bioconductor.org "GeneticVariability" keyword
OMICsPCA 1.28.0
An R package for quantitative integration and analysis of multiple omics assays from heterogeneou...6 versions - Latest release: 3 months ago - 16.6 thousand downloads total - 1 maintainer
FRGEpistasis 1.46.0
Epistasis Analysis for Quantitative Traits by Functional Regression Model6 versions - Latest release: 3 months ago - 21.9 thousand downloads total - 1 maintainer
Top 9.0% on bioconductor.org
7 versions - Latest release: about 10 hours ago - 3 dependent packages - 41 thousand downloads total - 1 maintainer
RTN 2.34.1
RTN: Reconstruction of Transcriptional regulatory Networks and analysis of regulons7 versions - Latest release: about 10 hours ago - 3 dependent packages - 41 thousand downloads total - 1 maintainer
Top 1.8% on bioconductor.org
8 versions - Latest release: 4 months ago - 14 dependent packages - 417 thousand downloads total - 2 maintainers
Rsubread 2.24.0
Mapping, quantification and variant analysis of sequencing data8 versions - Latest release: 4 months ago - 14 dependent packages - 417 thousand downloads total - 2 maintainers
SIAMCAT 2.14.0
Statistical Inference of Associations between Microbial Communities And host phenoTypes6 versions - Latest release: 3 months ago - 21.8 thousand downloads total - 1 maintainer
gmoviz 1.22.0
Seamless visualization of complex genomic variations in GMOs and edited cell lines6 versions - Latest release: 3 months ago - 10.6 thousand downloads total - 1 maintainer
gwasurvivr 1.28.0
gwasurvivr: an R package for genome wide survival analysis6 versions - Latest release: 3 months ago - 17.4 thousand downloads total - 13 stars on GitHub - 1 maintainer
BBCAnalyzer 1.40.0
BBCAnalyzer: an R/Bioconductor package for visualizing base counts6 versions - Latest release: 3 months ago - 21.8 thousand downloads total - 1 maintainer
Top 3.0% on bioconductor.org
7 versions - Latest release: 3 months ago - 11 dependent packages - 249 thousand downloads total - 71 stars on GitHub - 1 maintainer
metagenomeSeq 1.52.0
Statistical analysis for sparse high-throughput sequencing7 versions - Latest release: 3 months ago - 11 dependent packages - 249 thousand downloads total - 71 stars on GitHub - 1 maintainer
Top 4.1% on bioconductor.org
6 versions - Latest release: 3 months ago - 4 dependent packages - 139 thousand downloads total - 18 stars on GitHub - 1 maintainer
GWASTools 1.56.0
Tools for Genome Wide Association Studies6 versions - Latest release: 3 months ago - 4 dependent packages - 139 thousand downloads total - 18 stars on GitHub - 1 maintainer
VariantTools 1.51.0
Tools for Exploratory Analysis of Variant Calls6 versions - Latest release: 3 months ago - 2 dependent packages - 39.9 thousand downloads total - 1 maintainer
Top 2.7% on bioconductor.org
6 versions - Latest release: 3 months ago - 15 dependent packages - 495 thousand downloads total - 1 maintainer
snpStats 1.60.0
SnpMatrix and XSnpMatrix classes and methods6 versions - Latest release: 3 months ago - 15 dependent packages - 495 thousand downloads total - 1 maintainer
martini 1.30.0
GWAS Incorporating Networks6 versions - Latest release: 3 months ago - 14.9 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 4.6% on bioconductor.org
6 versions - Latest release: 4 months ago - 1 dependent package - 94.4 thousand downloads total - 3 stars on GitHub - 1 maintainer
SeqVarTools 1.48.0
Tools for variant data6 versions - Latest release: 4 months ago - 1 dependent package - 94.4 thousand downloads total - 3 stars on GitHub - 1 maintainer
epistasisGA 1.12.0
An R package to identify multi-snp effects in nuclear family studies using the GADGETS method6 versions - Latest release: 3 months ago - 7.1 thousand downloads total - 1 stars on GitHub - 1 maintainer
trio 3.48.0
Testing of SNPs and SNP Interactions in Case-Parent Trio Studies6 versions - Latest release: 3 months ago - 32.7 thousand downloads total - 1 maintainer
CrispRVariants 1.38.0
