction
8
shiny
7
SingleCell
7
Microarray
7
Normalization
7
r
7
Network
6
BatchEffect
6
ThirdPartyClient
6
GO
6
Proteomics
6
MassSpectrometry
6
GeneSetEnrichment
6
FlowCytometry
5
Classification
5
PrincipalComponent
5
Genetics
4
gene-expression
4
Regression
4
ReportWriting
4
Pathways
4
GraphAndNetwork
4
Bayesian
4
TimeCourse
3
data-visualization
3
transcriptomics
3
Alignment
3
TwoChannel
3
Survival
3
FeatureExtraction
3
Metabolomics
3
CellBasedAssays
3
reproducible-research
3
rna-seq-analysis
3
rna-seq-data
3
OneChannel
3
user-friendly
3
DNASeq
3
CRISPR
2
mRNAMicroarray
2
Coverage
2
AlternativeSplicing
2
rna-seq
2
core-package
2
DifferentialSplicing
2
bioconductor-package
2
human-cell-atlas
2
Reactome
2
gui
2
hacktoberfest
2
GeneTarget
2
transcriptome
2
DNAMethylation
2
KEGG
2
cancer
2
MethylationArray
2
BiologicalQuestion
2
Annotation
2
SequenceMatching
2
AnnotationData
2
BiomedicalInformatics
2
CellBiology
2
NetworkInference
2
GeneticVariability
2
SystemsBiology
2
FunctionalGenomics
2
Metagenomics
2
plotting
1
cbioportal
1
ggplot2
1
crispr
1
cancer-genomics
1
tracking
1
particles
1
evolution
1
microscopy
1
fluorescence
1
GeneRegulation
1
ProprietaryPlatforms
1
NetworkEnrichment
1
flow-cytometry
1
polyploidy
1