bioconductor.org "GeneTarget" keyword
DeepTarget 1.4.0
Deep characterization of cancer drugs3 versions - Latest release: 4 months ago - 4.01 thousand downloads total - 1 maintainer
Top 3.8% on bioconductor.org
7 versions - Latest release: 3 months ago - 130 thousand downloads total - 1 maintainer
RcisTarget 1.29.0
RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic re...7 versions - Latest release: 3 months ago - 130 thousand downloads total - 1 maintainer
crisprShiny 1.6.0
Exploring curated CRISPR gRNAs via Shiny4 versions - Latest release: 4 months ago - 4.6 thousand downloads total - 2 stars on GitHub - 1 maintainer
MetaboSignal 1.40.0
MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways7 versions - Latest release: 3 months ago - 22.3 thousand downloads total - 2 maintainers
SPICEY 1.0.0
Calculates cell type specificity from single cell data1 version - Latest release: 4 months ago - 1.03 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 7.7% on bioconductor.org
6 versions - Latest release: 4 months ago - 47.5 thousand downloads total - 2 maintainers
GDCRNATools 1.30.0
GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, mRNA, and miRNA data i...6 versions - Latest release: 4 months ago - 47.5 thousand downloads total - 2 maintainers
TOAST 1.24.0
Tools for the analysis of heterogeneous tissues6 versions - Latest release: 4 months ago - 3 dependent packages - 36.5 thousand downloads total - 8 stars on GitHub - 1 maintainer
ClusterFoldSimilarity 1.6.0
Calculate similarity of clusters from different single cell samples using foldchanges4 versions - Latest release: 3 months ago - 5.28 thousand downloads total - 1 maintainer
BayesKnockdown 1.36.0
BayesKnockdown: Posterior Probabilities for Edges from Knockdown Data6 versions - Latest release: 3 months ago - 18 thousand downloads total - 1 maintainer
NoRCE 1.22.0
NoRCE: Noncoding RNA Sets Cis Annotation and Enrichment6 versions - Latest release: 3 months ago - 10.7 thousand downloads total - 1 stars on GitHub - 1 maintainer
MouseFM 1.20.0
In-silico methods for genetic finemapping in inbred mice7 versions - Latest release: 3 months ago - 12.1 thousand downloads total - 0 stars on GitHub - 1 maintainer
RegEnrich 1.20.0
Gene regulator enrichment analysis8 versions - Latest release: 3 months ago - 15.1 thousand downloads total - 1 maintainer
cicero 1.28.0
Predict cis-co-accessibility from single-cell chromatin accessibility data6 versions - Latest release: 3 months ago - 39.3 thousand downloads total - 1 maintainer
betaHMM 1.6.0
A Hidden Markov Model Approach for Identifying Differentially Methylated Sites and Regions for Be...6 versions - Latest release: 3 months ago - 5.26 thousand downloads total - 1 maintainer
rnaEditr 1.20.0
Statistical analysis of RNA editing sites and hyper-editing regions6 versions - Latest release: 3 months ago - 9.58 thousand downloads total - 3 stars on GitHub - 1 maintainer
pageRank 1.20.0
Temporal and Multiplex PageRank for Gene Regulatory Network Analysis6 versions - Latest release: 4 months ago - 9.43 thousand downloads total - 0 stars on GitHub - 1 maintainer
nullranges 1.16.3
Generation of null ranges via bootstrapping or covariate matching7 versions - Latest release: 2 months ago - 1 dependent package - 16 thousand downloads total - 22 stars on GitHub - 1 maintainer
bioCancer 1.38.0
Interactive Multi-Omics Cancers Data Visualization and Analysis8 versions - Latest release: 4 months ago - 20 thousand downloads total - 21 stars on GitHub - 1 maintainer
rigvf 1.2.3
R interface to the IGVF Catalog5 versions - Latest release: about 1 month ago - 3.09 thousand downloads total - 0 stars on GitHub - 1 maintainer
FindIT2 1.16.0
find influential TF and Target based on multi-omics data6 versions - Latest release: 3 months ago - 9.08 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 9.8% on bioconductor.org
7 versions - Latest release: 3 months ago - 1 dependent package - 40.1 thousand downloads total - 1 maintainer
EGSEA 1.38.0
Ensemble of Gene Set Enrichment Analyses7 versions - Latest release: 3 months ago - 1 dependent package - 40.1 thousand downloads total - 1 maintainer
epiregulon 2.0.2