Tools for counting and visualising mutations in a target location6 versions - Latest release: 3 months ago - 26.2 thousand downloads total - 1 maintainer
Top 8.5% on bioconductor.org
6 versions - Latest release: 3 months ago - 2 dependent packages - 47.7 thousand downloads total - 1 maintainer
deepSNV 1.56.0
Detection of subclonal SNVs in deep sequencing data.6 versions - Latest release: 3 months ago - 2 dependent packages - 47.7 thousand downloads total - 1 maintainer
RIVER 1.34.0
R package for RIVER (RNA-Informed Variant Effect on Regulation)6 versions - Latest release: 3 months ago - 16.1 thousand downloads total - 10 stars on GitHub - 1 maintainer
GBScleanR 2.4.5
Error correction tool for noisy genotyping by sequencing (GBS) data12 versions - Latest release: 13 days ago - 8.64 thousand downloads total - 4 stars on GitHub - 1 maintainer
mutscan 1.0.0
Preprocessing and Analysis of Deep Mutational Scanning Data1 version - Latest release: 4 months ago - 956 downloads total - 14 stars on GitHub - 1 maintainer
Top 4.6% on bioconductor.org
6 versions - Latest release: 3 months ago - 1 dependent package - 70.5 thousand downloads total - 3 stars on GitHub - 1 maintainer
qpgraph 2.44.0
Estimation of Genetic and Molecular Regulatory Networks from High-Throughput Genomics Data6 versions - Latest release: 3 months ago - 1 dependent package - 70.5 thousand downloads total - 3 stars on GitHub - 1 maintainer
GSReg 1.44.0
Gene Set Regulation (GS-Reg)6 versions - Latest release: 3 months ago - 21.5 thousand downloads total - 2 maintainers
MAGAR 1.18.0
MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation an...6 versions - Latest release: 3 months ago - 10.3 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 3.3% on bioconductor.org
7 versions - Latest release: 3 months ago - 5 dependent packages - 183 thousand downloads total - 4 maintainers
missMethyl 1.44.0
Analysing Illumina HumanMethylation BeadChip Data7 versions - Latest release: 3 months ago - 5 dependent packages - 183 thousand downloads total - 4 maintainers
TVTB 1.36.0
TVTB: The VCF Tool Box8 versions - Latest release: 4 months ago - 16.6 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 9.0% on bioconductor.org
6 versions - Latest release: 3 months ago - 34.3 thousand downloads total - 1 maintainer
RLMM 1.72.0
A Genotype Calling Algorithm for Affymetrix SNP Arrays6 versions - Latest release: 3 months ago - 34.3 thousand downloads total - 1 maintainer
Top 2.1% on bioconductor.org
6 versions - Latest release: 3 months ago - 23 dependent packages - 1.07 million downloads total - 1 maintainer
phyloseq 1.54.0
Handling and analysis of high-throughput microbiome census data6 versions - Latest release: 3 months ago - 23 dependent packages - 1.07 million downloads total - 1 maintainer
BUMHMM 1.34.0
Computational pipeline for computing probability of modification from structure probing experimen...6 versions - Latest release: 3 months ago - 16.7 thousand downloads total - 1 maintainer
microSTASIS 1.10.0
Microbiota STability ASsessment via Iterative cluStering6 versions - Latest release: 3 months ago - 5.68 thousand downloads total - 1 maintainer
scQTLtools 1.2.3
scQTLtools: an R/Bioconductor package for comprehensive identification and visualization of singl...5 versions - Latest release: 30 days ago - 2.28 thousand downloads total - 0 stars on GitHub - 1 maintainer
hapFabia 1.52.0
hapFabia: Identification of very short segments of identity by descent (IBD) characterized by rar...6 versions - Latest release: 3 months ago - 29.3 thousand downloads total - 1 maintainer
Top 5.2% on bioconductor.org
6 versions - Latest release: 3 months ago - 1 dependent package - 83 thousand downloads total - 40 stars on GitHub - 1 maintainer
GENESIS 2.40.0
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzi...6 versions - Latest release: 3 months ago - 1 dependent package - 83 thousand downloads total - 40 stars on GitHub - 1 maintainer
QSutils 1.28.0
Quasispecies Diversity6 versions - Latest release: 3 months ago - 27.6 thousand downloads total - 1 maintainer
