Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "GenomeWideAssociation" keyword
MungeSumstats 1.12.0
Standardise summary statistics from GWAS4 versions - Latest release: about 1 month ago - 24.4 thousand downloads total - 64 stars on GitHub - 1 maintainer
methodical 1.0.0
Discovering genomic regions where methylation is strongly associated with transcriptional activity1 version - Latest release: about 1 month ago - 346 downloads total - 0 stars on GitHub - 1 maintainer
SAIGEgds 2.2.1
Scalable Implementation of Generalized mixed models using GDS files in Phenome-Wide Association S...4 versions - Latest release: 3 months ago - 7.65 thousand downloads total - 7 stars on GitHub - 1 maintainer
Qtlizer 1.16.0
Comprehensive QTL annotation of GWAS results3 versions - Latest release: 6 months ago - 6.6 thousand downloads total - 3 stars on GitHub - 1 maintainer
pathwayPCA 1.18.0
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection3 versions - Latest release: 6 months ago - 1 dependent package - 7.56 thousand downloads total - 11 stars on GitHub - 1 maintainer
REMP 1.26.0
Repetitive Element Methylation Prediction3 versions - Latest release: 6 months ago - 11.1 thousand downloads total - 2 stars on GitHub - 1 maintainer
gwasurvivr 1.20.0
gwasurvivr: an R package for genome wide survival analysis3 versions - Latest release: 6 months ago - 9.71 thousand downloads total - 9 stars on GitHub - 1 maintainer
GeneGeneInteR 1.28.0
Tools for Testing Gene-Gene Interaction at the Gene Level3 versions - Latest release: 7 months ago - 10.7 thousand downloads total - 1 maintainer
bacon 1.30.0
Controlling bias and inflation in association studies using the empirical null distribution3 versions - Latest release: 7 months ago - 16.9 thousand downloads total - 1 maintainer
GGPA 1.14.0
graph-GPA: A graphical model for prioritizing GWAS results and investigating pleiotropic architec...3 versions - Latest release: 7 months ago - 4.23 thousand downloads total - 1 stars on GitHub - 1 maintainer
anota2seq 1.24.0
Generally applicable transcriptome-wide analysis of translational efficiency using anota2seq3 versions - Latest release: 7 months ago - 11.1 thousand downloads total - 2 maintainers
PanViz 1.4.0
Integrating Multi-Omic Network Data With Summay-Level GWAS Data3 versions - Latest release: 7 months ago - 1.66 thousand downloads total - 3 stars on GitHub - 1 maintainer
nullranges 1.8.0
Generation of null ranges via bootstrapping or covariate matching3 versions - Latest release: 7 months ago - 1 dependent package - 4.44 thousand downloads total - 22 stars on GitHub - 1 maintainer
hierinf 1.20.0
Hierarchical Inference3 versions - Latest release: 7 months ago - 5.33 thousand downloads total - 1 maintainer
GPA 1.14.0
GPA (Genetic analysis incorporating Pleiotropy and Annotation)3 versions - Latest release: 7 months ago - 4.2 thousand downloads total - 8 stars on GitHub - 1 maintainer
diffuStats 1.22.0
Diffusion scores on biological networks3 versions - Latest release: 7 months ago - 9.33 thousand downloads total - 1 maintainer
geneAttribution 1.28.0
Identification of candidate genes associated with genetic variation3 versions - Latest release: 7 months ago - 10 thousand downloads total - 1 maintainer
RVS 1.24.0
Computes estimates of the probability of related individuals sharing a rare variant3 versions - Latest release: 7 months ago - 7.86 thousand downloads total - 1 maintainer
ASSET 2.20.0
An R package for subset-based association analysis of heterogeneous traits and subtypes3 versions - Latest release: 7 months ago - 1 dependent package - 22 thousand downloads total - 1 maintainer
ASAFE 1.28.0
Ancestry Specific Allele Frequency Estimation3 versions - Latest release: 7 months ago - 10.3 thousand downloads total - 1 maintainer
SISPA 1.32.0 removed
SISPA: Method for Sample Integrated Set Profile Analysis2 versions - Latest release: 7 months ago - 13.4 thousand downloads total - 1 maintainer
iCARE 1.30.0
A Tool for Individualized Coherent Absolute Risk Estimation (iCARE)3 versions - Latest release: 7 months ago - 13.9 thousand downloads total - 1 maintainer
GEM 1.28.0
GEM: fast association study for the interplay of Gene, Environment and Methylation3 versions - Latest release: 7 months ago - 10 thousand downloads total - 1 maintainer
globalSeq 1.30.0
Global Test for Counts3 versions - Latest release: 7 months ago - 10.4 thousand downloads total - 1 stars on GitHub - 1 maintainer
