Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "HiddenMarkovModel" keyword
AneuFinder 1.30.0
Analysis of Copy Number Variation in Single-Cell-Sequencing Data3 versions - Latest release: 6 months ago - 17.5 thousand downloads total - 15 stars on GitHub - 1 maintainer
Top 4.7% on bioconductor.org
4 versions - Latest release: 6 months ago - 80.3 thousand downloads total - 502 stars on GitHub - 1 maintainer
infercnv 1.18.1
Infer Copy Number Variation from Single-Cell RNA-Seq Data4 versions - Latest release: 6 months ago - 80.3 thousand downloads total - 502 stars on GitHub - 1 maintainer
GBScleanR 1.8.0
Error correction tool for noisy genotyping by sequencing (GBS) data3 versions - Latest release: 22 days ago - 2.17 thousand downloads total - 0 stars on GitHub - 1 maintainer
epigraHMM 1.10.0
Epigenomic R-based analysis with hidden Markov models3 versions - Latest release: 6 months ago - 3.3 thousand downloads total - 1 maintainer
nullranges 1.8.0
Generation of null ranges via bootstrapping or covariate matching3 versions - Latest release: 6 months ago - 1 dependent package - 4.44 thousand downloads total - 22 stars on GitHub - 1 maintainer
Top 7.1% on bioconductor.org
3 versions - Latest release: 6 months ago - 22.4 thousand downloads total - 87 stars on GitHub - 1 maintainer
TitanCNA 1.40.0
Subclonal copy number and LOH prediction from whole genome sequencing of tumours3 versions - Latest release: 6 months ago - 22.4 thousand downloads total - 87 stars on GitHub - 1 maintainer
iCNV 1.22.0
Integrated Copy Number Variation detection3 versions - Latest release: 6 months ago - 7.74 thousand downloads total - 1 maintainer
hummingbird 1.12.0
Bayesian Hidden Markov Model for the detection of differentially methylated regions3 versions - Latest release: 6 months ago - 3.39 thousand downloads total - 1 maintainer
methimpute 1.24.0
Imputation-guided re-construction of complete methylomes from WGBS data3 versions - Latest release: 6 months ago - 8.86 thousand downloads total - 1 maintainer
frenchFISH 1.14.0
Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections3 versions - Latest release: 6 months ago - 3.9 thousand downloads total - 1 maintainer
BUMHMM 1.26.0
Computational pipeline for computing probability of modification from structure probing experimen...3 versions - Latest release: 6 months ago - 9.56 thousand downloads total - 1 maintainer
EBSeqHMM 1.35.0
Bayesian analysis for identifying gene or isoform expression changes in ordered RNA-seq experiments3 versions - Latest release: 6 months ago - 17.4 thousand downloads total - 1 maintainer
NuPoP 2.10.0
An R package for nucleosome positioning prediction3 versions - Latest release: 6 months ago - 1 dependent package - 24.1 thousand downloads total
betaHMM 1.0.0
A Hidden Markov Model Approach for Identifying Differentially Methylated Sites and Regions for Be...1 version - Latest release: 23 days ago - 175 downloads total - 1 maintainer
UPDhmm 1.0.0
Detecting Uniparental Disomy through NGS trio data1 version - Latest release: 23 days ago - 0 stars on GitHub - 1 maintainer
planttfhunter 1.2.0
Identification and classification of plant transcription factors2 versions - Latest release: 7 months ago - 949 downloads total - 0 stars on GitHub - 1 maintainer
chromstaR 1.28.0
Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data2 versions - Latest release: 6 months ago - 13.6 thousand downloads total - 7 stars on GitHub - 1 maintainer
partCNV 1.0.0
Infer locally aneuploid cells using single cell RNA-seq data1 version - Latest release: 7 months ago - 659 downloads total - 1 maintainer
DMCHMM 1.24.0
Differentially Methylated CpG using Hidden Markov Model2 versions - Latest release: 6 months ago - 8.33 thousand downloads total - 0 stars on GitHub - 1 maintainer
STAN 2.28.0 removed
The Genomic STate ANnotation Package1 version - Latest release: 8 months ago - 14.8 thousand downloads total - 1 maintainer
Related Keywords
Software
20
Sequencing
12
ImmunoOncology
9
Genetics
7
CopyNumberVariation
5
RNASeq
4
ChIPSeq
4
Coverage
4
Classification
4
Bayesian
4
GenomicVariation
3
GenomeAnnotation
3
BiomedicalInformatics
3
DNAMethylation
3
Epigenetics
3
DifferentialMethylation
3
SingleCell
3
ATACSeq
3
GeneExpression
3
WholeGenome
3
Transcription
3
MultipleComparison
3
StatisticalMethod
3
DifferentialExpression
2
ExomeSeq
2
Visualization
2
Microarray
2
Transcriptomics
2
GeneticVariability
2
SNP
2
DNaseSeq
2
FunctionalGenomics
2
GeneRegulation
2
HistoneModification
2
GeneTarget
2
matching
1
VariantDetection
1
TimeCourse
1
NucleosomePositioning
1
MethylationArray
1
StructuralVariation
1
Spatial
1
FunctionalPrediction
1
functional-genomics
1
gene-families
1
hidden-markov-models
1
plant-genomics
1
plants
1
protein-domains
1
rstats
1
transcription-factors
1
DifferentialPeakCalling
1
PeakDetection
1
ChipOnChip
1
statistics
1
DNASeq
1
GeneSetEnrichment
1
10x-genomics
1
copy-number-variation
1
genome-sequencing
1
hmm
1
tumor-heterogeneity
1
genomics
1
bootstrap
1
Annotation
1
bioconductor
1
QualityControl
1
CellBiology
1
Preprocessing
1
GenomeWideAssociation
1
FeatureExtraction
1
Regression
1
StructuralPrediction
1