Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "GenePrediction" keyword
factR 1.4.0
Functional Annotation of Custom Transcriptomes3 versions - Latest release: 6 months ago - 1.8 thousand downloads total - 1 stars on GitHub - 1 maintainer
AlphaMissenseR 1.0.0
Accessing AlphaMissense Data Resources in R2 versions - Latest release: 21 days ago - 358 downloads total - 5 stars on GitHub - 1 maintainer
IsoformSwitchAnalyzeR 2.2.0
Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- a...3 versions - Latest release: 6 months ago - 28.3 thousand downloads total - 1 maintainer
RLassoCox 1.10.0
A reweighted Lasso-Cox by integrating gene interaction information3 versions - Latest release: 6 months ago - 3.15 thousand downloads total - 3 stars on GitHub - 1 maintainer
R3CPET 1.34.1
3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process4 versions - Latest release: 4 months ago - 12.8 thousand downloads total - 3 stars on GitHub - 1 maintainer
geneAttribution 1.28.0
Identification of candidate genes associated with genetic variation3 versions - Latest release: 6 months ago - 10 thousand downloads total - 1 maintainer
ZygosityPredictor 1.2.0
Package for prediction of zygosity for variants/genes in NGS data3 versions - Latest release: 6 months ago - 1.25 thousand downloads total - 1 maintainer
sigFeature 1.20.0
sigFeature: Significant feature selection using SVM-RFE & t-statistic3 versions - Latest release: 6 months ago - 12.7 thousand downloads total - 1 maintainer
EGAD 1.30.0
Extending guilt by association by degree3 versions - Latest release: 6 months ago - 13.4 thousand downloads total - 1 maintainer
coRdon 1.20.0
Codon Usage Analysis and Prediction of Gene Expressivity3 versions - Latest release: 6 months ago - 13 thousand downloads total - 17 stars on GitHub - 1 maintainer
GRridge 1.26.0 removed
Better prediction by use of co-data: Adaptive group-regularized ridge regression2 versions - Latest release: 6 months ago - 7.94 thousand downloads total - 1 maintainer
PDATK 1.10.0
Pancreatic Ductal Adenocarcinoma Tool-Kit3 versions - Latest release: 6 months ago - 3.37 thousand downloads total - 1 stars on GitHub - 1 maintainer
pfamAnalyzeR 1.2.0
Identification of domain isotypes in pfam data3 versions - Latest release: 6 months ago - 1 dependent package - 4.36 thousand downloads total - 1 stars on GitHub - 1 maintainer
TNBC.CMS 1.18.0
TNBC.CMS: Prediction of TNBC Consensus Molecular Subtypes3 versions - Latest release: 6 months ago - 5.19 thousand downloads total - 1 maintainer
AssessORF 1.20.0
Assess Gene Predictions Using Proteomics and Evolutionary Conservation3 versions - Latest release: 6 months ago - 6.79 thousand downloads total - 1 maintainer
HPiP 1.8.0
Host-Pathogen Interaction Prediction3 versions - Latest release: 6 months ago - 2.55 thousand downloads total - 3 stars on GitHub - 1 maintainer
PhenoGeneRanker 1.10.0
PhenoGeneRanker: A gene and phenotype prioritization tool3 versions - Latest release: 6 months ago - 2.65 thousand downloads total - 1 maintainer
Top 2.6% on bioconductor.org
3 versions - Latest release: 13 days ago - 9 dependent packages - 214 thousand downloads total - 1 maintainer
mixOmics 6.28.0
Omics Data Integration Project3 versions - Latest release: 13 days ago - 9 dependent packages - 214 thousand downloads total - 1 maintainer
timeOmics 1.16.0
Time-Course Multi-Omics data integration3 versions - Latest release: 13 days ago - 1 dependent package - 5.04 thousand downloads total - 21 stars on GitHub - 1 maintainer
Top 2.8% on bioconductor.org
3 versions - Latest release: 13 days ago - 7 dependent packages - 208 thousand downloads total - 1 maintainer
DECIPHER 3.0.0