Top 7.5% on bioconductor.org
6 versions - Latest release: 3 months ago - 47.7 thousand downloads total - 1 maintainer
chopsticks 1.76.0
The 'snp.matrix' and 'X.snp.matrix' Classes6 versions - Latest release: 3 months ago - 47.7 thousand downloads total - 1 maintainer
microbiomeExplorer 1.20.0
Microbiome Exploration App6 versions - Latest release: 3 months ago - 13.3 thousand downloads total - 1 maintainer
Clomial 1.46.0
Infers clonal composition of a tumor6 versions - Latest release: 3 months ago - 22.6 thousand downloads total - 1 maintainer
ISoLDE 1.38.0
Integrative Statistics of alleLe Dependent Expression6 versions - Latest release: 3 months ago - 14.4 thousand downloads total - 1 maintainer
appreci8R 1.28.0
appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity an...7 versions - Latest release: 3 months ago - 14 thousand downloads total - 1 maintainer
omicsPrint 1.30.0
Cross omic genetic fingerprinting6 versions - Latest release: 3 months ago - 14.6 thousand downloads total - 1 maintainer
RAIDS 1.8.0
Robust Ancestry Inference using Data Synthesis5 versions - Latest release: 3 months ago - 5.33 thousand downloads total - 5 stars on GitHub - 1 maintainer
trigger 1.53.0 removed
Transcriptional Regulatory Inference from Genetics of Gene ExpRession5 versions - Latest release: 10 months ago - 27.7 thousand downloads total - 1 maintainer
GeneGeneInteR 1.33.0 removed
Tools for Testing Gene-Gene Interaction at the Gene Level5 versions - Latest release: 10 months ago - 14.9 thousand downloads total - 1 maintainer
GeneAccord 1.18.0 removed
Detection of clonally exclusive gene or pathway pairs in a cohort of cancer patients1 version - Latest release: over 2 years ago - 4.41 thousand downloads total - 2 stars on GitHub - 1 maintainer
BiocOncoTK 1.26.0 removed
Bioconductor components for general cancer genomics5 versions - Latest release: over 1 year ago - 13.4 thousand downloads total - 1 maintainer
Top 9.5% on bioconductor.org
3 versions - Latest release: almost 2 years ago - 38.5 thousand downloads total - 1 maintainer
beadarraySNP 1.70.0 removed
Normalization and reporting of Illumina SNP bead arrays3 versions - Latest release: almost 2 years ago - 38.5 thousand downloads total - 1 maintainer
pathVar 1.34.0 removed
Methods to Find Pathways with Significantly Different Variability3 versions - Latest release: almost 2 years ago - 9.98 thousand downloads total - 1 maintainer
Related Keywords
Software
47
SNP
25
Genetics
25
Sequencing
21
ImmunoOncology
13
Clustering
10
GeneExpression
10
MultipleComparison
9
Microarray
8
GenomicVariation
8
Visualization
8
Transcription
8
GeneRegulation
7
Preprocessing
6
QualityControl
6
Regression
6
Microbiome
5
GeneSetEnrichment
5
Classification
5
DataImport
5
BiomedicalInformatics
5
Coverage
4
Metagenomics
4
GenomeWideAssociation
4
Normalization
4
FeatureExtraction
4
VariantDetection
4
SequenceMatching
4
DNAMethylation
4
Pathways
4
Epigenetics
4
FunctionalGenomics
4
Alignment
4
GraphAndNetwork
4
DifferentialExpression
3
SystemsBiology
3
DNASeq
3
PrincipalComponent
3
SingleCell
3
DataRepresentation
3
NetworkInference
3
Network
3
VariantAnnotation
3
CopyNumberVariation
3
RNASeq
3
Transcriptomics
3
Bayesian
3
DimensionReduction
3
WholeGenome
2
r-package
2
MathematicalBiology
2
genomics
2
TwoChannel
2
MethylationArray
2
DifferentialMethylation
2
GUI
2
CpGIsland
2
BiocViews
2
HiddenMarkovModel
2
StructuralPrediction
1
rna-sequencing
1
OneChannel
1
mRNAMicroarray
1
MethylSeq
1
BatchEffect
1
AlternativeSplicing
1
mutual
1
whole-genome-sequencing
1
PatternLogic
1
SomaticMutation
1
cancer
1
clonal
1
cooccurrence
1
rna-seq
1
r-language
1
exclusivity
1
inference
1
exome-sequencing
1
cancer-genomics
1
ancestry
1
TargetedResequencing
1
ExomeSeq
1
SNPsAndGeneticVariability
1
StatisticalMethod
1
variant
1
CRISPR
1
systems-biology
1
snps
1
network-analysis
1
gwas
1
bioinformatics
1
Survival
1
Pharmacogenomics
1
MultipleSequenceAlignment
1
IndelDetection
1
GenomeAnnotation
1
GeneFusionDetection
1
ChIPSeq
1
NetworkEnrichment
1
Workflow
1