bioconductor.org "GeneticVariability" keyword
View the packages on the bioconductor.org package registry that are tagged with the "GeneticVariability" keyword.
GBScleanR 2.2.0
Error correction tool for noisy genotyping by sequencing (GBS) data9 versions - Latest release: 3 months ago - 6.9 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 3.3% on bioconductor.org
6 versions - Latest release: 3 months ago - 5 dependent packages - 151 thousand downloads total - 4 maintainers
missMethyl 1.42.0
Analysing Illumina HumanMethylation BeadChip Data6 versions - Latest release: 3 months ago - 5 dependent packages - 151 thousand downloads total - 4 maintainers
Top 9.0% on bioconductor.org
5 versions - Latest release: 2 months ago - 32 thousand downloads total - 1 maintainer
RLMM 1.70.0
A Genotype Calling Algorithm for Affymetrix SNP Arrays5 versions - Latest release: 2 months ago - 32 thousand downloads total - 1 maintainer
Top 1.8% on bioconductor.org
7 versions - Latest release: 3 months ago - 14 dependent packages - 363 thousand downloads total - 2 maintainers
Rsubread 2.22.1
Mapping, quantification and variant analysis of sequencing data7 versions - Latest release: 3 months ago - 14 dependent packages - 363 thousand downloads total - 2 maintainers
Top 2.7% on bioconductor.org
5 versions - Latest release: 2 months ago - 15 dependent packages - 443 thousand downloads total - 1 maintainer
snpStats 1.58.0
SnpMatrix and XSnpMatrix classes and methods5 versions - Latest release: 2 months ago - 15 dependent packages - 443 thousand downloads total - 1 maintainer
Top 4.1% on bioconductor.org
5 versions - Latest release: 3 months ago - 4 dependent packages - 114 thousand downloads total - 18 stars on GitHub - 1 maintainer
GWASTools 1.54.0
Tools for Genome Wide Association Studies5 versions - Latest release: 3 months ago - 4 dependent packages - 114 thousand downloads total - 18 stars on GitHub - 1 maintainer
Top 4.6% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 72 thousand downloads total - 3 stars on GitHub - 1 maintainer
SeqVarTools 1.46.0
Tools for variant data5 versions - Latest release: 3 months ago - 1 dependent package - 72 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 2.1% on bioconductor.org
5 versions - Latest release: 2 months ago - 23 dependent packages - 831 thousand downloads total - 1 maintainer
phyloseq 1.52.0
Handling and analysis of high-throughput microbiome census data5 versions - Latest release: 2 months ago - 23 dependent packages - 831 thousand downloads total - 1 maintainer
RIVER 1.32.0
R package for RIVER (RNA-Informed Variant Effect on Regulation)5 versions - Latest release: 3 months ago - 13.5 thousand downloads total - 10 stars on GitHub - 1 maintainer
scQTLtools 1.0.3
An R package for single-cell eQTL analysis and visualization3 versions - Latest release: about 1 month ago - 1.44 thousand downloads total - 0 stars on GitHub - 1 maintainer
TVTB 1.34.0
TVTB: The VCF Tool Box6 versions - Latest release: 2 months ago - 13.5 thousand downloads total - 2 stars on GitHub - 1 maintainer
GSReg 1.42.0
Gene Set Regulation (GS-Reg)5 versions - Latest release: 2 months ago - 19 thousand downloads total - 2 maintainers
MAGAR 1.16.0
MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation an...5 versions - Latest release: 2 months ago - 8.23 thousand downloads total - 0 stars on GitHub - 1 maintainer
VariantTools 1.50.0
Tools for Exploratory Analysis of Variant Calls5 versions - Latest release: 3 months ago - 2 dependent packages - 34.6 thousand downloads total - 1 maintainer
epistasisGA 1.10.0
An R package to identify multi-snp effects in nuclear family studies using the GADGETS method5 versions - Latest release: 3 months ago - 5 thousand downloads total - 1 stars on GitHub - 1 maintainer
GeneGeneInteR 1.33.0
Tools for Testing Gene-Gene Interaction at the Gene Level5 versions - Latest release: 3 months ago - 14.5 thousand downloads total - 1 maintainer