Gene regulatory network inference from single cell epigenomic data6 versions - Latest release: 3 months ago - 1 dependent package - 5.53 thousand downloads total - 12 stars on GitHub - 1 maintainer
Site2Target 1.2.0
An R package to associate peaks and target genes2 versions - Latest release: 3 months ago - 2.45 thousand downloads total - 1 maintainer
spatialHeatmap 2.16.3
spatialHeatmap: Visualizing Spatial Assays in Anatomical Images and Large-Scale Data Extensions16 versions - Latest release: about 1 month ago - 14.4 thousand downloads total - 4 stars on GitHub - 1 maintainer
pathwayPCA 1.26.0
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection6 versions - Latest release: 3 months ago - 1 dependent package - 15.2 thousand downloads total - 11 stars on GitHub - 1 maintainer
DifferentialRegulation 2.8.0
Differentially regulated genes from scRNA-seq data10 versions - Latest release: 4 months ago - 8.28 thousand downloads total - 11 stars on GitHub - 1 maintainer
QRscore 1.2.0
Quantile Rank Score2 versions - Latest release: 4 months ago - 2.69 thousand downloads total - 0 stars on GitHub - 1 maintainer
crisprDesign 1.12.0
Comprehensive design of CRISPR gRNAs for nucleases and base editors6 versions - Latest release: 3 months ago - 3 dependent packages - 13.1 thousand downloads total - 24 stars on GitHub - 1 maintainer
RCAS 1.36.0
RNA Centric Annotation System7 versions - Latest release: 4 months ago - 1 dependent package - 24 thousand downloads total - 1 maintainer
SBGNview 1.24.0
"SBGNview: Data Analysis, Integration and Visualization on SBGN Pathways"6 versions - Latest release: 4 months ago - 16.9 thousand downloads total - 28 stars on GitHub - 1 maintainer
enrichTF 1.20.0 removed
Transcription Factors Enrichment Analysis3 versions - Latest release: almost 2 years ago - 7.2 thousand downloads total - 2 stars on GitHub - 1 maintainer
crisprVerse 1.12.0
Easily install and load the crisprVerse ecosystem for CRISPR gRNA design6 versions - Latest release: 4 months ago - 9.25 thousand downloads total - 7 stars on GitHub - 1 maintainer
wppi 1.18.0
Weighting protein-protein interactions7 versions - Latest release: 3 months ago - 11.1 thousand downloads total - 1 stars on GitHub - 1 maintainer
epiregulon.extra 1.6.0
Companion package to epiregulon with additional plotting, differential and graph functions7 versions - Latest release: 4 months ago - 5.28 thousand downloads total - 0 stars on GitHub - 1 maintainer
miRSM 2.6.0
Inferring miRNA sponge modules in heterogeneous data7 versions - Latest release: 4 months ago - 12.6 thousand downloads total - 4 stars on GitHub - 1 maintainer
crupR 1.2.0
An R package to predict condition-specific enhancers from ChIP-seq data2 versions - Latest release: 3 months ago - 2.37 thousand downloads total - 0 stars on GitHub - 1 maintainer
signifinder 1.12.0
Collection and implementation of public transcriptional cancer signatures7 versions - Latest release: 4 months ago - 6.42 thousand downloads total - 9 stars on GitHub - 1 maintainer
oppti 1.24.0
Outlier Protein and Phosphosite Target Identifier6 versions - Latest release: 4 months ago - 8.47 thousand downloads total - 2 stars on GitHub - 1 maintainer
TENET 1.2.0
R package for TENET (Tracing regulatory Element Networks using Epigenetic Traits) to identify key...3 versions - Latest release: 3 months ago - 2.42 thousand downloads total - 1 stars on GitHub - 1 maintainer
PanomiR 1.14.0
Detection of miRNAs that regulate interacting groups of pathways6 versions - Latest release: 4 months ago - 7.78 thousand downloads total - 3 stars on GitHub - 1 maintainer
gINTomics 1.6.0
Multi-Omics data integration6 versions - Latest release: about 1 month ago - 3.82 thousand downloads total - 3 stars on GitHub - 1 maintainer
sRACIPE 2.2.0
Systems biology tool to simulate gene regulatory circuits7 versions - Latest release: 3 months ago - 13.2 thousand downloads total - 0 stars on GitHub - 1 maintainer
SVP 1.2.1
Predicting cell states and their variability in single-cell or spatial omics data4 versions - Latest release: 3 months ago - 3.66 thousand downloads total - 12 stars on GitHub - 1 maintainer
distinct 1.22.0
