bioconductor.org "GenePrediction" keyword
View the packages on the bioconductor.org package registry that are tagged with the "GenePrediction" keyword.
IntramiRExploreR 1.30.0
Predicting Targets for Drosophila Intragenic miRNAs5 versions - Latest release: 2 months ago - 11.6 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 2.8% on bioconductor.org
5 versions - Latest release: 2 months ago - 7 dependent packages - 272 thousand downloads total - 1 maintainer
DECIPHER 3.4.0
Tools for curating, analyzing, and manipulating biological sequences5 versions - Latest release: 2 months ago - 7 dependent packages - 272 thousand downloads total - 1 maintainer
MouseFM 1.18.0
In-silico methods for genetic finemapping in inbred mice6 versions - Latest release: 3 months ago - 9.91 thousand downloads total - 0 stars on GitHub - 1 maintainer
DeepTarget 1.2.0
Deep characterization of cancer drugs2 versions - Latest release: 3 months ago - 2.29 thousand downloads total - 1 maintainer
circRNAprofiler 1.22.1
circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs6 versions - Latest release: about 2 months ago - 12.6 thousand downloads total - 10 stars on GitHub - 1 maintainer
coRdon 1.26.0
Codon Usage Analysis and Prediction of Gene Expressivity5 versions - Latest release: 3 months ago - 19.2 thousand downloads total - 22 stars on GitHub - 1 maintainer
Damsel 1.4.0
Damsel: an end to end analysis of DamID4 versions - Latest release: 3 months ago - 2.8 thousand downloads total - 0 stars on GitHub - 1 maintainer
SurfR 1.4.1
Surface Protein Prediction and Identification8 versions - Latest release: 24 days ago - 3.48 thousand downloads total - 0 stars on GitHub - 1 maintainer
AlphaMissenseR 1.4.0
Accessing AlphaMissense Data Resources in R5 versions - Latest release: 3 months ago - 3.74 thousand downloads total - 8 stars on GitHub - 1 maintainer
PDATK 1.16.1
Pancreatic Ductal Adenocarcinoma Tool-Kit6 versions - Latest release: 2 months ago - 7.75 thousand downloads total - 1 stars on GitHub - 1 maintainer
PhenoGeneRanker 1.16.0
PhenoGeneRanker: A gene and phenotype prioritization tool5 versions - Latest release: 3 months ago - 5.74 thousand downloads total - 1 maintainer
IsoformSwitchAnalyzeR 2.8.0
Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- a...5 versions - Latest release: 3 months ago - 37.7 thousand downloads total - 1 maintainer
Top 2.6% on bioconductor.org
5 versions - Latest release: 3 months ago - 9 dependent packages - 275 thousand downloads total - 1 maintainer
mixOmics 6.32.0
Omics Data Integration Project5 versions - Latest release: 3 months ago - 9 dependent packages - 275 thousand downloads total - 1 maintainer
HPiP 1.14.0
Host-Pathogen Interaction Prediction5 versions - Latest release: 3 months ago - 6.05 thousand downloads total - 3 stars on GitHub - 1 maintainer
pram 1.24.0
Pooling RNA-seq datasets for assembling transcript models5 versions - Latest release: 3 months ago - 9.18 thousand downloads total - 1 stars on GitHub - 1 maintainer
timeOmics 1.20.0
Time-Course Multi-Omics data integration5 versions - Latest release: 3 months ago - 1 dependent package - 9.42 thousand downloads total - 21 stars on GitHub - 1 maintainer
EGAD 1.36.0
Extending guilt by association by degree5 versions - Latest release: 3 months ago - 17.8 thousand downloads total - 1 maintainer
AssessORF 1.26.0
Assess Gene Predictions Using Proteomics and Evolutionary Conservation5 versions - Latest release: 3 months ago - 13.2 thousand downloads total - 1 maintainer
pfamAnalyzeR 1.8.0
Identification of domain isotypes in pfam data5 versions - Latest release: 3 months ago - 1 dependent package - 11.9 thousand downloads total - 1 stars on GitHub - 1 maintainer
R3CPET 1.40.0
3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process6 versions - Latest release: 3 months ago - 16.9 thousand downloads total - 3 stars on GitHub - 1 maintainer
