bioconductor.org "GenomeWideAssociation" keyword
View the packages on the bioconductor.org package registry that are tagged with the "GenomeWideAssociation" keyword.
CCAFE 1.0.0
Case Control Allele Frequency Estimation1 version - Latest release: 3 months ago - 1.35 thousand downloads total - 1 stars on GitHub - 1 maintainer
SAIGEgds 2.8.0
Scalable Implementation of Generalized mixed models using GDS files in Phenome-Wide Association S...7 versions - Latest release: 2 months ago - 12.5 thousand downloads total - 7 stars on GitHub - 1 maintainer
nullranges 1.14.0
Generation of null ranges via bootstrapping or covariate matching5 versions - Latest release: 2 months ago - 1 dependent package - 11 thousand downloads total - 22 stars on GitHub - 1 maintainer
methodical 1.4.0
Discovering genomic regions where methylation is strongly associated with transcriptional activity4 versions - Latest release: 3 months ago - 3.3 thousand downloads total - 0 stars on GitHub - 1 maintainer
Qtlizer 1.22.0
Comprehensive QTL annotation of GWAS results6 versions - Latest release: 3 months ago - 10.5 thousand downloads total - 3 stars on GitHub - 1 maintainer
GeneGeneInteR 1.33.0
Tools for Testing Gene-Gene Interaction at the Gene Level5 versions - Latest release: 3 months ago - 14.5 thousand downloads total - 1 maintainer
MungeSumstats 1.16.0
Standardise summary statistics from GWAS7 versions - Latest release: 2 months ago - 41.6 thousand downloads total - 83 stars on GitHub - 1 maintainer
diffuStats 1.28.0
Diffusion scores on biological networks5 versions - Latest release: 3 months ago - 13.8 thousand downloads total - 1 maintainer
gwasurvivr 1.26.0
gwasurvivr: an R package for genome wide survival analysis5 versions - Latest release: 3 months ago - 14.4 thousand downloads total - 12 stars on GitHub - 1 maintainer
cageminer 1.14.0
Candidate Gene Miner5 versions - Latest release: 3 months ago - 6.48 thousand downloads total - 1 stars on GitHub - 1 maintainer
ggmanh 1.12.0
Visualization Tool for GWAS Result5 versions - Latest release: 3 months ago - 1 dependent package - 9.36 thousand downloads total - 1 maintainer
Top 5.2% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 66.5 thousand downloads total - 38 stars on GitHub - 1 maintainer
GENESIS 2.38.0
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzi...5 versions - Latest release: 3 months ago - 1 dependent package - 66.5 thousand downloads total - 38 stars on GitHub - 1 maintainer
GGPA 1.20.0
graph-GPA: A graphical model for prioritizing GWAS results and investigating pleiotropic architec...5 versions - Latest release: 3 months ago - 7.79 thousand downloads total - 1 stars on GitHub - 1 maintainer
gcatest 2.8.0
Genotype Conditional Association TEST5 versions - Latest release: 2 months ago - 15 thousand downloads total - 5 stars on GitHub - 1 maintainer
metaCCA 1.36.0
Summary Statistics-Based Multivariate Meta-Analysis of Genome-Wide Association Studies Using Cano...5 versions - Latest release: 3 months ago - 16.8 thousand downloads total - 1 maintainer
coMethDMR 1.12.0
Accurate identification of co-methylated and differentially methylated regions in epigenome-wide ...5 versions - Latest release: 3 months ago - 6.08 thousand downloads total - 7 stars on GitHub - 1 maintainer
rqt 1.34.0
rqt: utilities for gene-level meta-analysis5 versions - Latest release: 3 months ago - 11.8 thousand downloads total - 2 stars on GitHub - 1 maintainer
CNVRanger 1.24.2
Summarization and expression/phenotype association of CNV ranges7 versions - Latest release: about 2 months ago - 13 thousand downloads total - 4 stars on GitHub - 1 maintainer
RVS 1.30.0
Computes estimates of the probability of related individuals sharing a rare variant5 versions - Latest release: 3 months ago - 11.4 thousand downloads total - 1 maintainer
iCARE 1.36.0
Individualized Coherent Absolute Risk Estimation (iCARE)5 versions - Latest release: 3 months ago - 18.8 thousand downloads total - 1 maintainer
hierinf 1.26.0
Hierarchical Inference5 versions - Latest release: 3 months ago - 8.5 thousand downloads total - 1 maintainer
GEM 1.34.0
GEM: fast association study for the interplay of Gene, Environment and Methylation5 versions - Latest release: 3 months ago - 13.7 thousand downloads total - 1 maintainer
globalSeq 1.36.0
Global Test for Counts5 versions - Latest release: 3 months ago - 14.1 thousand downloads total - 1 stars on GitHub - 1 maintainer
BG2 1.8.0
Performs Bayesian GWAS analysis for non-Gaussian data using BG25 versions - Latest release: 3 months ago - 4.45 thousand downloads total - 1 maintainer