distinct: a method for differential analyses via hierarchical permutation tests7 versions - Latest release: 4 months ago - 2 dependent packages - 18.3 thousand downloads total - 11 stars on GitHub - 1 maintainer
CaMutQC 1.6.0
An R Package for Comprehensive Filtration and Selection of Cancer Somatic Mutations7 versions - Latest release: 4 months ago - 5.22 thousand downloads total - 7 stars on GitHub - 1 maintainer
IntramiRExploreR 1.32.0
Predicting Targets for Drosophila Intragenic miRNAs6 versions - Latest release: 3 months ago - 13.7 thousand downloads total - 0 stars on GitHub - 1 maintainer
crisprViz 1.12.0
Visualization Functions for CRISPR gRNAs6 versions - Latest release: 4 months ago - 2 dependent packages - 10.2 thousand downloads total - 9 stars on GitHub - 1 maintainer
brainflowprobes 1.20.0 removed
Plots and annotation for choosing BrainFlow target probe sequence4 versions - Latest release: over 1 year ago - 5.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
MethReg 1.20.0
Assessing the regulatory potential of DNA methylation regions or sites on gene transcription7 versions - Latest release: 3 months ago - 10.7 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 9.3% on bioconductor.org
5 versions - Latest release: 11 months ago - 1 dependent package - 42.4 thousand downloads total - 1 maintainer
MAGeCKFlute 2.12.0 removed
Integrative Analysis Pipeline for Pooled CRISPR Functional Genetic Screens5 versions - Latest release: 11 months ago - 1 dependent package - 42.4 thousand downloads total - 1 maintainer
gespeR 1.40.0 removed
Gene-Specific Phenotype EstimatoR5 versions - Latest release: 11 months ago - 19.3 thousand downloads total - 1 maintainer
Pi 2.18.0 removed
Leveraging Genetic Evidence to Prioritise Drug Targets at the Gene and Pathway Level4 versions - Latest release: over 1 year ago - 19 thousand downloads total - 1 maintainer
eegc 1.30.0 removed
Engineering Evaluation by Gene Categorization (eegc)3 versions - Latest release: almost 2 years ago - 10.4 thousand downloads total - 1 maintainer
pwOmics 1.36.0 removed
Pathway-based data integration of omics data3 versions - Latest release: almost 2 years ago - 15.7 thousand downloads total - 1 maintainer
SEPIRA 1.22.0 removed
Systems EPigenomics Inference of Regulatory Activity2 versions - Latest release: over 2 years ago - 5.66 thousand downloads total - 1 maintainer
FCBF 2.12.0 removed
Fast Correlation Based Filter for Feature Selection3 versions - Latest release: almost 2 years ago - 1 dependent package - 7.98 thousand downloads total - 1 maintainer
Related Keywords
Software
56
GeneExpression
31
DifferentialExpression
15
GeneSetEnrichment
15
RNASeq
14
Transcription
14
GeneRegulation
14
Network
14
Visualization
13
SingleCell
10
Microarray
10
FunctionalGenomics
10
Pathways
10
MultipleComparison
9
Transcriptomics
9
Epigenetics
9
ImmunoOncology
9
Sequencing
9
GraphAndNetwork
9
Genetics
8
SystemsBiology
7
BiomedicalInformatics
6
GeneSignaling
6
CRISPR
6
KEGG
5
GO
5
Regression
5
NetworkInference
5
StatisticalMethod
5
Annotation
5
ATACSeq
4
GenePrediction
4
Spatial
4
FeatureExtraction
4
Clustering
4
crispr
4
MethylationArray
4
DNAMethylation
4
Proteomics
4
Survival
4
bioconductor
4
crispr-design
4
Metabolomics
3
CellBasedAssays
3
Classification
3
Coverage
3
grna-sequences
3
grna-sequence
3
grna
3
CellBiology
3
ChIPSeq
3
GenomeWideAssociation
3
HistoneModification
3
crispr-analysis
3
NetworkEnrichment
3
DifferentialMethylation
3
GenomeAnnotation
3
MotifAnnotation
3
GenomicVariation
3
Reactome
2
DifferentialPeakCalling
2
CopyNumberVariation
2
bioconductor-package
2
DataRepresentation
2
crispr-target
2
GUI
2
Bayesian
2
FlowCytometry
2
QualityControl
2
Normalization
2
sgrna-design
2
FunctionalPrediction
2
TwoChannel
2
sgrna
2
VariantAnnotation
2
SNP
2
ReportWriting
2
HiddenMarkovModel
2
MathematicalBiology
2
DimensionReduction
2
cancer
1
miRNA
1
MethylSeq
1
ppi-networks
1
random-walk-with-restart
1
ChipOnChip
1
PeakDetection
1
modules
1
mirna-targets
1
mirna-sponge
1
mirna
1
cerna
1
LinkageDisequilibrium
1
HiC
1
Preprocessing
1
PooledScreens
1
rstats
1
ExperimentalDesign
1
visualization
1
somatic-mutations
1