Tools for curating, analyzing, and manipulating biological sequences3 versions - Latest release: 13 days ago - 7 dependent packages - 208 thousand downloads total - 1 maintainer
iNETgrate 1.2.0
Integrates DNA methylation data with gene expression in a single gene network2 versions - Latest release: 13 days ago - 970 downloads total - 65 stars on GitHub - 1 maintainer
SurfR 0.99.54
Surface Protein Prediction and Identification1 version - Latest release: 21 days ago - 129 downloads total - 0 stars on GitHub - 1 maintainer
Damsel 1.0.0
Damsel: an end to end analysis of DamID1 version - Latest release: 21 days ago - 0 stars on GitHub - 1 maintainer
IntramiRExploreR 1.24.0
Predicting Targets for Drosophila Intragenic miRNAs2 versions - Latest release: 6 months ago - 6.58 thousand downloads total - 0 stars on GitHub - 1 maintainer
circRNAprofiler 1.16.0
circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs2 versions - Latest release: 7 months ago - 6.56 thousand downloads total - 10 stars on GitHub - 1 maintainer
pathwayPCA 1.18.0
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection2 versions - Latest release: 6 months ago - 1 dependent package - 7.17 thousand downloads total - 11 stars on GitHub - 1 maintainer
RandomWalkRestartMH 1.22.0
Random walk with restart on multiplex and heterogeneous Networks2 versions - Latest release: 6 months ago - 1 dependent package - 9.31 thousand downloads total - 17 stars on GitHub - 1 maintainer
pram 1.18.0
Pooling RNA-seq datasets for assembling transcript models2 versions - Latest release: 6 months ago - 5.11 thousand downloads total - 1 stars on GitHub - 1 maintainer
MouseFM 1.12.0
In-silico methods for genetic finemapping in inbred mice2 versions - Latest release: 6 months ago - 4.98 thousand downloads total - 0 stars on GitHub - 1 maintainer
GAPGOM 1.16.0 removed
GAPGOM (novel Gene Annotation Prediction and other GO Metrics)1 version - Latest release: 7 months ago - 3.72 thousand downloads total - 2 stars on GitHub - 1 maintainer
Related Keywords
Software
30
GeneExpression
13
SystemsBiology
9
Classification
8
BiomedicalInformatics
8
FunctionalPrediction
7
Network
7
FunctionalGenomics
7
ImmunoOncology
7
Pathways
6
GraphAndNetwork
6
Microarray
5
MultipleComparison
5
RNASeq
5
Visualization
5
Regression
5
Survival
5
GeneSetEnrichment
5
Clustering
5
Transcriptomics
5
Proteomics
5
NetworkInference
5
Sequencing
5
DataImport
4
Genetics
4
SNP
4
Transcription
4
KEGG
4
Annotation
4
FeatureExtraction
3
GenomicVariation
3
Metagenomics
3
GO
3
Metabolomics
3
DimensionReduction
3
PrincipalComponent
3
GeneTarget
3
VariantAnnotation
3
AlternativeSplicing
3
StructuralPrediction
3
DifferentialExpression
3
GenomeAnnotation
2
MathematicalBiology
2
DNAMethylation
2
BatchEffect
2
QualityControl
2
StatisticalMethod
2
TranscriptomeVariant
2
Bayesian
2
mRNAMicroarray
2
SupportVectorMachine
2
Normalization
2
r-package
2
SomaticMutation
2
GenomeWideAssociation
2
Reactome
1
bioinformatics
1
complex-systems
1
computational-biology
1
multiplex-networks
1
BioCarta
1
qtl-mapping
1
Lipidomics
1
GeneSignaling
1
Epigenetics
1
CopyNumberVariation
1
CellBiology
1
networks
1
systems-biology
1
qtl
1
mouse
1
inbred-strains
1
BiologicalQuestion
1
ResearchField
1
Technology
1
inbred-mice
1
bioconductor-package
1
genome-annotation
1
gene-candidates
1
finemap
1
PatternLogic
1
transcript-model
1
rna-seq
1
custom-transcriptomes
1
functional-annotation
1
gtf
1
rna-seq-analysis
1
DifferentialSplicing
1
HiC
1
chia-pet
1
chromatin-interaction
1
dirichlet-process-mixtures
1
transcription-facto
1
NetworkEnrichment
1
Genetics CellBiology
1
Pharmacogenetics
1
Pharmacogenomics
1
ComparativeGenomics
1
TimeCourse
1
cluster
1