ZygosityPredictor 1.8.0
Package for prediction of zygosity for variants/genes in NGS data5 versions - Latest release: 3 months ago - 4.17 thousand downloads total - 1 maintainer
factR 1.10.0
Functional Annotation of Custom Transcriptomes5 versions - Latest release: 3 months ago - 5.22 thousand downloads total - 1 stars on GitHub - 1 maintainer
sigFeature 1.26.0
sigFeature: Significant feature selection using SVM-RFE & t-statistic5 versions - Latest release: 3 months ago - 19.6 thousand downloads total - 1 maintainer
geneAttribution 1.34.0
Identification of candidate genes associated with genetic variation5 versions - Latest release: 3 months ago - 14.3 thousand downloads total - 1 maintainer
iNETgrate 1.6.0
Integrates DNA methylation data with gene expression in a single gene network4 versions - Latest release: 3 months ago - 4.25 thousand downloads total - 65 stars on GitHub - 1 maintainer
RLassoCox 1.16.0
A reweighted Lasso-Cox by integrating gene interaction information5 versions - Latest release: 3 months ago - 6.44 thousand downloads total - 3 stars on GitHub - 1 maintainer
pathwayPCA 1.24.0
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection5 versions - Latest release: 3 months ago - 1 dependent package - 11.6 thousand downloads total - 11 stars on GitHub - 1 maintainer
RandomWalkRestartMH 1.26.0 removed
Random walk with restart on multiplex and heterogeneous Networks4 versions - Latest release: 8 months ago - 1 dependent package - 10.7 thousand downloads total - 21 stars on GitHub - 1 maintainer
TNBC.CMS 1.20.0 removed
TNBC.CMS: Prediction of TNBC Consensus Molecular Subtypes3 versions - Latest release: about 1 year ago - 5.43 thousand downloads total - 1 maintainer
GRridge 1.26.0 removed
Better prediction by use of co-data: Adaptive group-regularized ridge regression2 versions - Latest release: over 1 year ago - 7.94 thousand downloads total - 1 maintainer
GAPGOM 1.16.0 removed
GAPGOM (novel Gene Annotation Prediction and other GO Metrics)1 version - Latest release: almost 2 years ago - 3.72 thousand downloads total - 2 stars on GitHub - 1 maintainer
Related Keywords
Software
31
GeneExpression
14
SystemsBiology
9
Classification
8
BiomedicalInformatics
8
ImmunoOncology
8
Network
7
FunctionalPrediction
7
Pathways
7
FunctionalGenomics
7
GraphAndNetwork
6
RNASeq
6
GeneSetEnrichment
6
Regression
5
Proteomics
5
NetworkInference
5
Survival
5
Transcriptomics
5
Microarray
5
MultipleComparison
5
Sequencing
5
Visualization
5
Clustering
5
Transcription
4
GeneTarget
4
Genetics
4
KEGG
4
Annotation
4
DataImport
4
DifferentialExpression
4
SNP
4
PrincipalComponent
3
GO
3
GenomicVariation
3
Metagenomics
3
VariantAnnotation
3
AlternativeSplicing
3
StructuralPrediction
3
Metabolomics
3
DimensionReduction
3
FeatureExtraction
3
SupportVectorMachine
2
mRNAMicroarray
2
TranscriptomeVariant
2
Normalization
2
SomaticMutation
2
GenomeAnnotation
2
Bayesian
2
QualityControl
2
r-package
2
GenomeWideAssociation
2
DNAMethylation
2
MathematicalBiology
2
StatisticalMethod
2
BatchEffect
2
systems-biology
1
inbred-mice
1
rna-seq-analysis
1
gtf
1
functional-annotation
1
custom-transcriptomes
1
inbred-strains
1
transcription-facto
1
dirichlet-process-mixtures
1
chromatin-interaction
1
chia-pet
1
HiC
1
mouse
1
ComparativeGenomics
1
NetworkEnrichment
1
time-series
1
multi-omics
1
networks
1
multiplex-networks
1
computational-biology
1
complex-systems
1
bioinformatics
1
Reactome
1
BioCarta
1
Lipidomics
1
GeneSignaling
1
Epigenetics
1
CopyNumberVariation
1
CellBiology
1
cran
1
core-services
1
PatternLogic
1
finemap
1
gene-candidates
1
integration
1
Genetics CellBiology
1
DifferentialMethylation
1
Alignment
1
Microbiome
1
PeakDetection
1
Pharmacogenomics
1
Pharmacogenetics
1
dge
1
surfaceome
1
surface
1