bioconductor.org "GeneticVariability" keyword
Top 1.8% on bioconductor.org
9 versions - Latest release: 24 days ago - 14 dependent packages - 428 thousand downloads total - 2 maintainers
Rsubread 2.26.0
Mapping, quantification and variant analysis of sequencing data9 versions - Latest release: 24 days ago - 14 dependent packages - 428 thousand downloads total - 2 maintainers
trio 3.50.0
Testing of SNPs and SNP Interactions in Case-Parent Trio Studies7 versions - Latest release: about 15 hours ago - 34.8 thousand downloads total - 1 maintainer
Top 8.5% on bioconductor.org
7 versions - Latest release: 1 day ago - 2 dependent packages - 50.5 thousand downloads total - 1 maintainer
deepSNV 1.58.0
Detection of subclonal SNVs in deep sequencing data.7 versions - Latest release: 1 day ago - 2 dependent packages - 50.5 thousand downloads total - 1 maintainer
BUMHMM 1.36.0
Computational pipeline for computing probability of modification from structure probing experimen...7 versions - Latest release: 2 days ago - 18.6 thousand downloads total - 1 maintainer
scQTLtools 1.4.0
scQTLtools: an R/Bioconductor package for comprehensive identification and visualization of singl...7 versions - Latest release: 4 days ago - 3.38 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 2.1% on bioconductor.org
8 versions - Latest release: 5 days ago - 23 dependent packages - 1.12 million downloads total - 1 maintainer
phyloseq 1.56.0
Handling and analysis of high-throughput microbiome census data8 versions - Latest release: 5 days ago - 23 dependent packages - 1.12 million downloads total - 1 maintainer
microbiomeExplorer 1.22.0
Microbiome Exploration App7 versions - Latest release: 5 days ago - 15.2 thousand downloads total - 1 maintainer
Top 9.0% on bioconductor.org
7 versions - Latest release: 7 days ago - 36.4 thousand downloads total - 1 maintainer
RLMM 1.74.0
A Genotype Calling Algorithm for Affymetrix SNP Arrays7 versions - Latest release: 7 days ago - 36.4 thousand downloads total - 1 maintainer
ISoLDE 1.40.0
Integrative Statistics of alleLe Dependent Expression7 versions - Latest release: 8 days ago - 16 thousand downloads total - 1 maintainer
hapFabia 1.54.0
hapFabia: Identification of very short segments of identity by descent (IBD) characterized by rar...7 versions - Latest release: 9 days ago - 31.6 thousand downloads total - 1 maintainer
SIAMCAT 2.16.0
Statistical Inference of Associations between Microbial Communities And host phenoTypes7 versions - Latest release: 9 days ago - 23.3 thousand downloads total - 1 maintainer
gmoviz 1.24.0
Seamless visualization of complex genomic variations in GMOs and edited cell lines7 versions - Latest release: 10 days ago - 12.2 thousand downloads total - 1 maintainer
Clomial 1.48.0
Infers clonal composition of a tumor7 versions - Latest release: 10 days ago - 24.5 thousand downloads total - 1 maintainer
Top 7.5% on bioconductor.org
7 versions - Latest release: 11 days ago - 50 thousand downloads total - 1 maintainer
chopsticks 1.78.0
The 'snp.matrix' and 'X.snp.matrix' Classes7 versions - Latest release: 11 days ago - 50 thousand downloads total - 1 maintainer
Top 3.0% on bioconductor.org
8 versions - Latest release: 12 days ago - 11 dependent packages - 257 thousand downloads total - 71 stars on GitHub - 1 maintainer
metagenomeSeq 1.54.0
Statistical analysis for sparse high-throughput sequencing8 versions - Latest release: 12 days ago - 11 dependent packages - 257 thousand downloads total - 71 stars on GitHub - 1 maintainer
GBScleanR 2.6.0
Error correction tool for noisy genotyping by sequencing (GBS) data13 versions - Latest release: 12 days ago - 9.87 thousand downloads total - 4 stars on GitHub - 1 maintainer
epistasisGA 1.14.0
An R package to identify multi-snp effects in nuclear family studies using the GADGETS method7 versions - Latest release: 12 days ago - 8.17 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 5.2% on bioconductor.org