Pi 2.14.0
Leveraging Genetic Evidence to Prioritise Drug Targets at the Gene and Pathway Level3 versions - Latest release: 7 months ago - 17.9 thousand downloads total - 1 maintainer
BG2 1.2.0
Performs Bayesian GWAS analysis for non-Gaussian data using BG23 versions - Latest release: 7 months ago - 1.3 thousand downloads total - 1 maintainer
ggmanh 1.6.0
Visualization Tool for GWAS Result3 versions - Latest release: 7 months ago - 1 dependent package - 3.27 thousand downloads total - 1 maintainer
GWAS.BAYES 1.12.0
Bayesian analysis of Gaussian GWAS data3 versions - Latest release: 7 months ago - 3.6 thousand downloads total - 1 maintainer
metaCCA 1.30.0
Summary Statistics-Based Multivariate Meta-Analysis of Genome-Wide Association Studies Using Cano...3 versions - Latest release: 7 months ago - 13.2 thousand downloads total - 1 maintainer
CNVRanger 1.18.1
Summarization and expression/phenotype association of CNV ranges4 versions - Latest release: 3 months ago - 8.7 thousand downloads total - 4 stars on GitHub - 1 maintainer
coMET 1.34.0
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methyl...3 versions - Latest release: 7 months ago - 21.1 thousand downloads total - 1 maintainer
rqt 1.28.0
rqt: utilities for gene-level meta-analysis3 versions - Latest release: 7 months ago - 8.75 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 5.2% on bioconductor.org
3 versions - Latest release: 21 days ago - 1 dependent package - 55.1 thousand downloads total - 32 stars on GitHub - 1 maintainer
GENESIS 2.34.0
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzi...3 versions - Latest release: 21 days ago - 1 dependent package - 55.1 thousand downloads total - 32 stars on GitHub - 1 maintainer
InterMineR 1.26.0
R Interface with InterMine-Powered Databases4 versions - Latest release: 23 days ago - 10.4 thousand downloads total - 17 stars on GitHub - 1 maintainer
Top 5.1% on bioconductor.org
2 versions - Latest release: 7 months ago - 56.5 thousand downloads total - 1 maintainer
GISPA 1.26.0 removed
GISPA: Method for Gene Integrated Set Profile Analysis2 versions - Latest release: 7 months ago - 56.5 thousand downloads total - 1 maintainer
martini 1.24.0
GWAS Incorporating Networks3 versions - Latest release: 25 days ago - 7.58 thousand downloads total - 4 stars on GitHub - 1 maintainer
coMethDMR 1.8.0
Accurate identification of co-methylated and differentially methylated regions in epigenome-wide ...3 versions - Latest release: 25 days ago - 2.21 thousand downloads total - 7 stars on GitHub - 1 maintainer
cageminer 1.10.0
Candidate Gene Miner3 versions - Latest release: 25 days ago - 2.64 thousand downloads total - 1 stars on GitHub - 1 maintainer
gcatest 2.4.0
Genotype Conditional Association TEST3 versions - Latest release: 28 days ago - 10.7 thousand downloads total - 5 stars on GitHub - 1 maintainer
Related Keywords
Software
39
SNP
22
Genetics
17
GeneExpression
11
StatisticalMethod
10
Regression
9
MultipleComparison
7
MethylationArray
6
DNAMethylation
6
DifferentialExpression
6
RNASeq
6
Network
5
Sequencing
5
GeneSetEnrichment
5
Microarray
5
FunctionalGenomics
5
LinkageDisequilibrium
4
DimensionReduction
4
Epigenetics
4
GeneticVariability
4
GraphAndNetwork
4
PrincipalComponent
4
gwas
4
genomics
4
Visualization
4
Transcriptomics
4
Preprocessing
4
GenomicVariation
4
Pathways
3
Metabolomics
3
GeneTarget
3
Proteomics
3
Survival
3
DifferentialMethylation
3
Classification
3
WholeGenome
3
Bayesian
3
ImmunoOncology
3
Clustering
3
ExomeSeq
3
GeneRegulation
3
VariantAnnotation
2
GenomeAnnotation
2
ChIPSeq
2
MethylSeq
2
Reactome
2
KEGG
2
Normalization
2
QualityControl
2
BiomedicalInformatics
2
BatchEffect
2
ComparativeGenomics
2
bioconductor-package
2
bioinformatics
2
r
2
r-package
2
Transcription
2
FunctionalPrediction
2
CopyNumberVariation
2
FeatureExtraction
2
AssayDomain
2
SystemsBiology
2
GenePrediction
2
database-api
1
statistics
1
HiC
1
VariantDetection
1
NetworkEnrichment
1
ExperimentalDesign
1
systems-biology
1
GUI
1
DNASeq
1
MotifAnnotation
1
snps
1
network-analysis
1
intermine
1
miRNA
1
biology
1
GO
1
AlternativeSplicing
1
BiocViews
1
RiboSeq
1
ExonArray
1
qtl
1
standardisation
1
summary-statistics
1
vcf-files
1
gds
1
mixed-model
1
phewas
1
eqtl
1
variant-annotation
1
CellBiology
1
GeneSignaling
1
Lipidomics
1
DataImport
1
MultiChannel
1
TwoChannel
1
Pharmacogenomics
1
ATACSeq
1