anota2seq 1.30.0
Generally applicable transcriptome-wide analysis of translational efficiency using anota2seq5 versions - Latest release: 3 months ago - 18 thousand downloads total - 2 maintainers
bacon 1.36.0
Controlling bias and inflation in association studies using the empirical null distribution5 versions - Latest release: 3 months ago - 24.8 thousand downloads total - 1 maintainer
geneAttribution 1.34.0
Identification of candidate genes associated with genetic variation5 versions - Latest release: 3 months ago - 14.3 thousand downloads total - 1 maintainer
GWAS.BAYES 1.18.0
Bayesian analysis of Gaussian GWAS data5 versions - Latest release: 3 months ago - 7.36 thousand downloads total - 1 maintainer
ASAFE 1.34.0
Ancestry Specific Allele Frequency Estimation5 versions - Latest release: 3 months ago - 15.1 thousand downloads total - 1 maintainer
ASSET 2.26.0
An R package for subset-based association analysis of heterogeneous traits and subtypes5 versions - Latest release: 3 months ago - 1 dependent package - 28.2 thousand downloads total - 1 maintainer
martini 1.28.0
GWAS Incorporating Networks5 versions - Latest release: 3 months ago - 11.9 thousand downloads total - 4 stars on GitHub - 1 maintainer
GPA 1.20.0
GPA (Genetic analysis incorporating Pleiotropy and Annotation)5 versions - Latest release: 3 months ago - 7.55 thousand downloads total - 15 stars on GitHub - 1 maintainer
PanViz 1.10.0
Integrating Multi-Omic Network Data With Summay-Level GWAS Data5 versions - Latest release: 3 months ago - 3.25 thousand downloads total - 3 stars on GitHub - 1 maintainer
pathwayPCA 1.24.0
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection5 versions - Latest release: 3 months ago - 1 dependent package - 11.6 thousand downloads total - 11 stars on GitHub - 1 maintainer
coMET 1.40.0
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methyl...6 versions - Latest release: 3 months ago - 23.5 thousand downloads total - 1 maintainer
Pi 2.18.0 removed
Leveraging Genetic Evidence to Prioritise Drug Targets at the Gene and Pathway Level4 versions - Latest release: 8 months ago - 19 thousand downloads total - 1 maintainer
InterMineR 1.26.0 removed
R Interface with InterMine-Powered Databases4 versions - Latest release: about 1 year ago - 12 thousand downloads total - 17 stars on GitHub - 1 maintainer
SISPA 1.32.0 removed
SISPA: Method for Sample Integrated Set Profile Analysis2 versions - Latest release: over 1 year ago - 13.4 thousand downloads total - 1 maintainer
Top 5.1% on bioconductor.org
2 versions - Latest release: over 1 year ago - 56.5 thousand downloads total - 1 maintainer
GISPA 1.26.0 removed
GISPA: Method for Gene Integrated Set Profile Analysis2 versions - Latest release: over 1 year ago - 56.5 thousand downloads total - 1 maintainer
REMP 1.28.0
Repetitive Element Methylation Prediction3 versions - Latest release: about 1 year ago - 12.8 thousand downloads total - 2 stars on GitHub - 1 maintainer
Related Keywords
Software
40
SNP
23
Genetics
18
GeneExpression
11
StatisticalMethod
10
Regression
9
MultipleComparison
7
DNAMethylation
6
MethylationArray
6
RNASeq
6
DifferentialExpression
6
Preprocessing
5
Network
5
GeneSetEnrichment
5
FunctionalGenomics
5
Sequencing
5
Microarray
5
Epigenetics
4
GraphAndNetwork
4
GeneticVariability
4
LinkageDisequilibrium
4
PrincipalComponent
4
DimensionReduction
4
gwas
4
Visualization
4
GenomicVariation
4
WholeGenome
4
genomics
4
Transcriptomics
4
Metabolomics
3
Proteomics
3
Survival
3
Classification
3
Clustering
3
DifferentialMethylation
3
ExomeSeq
3
ImmunoOncology
3
Bayesian
3
Pathways
3
ComparativeGenomics
3
GeneTarget
3
GeneRegulation
3
SystemsBiology
2
FunctionalPrediction
2
VariantAnnotation
2
QualityControl
2
GenomeAnnotation
2
Reactome
2
ChIPSeq
2
KEGG
2
CopyNumberVariation
2
FeatureExtraction
2
MethylSeq
2
GenePrediction
2
BatchEffect
2
AssayDomain
2
bioinformatics
2
BiomedicalInformatics
2
r
2
r-package
2
Normalization
2
Transcription
2
bioconductor-package
2
database-api
1
TwoChannel
1
MultiChannel
1
ExperimentalDesign
1
network-analysis
1
snps
1
systems-biology
1
DataImport
1
intermine
1
biology
1
GO
1
AlternativeSplicing
1
CellBiology
1
GeneSignaling
1
Lipidomics
1
HiC
1
RiboSeq
1
MotifAnnotation
1
DNASeq
1
qtl
1
standardisation
1
summary-statistics
1
vcf-files
1
variant-annotation
1
eqtl
1
statistics
1
matching
1
Pharmacogenomics
1
bootstrap
1
bioconductor
1
NetworkEnrichment
1
BiocViews
1
HistoneModification
1
HiddenMarkovModel
1
DNaseSeq
1
Annotation
1
ATACSeq
1