7 versions - Latest release: 13 days ago - 1 dependent package - 87.3 thousand downloads total - 40 stars on GitHub - 1 maintainer
GENESIS 2.42.0
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzi...7 versions - Latest release: 13 days ago - 1 dependent package - 87.3 thousand downloads total - 40 stars on GitHub - 1 maintainer
RAIDS 1.10.0
Robust Ancestry Inference using Data Synthesis6 versions - Latest release: 13 days ago - 6.39 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 4.6% on bioconductor.org
7 versions - Latest release: 14 days ago - 1 dependent package - 97.3 thousand downloads total - 3 stars on GitHub - 1 maintainer
SeqVarTools 1.50.0
Tools for variant data7 versions - Latest release: 14 days ago - 1 dependent package - 97.3 thousand downloads total - 3 stars on GitHub - 1 maintainer
martini 1.32.0
GWAS Incorporating Networks7 versions - Latest release: 14 days ago - 16.3 thousand downloads total - 4 stars on GitHub - 1 maintainer
microSTASIS 1.12.0
Microbiota STability ASsessment via Iterative cluStering7 versions - Latest release: 14 days ago - 6.07 thousand downloads total - 1 maintainer
VariantTools 1.54.0
Tools for Exploratory Analysis of Variant Calls7 versions - Latest release: 14 days ago - 2 dependent packages - 41.9 thousand downloads total - 1 maintainer
OMICsPCA 1.30.0
An R package for quantitative integration and analysis of multiple omics assays from heterogeneou...7 versions - Latest release: 15 days ago - 18.2 thousand downloads total - 1 maintainer
BBCAnalyzer 1.42.0
BBCAnalyzer: an R/Bioconductor package for visualizing base counts7 versions - Latest release: 16 days ago - 23.5 thousand downloads total - 1 maintainer
Top 2.7% on bioconductor.org
7 versions - Latest release: 16 days ago - 15 dependent packages - 505 thousand downloads total - 1 maintainer
snpStats 1.62.0
SnpMatrix and XSnpMatrix classes and methods7 versions - Latest release: 16 days ago - 15 dependent packages - 505 thousand downloads total - 1 maintainer
gwasurvivr 1.30.0
gwasurvivr: an R package for genome wide survival analysis7 versions - Latest release: 16 days ago - 18.7 thousand downloads total - 13 stars on GitHub - 1 maintainer
QSutils 1.30.0
Quasispecies Diversity7 versions - Latest release: 17 days ago - 29.4 thousand downloads total - 1 maintainer
Top 9.0% on bioconductor.org
8 versions - Latest release: 17 days ago - 3 dependent packages - 43 thousand downloads total - 1 maintainer
RTN 2.36.0
RTN: Reconstruction of Transcriptional regulatory Networks and analysis of regulons8 versions - Latest release: 17 days ago - 3 dependent packages - 43 thousand downloads total - 1 maintainer
Top 4.1% on bioconductor.org
7 versions - Latest release: 17 days ago - 4 dependent packages - 143 thousand downloads total - 18 stars on GitHub - 1 maintainer
GWASTools 1.58.0
Tools for Genome Wide Association Studies7 versions - Latest release: 17 days ago - 4 dependent packages - 143 thousand downloads total - 18 stars on GitHub - 1 maintainer
CrispRVariants 1.40.0
Tools for counting and visualising mutations in a target location7 versions - Latest release: 18 days ago - 28.2 thousand downloads total - 1 maintainer
TVTB 1.38.0
TVTB: The VCF Tool Box9 versions - Latest release: 21 days ago - 18.3 thousand downloads total - 2 stars on GitHub - 1 maintainer
MAGAR 1.20.0
MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation an...7 versions - Latest release: 25 days ago - 11.3 thousand downloads total - 0 stars on GitHub - 1 maintainer
RIVER 1.34.0
R package for RIVER (RNA-Informed Variant Effect on Regulation)6 versions - Latest release: 6 months ago - 17.3 thousand downloads total - 10 stars on GitHub - 1 maintainer
Top 3.3% on bioconductor.org
7 versions - Latest release: 6 months ago - 5 dependent packages - 188 thousand downloads total - 4 maintainers
missMethyl 1.44.0
Analysing Illumina HumanMethylation BeadChip Data7 versions - Latest release: 6 months ago - 5 dependent packages - 188 thousand downloads total - 4 maintainers
mutscan 1.0.0