RAIDS 1.6.1
Robust Ancestry Inference using Data Synthesis4 versions - Latest release: 3 months ago - 4.1 thousand downloads total - 5 stars on GitHub - 1 maintainer
hapFabia 1.50.0
hapFabia: Identification of very short segments of identity by descent (IBD) characterized by rar...5 versions - Latest release: 3 months ago - 26.7 thousand downloads total - 1 maintainer
gwasurvivr 1.26.0
gwasurvivr: an R package for genome wide survival analysis5 versions - Latest release: 3 months ago - 14.4 thousand downloads total - 12 stars on GitHub - 1 maintainer
Clomial 1.44.0
Infers clonal composition of a tumor5 versions - Latest release: 3 months ago - 20.4 thousand downloads total - 1 maintainer
Top 5.2% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 66.5 thousand downloads total - 38 stars on GitHub - 1 maintainer
GENESIS 2.38.0
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzi...5 versions - Latest release: 3 months ago - 1 dependent package - 66.5 thousand downloads total - 38 stars on GitHub - 1 maintainer
CrispRVariants 1.36.0
Tools for counting and visualising mutations in a target location5 versions - Latest release: 3 months ago - 21.9 thousand downloads total - 1 maintainer
Top 4.6% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 61.3 thousand downloads total - 3 stars on GitHub - 1 maintainer
qpgraph 2.42.0
Estimation of Genetic and Molecular Regulatory Networks from High-Throughput Genomics Data5 versions - Latest release: 3 months ago - 1 dependent package - 61.3 thousand downloads total - 3 stars on GitHub - 1 maintainer
gmoviz 1.20.0
Seamless visualization of complex genomic variations in GMOs and edited cell lines5 versions - Latest release: 3 months ago - 7.98 thousand downloads total - 1 maintainer
trigger 1.53.0
Transcriptional Regulatory Inference from Genetics of Gene ExpRession5 versions - Latest release: 3 months ago - 26.9 thousand downloads total - 1 maintainer
trio 3.46.0
Testing of SNPs and SNP Interactions in Case-Parent Trio Studies5 versions - Latest release: 3 months ago - 29 thousand downloads total - 1 maintainer
BBCAnalyzer 1.38.0
BBCAnalyzer: an R/Bioconductor package for visualizing base counts5 versions - Latest release: 3 months ago - 18.5 thousand downloads total - 1 maintainer
Top 9.0% on bioconductor.org
5 versions - Latest release: 3 months ago - 3 dependent packages - 34.9 thousand downloads total - 1 maintainer
RTN 2.32.0
RTN: Reconstruction of Transcriptional regulatory Networks and analysis of regulons5 versions - Latest release: 3 months ago - 3 dependent packages - 34.9 thousand downloads total - 1 maintainer
OMICsPCA 1.26.0
An R package for quantitative integration and analysis of multiple omics assays from heterogeneou...5 versions - Latest release: 3 months ago - 11.3 thousand downloads total - 1 maintainer
Top 8.5% on bioconductor.org
5 versions - Latest release: 3 months ago - 2 dependent packages - 42 thousand downloads total - 1 maintainer
deepSNV 1.54.0
Detection of subclonal SNVs in deep sequencing data.5 versions - Latest release: 3 months ago - 2 dependent packages - 42 thousand downloads total - 1 maintainer
SIAMCAT 2.12.0
Statistical Inference of Associations between Microbial Communities And host phenoTypes5 versions - Latest release: 3 months ago - 16.7 thousand downloads total - 1 maintainer
omicsPrint 1.28.0
Cross omic genetic fingerprinting5 versions - Latest release: 3 months ago - 11.9 thousand downloads total - 1 maintainer
QSutils 1.26.0
Quasispecies Diversity5 versions - Latest release: 3 months ago - 24.9 thousand downloads total - 1 maintainer
BUMHMM 1.32.0
Computational pipeline for computing probability of modification from structure probing experimen...5 versions - Latest release: 3 months ago - 13.9 thousand downloads total - 1 maintainer
appreci8R 1.26.0
appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity an...6 versions - Latest release: 3 months ago - 11.6 thousand downloads total - 1 maintainer