Preprocessing and Analysis of Deep Mutational Scanning Data1 version - Latest release: 7 months ago - 1.53 thousand downloads total - 14 stars on GitHub - 1 maintainer
Top 4.6% on bioconductor.org
6 versions - Latest release: 6 months ago - 1 dependent package - 72.8 thousand downloads total - 3 stars on GitHub - 1 maintainer
qpgraph 2.44.0
Estimation of Genetic and Molecular Regulatory Networks from High-Throughput Genomics Data6 versions - Latest release: 6 months ago - 1 dependent package - 72.8 thousand downloads total - 3 stars on GitHub - 1 maintainer
GSReg 1.44.0
Gene Set Regulation (GS-Reg)6 versions - Latest release: 6 months ago - 22.8 thousand downloads total - 2 maintainers
FRGEpistasis 1.46.0
Epistasis Analysis for Quantitative Traits by Functional Regression Model6 versions - Latest release: 6 months ago - 22.7 thousand downloads total - 1 maintainer
omicsPrint 1.30.0
Cross omic genetic fingerprinting6 versions - Latest release: 6 months ago - 16 thousand downloads total - 1 maintainer
appreci8R 1.28.0
appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity an...7 versions - Latest release: 6 months ago - 15.2 thousand downloads total - 1 maintainer
trigger 1.53.0 removed
Transcriptional Regulatory Inference from Genetics of Gene ExpRession5 versions - Latest release: about 1 year ago - 27.7 thousand downloads total - 1 maintainer
GeneGeneInteR 1.33.0 removed
Tools for Testing Gene-Gene Interaction at the Gene Level5 versions - Latest release: about 1 year ago - 14.9 thousand downloads total - 1 maintainer
GeneAccord 1.18.0 removed
Detection of clonally exclusive gene or pathway pairs in a cohort of cancer patients1 version - Latest release: over 2 years ago - 4.41 thousand downloads total - 2 stars on GitHub - 1 maintainer
BiocOncoTK 1.26.0 removed
Bioconductor components for general cancer genomics5 versions - Latest release: over 1 year ago - 13.4 thousand downloads total - 1 maintainer
Top 9.5% on bioconductor.org
3 versions - Latest release: about 2 years ago - 38.5 thousand downloads total - 1 maintainer
beadarraySNP 1.70.0 removed
Normalization and reporting of Illumina SNP bead arrays3 versions - Latest release: about 2 years ago - 38.5 thousand downloads total - 1 maintainer
pathVar 1.34.0 removed
Methods to Find Pathways with Significantly Different Variability3 versions - Latest release: about 2 years ago - 9.98 thousand downloads total - 1 maintainer
Related Keywords
Software
47
Genetics
25
SNP
25
Sequencing
21
ImmunoOncology
13
GeneExpression
10
Clustering
10
MultipleComparison
9
Transcription
8
GenomicVariation
8
Visualization
8
Microarray
8
GeneRegulation
7
QualityControl
6
Preprocessing
6
Regression
6
Microbiome
5
GeneSetEnrichment
5
BiomedicalInformatics
5
DataImport
5
Classification
5
DNAMethylation
4
FunctionalGenomics
4
Normalization
4
GraphAndNetwork
4
GenomeWideAssociation
4
Metagenomics
4
Epigenetics
4
Pathways
4
FeatureExtraction
4
Coverage
4
Alignment
4
SequenceMatching
4
VariantDetection
4
PrincipalComponent
3
DimensionReduction
3
Network
3
DNASeq
3
DataRepresentation
3
RNASeq
3
SingleCell
3
VariantAnnotation
3
NetworkInference
3
Bayesian
3
SystemsBiology
3
DifferentialExpression
3
Transcriptomics
3
CopyNumberVariation
3
MethylationArray
2
DifferentialMethylation
2
TwoChannel
2
GUI
2
CpGIsland
2
r-package
2
genomics
2
WholeGenome
2
HiddenMarkovModel
2
BiocViews
2
rna-seq
2
snp
2
MathematicalBiology
2
biomedicalinformatics
1
bayesian
1
TranscriptomeVariant
1
mutual
1
FunctionalPrediction
1
mRNAMicroarray
1
clonal
1
cancer
1
AlternativeSplicing
1
MethylSeq
1
PatternLogic
1
SomaticMutation
1
clustering
1
functional-variants
1
variant
1
exclusivity
1
functionalgenomics
1
functionalprediction
1
transcriptomics
1
generegulation
1
genetics
1
transcriptomevariant
1
geneticvariability
1
genomicvariation
1
systemsbiology
1
transcription
1
cooccurrence
1
BatchEffect
1
exome-sequencing
1
cancer-genomics
1
ancestry
1
StatisticalMethod
1
SNPsAndGeneticVariability
1
TargetedResequencing
1
ExomeSeq
1
OneChannel
1
visualization
1
sc-eqtl
1
StructuralPrediction
1