Top 7.5% on bioconductor.org
5 versions - Latest release: 3 months ago - 45.3 thousand downloads total - 1 maintainer
chopsticks 1.74.0
The 'snp.matrix' and 'X.snp.matrix' Classes5 versions - Latest release: 3 months ago - 45.3 thousand downloads total - 1 maintainer
microSTASIS 1.8.0
Microbiota STability ASsessment via Iterative cluStering5 versions - Latest release: 3 months ago - 4.6 thousand downloads total - 1 maintainer
ISoLDE 1.36.0
Integrative Statistics of alleLe Dependent Expression5 versions - Latest release: 3 months ago - 12.5 thousand downloads total - 1 maintainer
microbiomeExplorer 1.18.0
Microbiome Exploration App5 versions - Latest release: 3 months ago - 11.3 thousand downloads total - 1 maintainer
FRGEpistasis 1.44.0
Epistasis Analysis for Quantitative Traits by Functional Regression Model5 versions - Latest release: 3 months ago - 19.5 thousand downloads total - 1 maintainer
martini 1.28.0
GWAS Incorporating Networks5 versions - Latest release: 3 months ago - 11.9 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 3.0% on bioconductor.org
6 versions - Latest release: 3 months ago - 11 dependent packages - 185 thousand downloads total - 69 stars on GitHub - 1 maintainer
metagenomeSeq 1.50.0
Statistical analysis for sparse high-throughput sequencing6 versions - Latest release: 3 months ago - 11 dependent packages - 185 thousand downloads total - 69 stars on GitHub - 1 maintainer
BiocOncoTK 1.26.0 removed
Bioconductor components for general cancer genomics5 versions - Latest release: 8 months ago - 13.4 thousand downloads total - 1 maintainer
GeneAccord 1.18.0 removed
Detection of clonally exclusive gene or pathway pairs in a cohort of cancer patients1 version - Latest release: almost 2 years ago - 4.41 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 9.5% on bioconductor.org
3 versions - Latest release: about 1 year ago - 38.5 thousand downloads total - 1 maintainer
beadarraySNP 1.70.0 removed
Normalization and reporting of Illumina SNP bead arrays3 versions - Latest release: about 1 year ago - 38.5 thousand downloads total - 1 maintainer
pathVar 1.34.0 removed
Methods to Find Pathways with Significantly Different Variability3 versions - Latest release: about 1 year ago - 9.98 thousand downloads total - 1 maintainer
Related Keywords
Software
46
Genetics
25
SNP
25
Sequencing
21
ImmunoOncology
13
Clustering
10
GeneExpression
10
MultipleComparison
9
Microarray
8
Visualization
8
Transcription
8
GenomicVariation
7
GeneRegulation
7
Regression
6
QualityControl
6
GeneSetEnrichment
5
BiomedicalInformatics
5
Microbiome
5
Classification
5
DataImport
5
Coverage
4
FunctionalGenomics
4
Metagenomics
4
VariantDetection
4
SequenceMatching
4
Pathways
4
Preprocessing
4
Epigenetics
4
GraphAndNetwork
4
FeatureExtraction
4
GenomeWideAssociation
4
Alignment
4
DNAMethylation
4
Normalization
4
RNASeq
3
DifferentialExpression
3
NetworkInference
3
PrincipalComponent
3
DimensionReduction
3
DNASeq
3
Network
3
CopyNumberVariation
3
DataRepresentation
3
SingleCell
3
VariantAnnotation
3
Bayesian
3
SystemsBiology
3
Transcriptomics
3
genomics
2
r-package
2
DifferentialMethylation
2
MethylationArray
2
WholeGenome
2
BiocViews
2
MathematicalBiology
2
GUI
2
CpGIsland
2
HiddenMarkovModel
2
TwoChannel
2
cancer
1
CRISPR
1
StatisticalMethod
1
TargetedResequencing
1
ExomeSeq
1
Survival
1
Pharmacogenomics
1
whole-genome-sequencing
1
rna-sequencing
1
rna-seq
1
r-language
1
SomaticMutation
1
PatternLogic
1
systems-biology
1
snps
1
network-analysis
1
gwas
1
bioinformatics
1
SNPsAndGeneticVariability
1
StructuralPrediction
1
Workflow
1
clonal
1
EpigeneticsWorkflow
1
cooccurrence
1
exclusivity
1
mutual
1
BiologicalQuestion
1
NetworkEnrichment
1
bayesian
1
biomedicalinformatics
1
clustering
1
functional-variants
1
functionalgenomics
1
functionalprediction
1
generegulation
1
genetics
1
geneticvariability
1
genomicvariation
1
snp
1
systemsbiology
1
transcription
1