bioconductor.org "HiddenMarkovModel" keyword
View the packages on the bioconductor.org package registry that are tagged with the "HiddenMarkovModel" keyword.
UPDhmm 1.4.0
Detecting Uniparental Disomy through NGS trio data3 versions - Latest release: 3 months ago - 3.13 thousand downloads total - 1 stars on GitHub - 1 maintainer
epigraHMM 1.16.0
Epigenomic R-based analysis with hidden Markov models5 versions - Latest release: 3 months ago - 7.21 thousand downloads total - 1 maintainer
partCNV 1.6.0
Infer locally aneuploid cells using single cell RNA-seq data4 versions - Latest release: 3 months ago - 4.15 thousand downloads total - 1 maintainer
BUMHMM 1.32.0
Computational pipeline for computing probability of modification from structure probing experimen...5 versions - Latest release: 3 months ago - 14.4 thousand downloads total - 1 maintainer
NuPoP 2.16.0
An R package for nucleosome positioning prediction5 versions - Latest release: 3 months ago - 1 dependent package - 29.3 thousand downloads total
iCNV 1.28.0
Integrated Copy Number Variation detection5 versions - Latest release: 3 months ago - 12.4 thousand downloads total - 1 maintainer
chromstaR 1.34.0
Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data5 versions - Latest release: 3 months ago - 19.3 thousand downloads total - 8 stars on GitHub - 1 maintainer
GBScleanR 2.2.0
Error correction tool for noisy genotyping by sequencing (GBS) data9 versions - Latest release: 3 months ago - 6.9 thousand downloads total - 4 stars on GitHub - 1 maintainer
nullranges 1.14.0
Generation of null ranges via bootstrapping or covariate matching5 versions - Latest release: 3 months ago - 1 dependent package - 11 thousand downloads total - 22 stars on GitHub - 1 maintainer
DMCHMM 1.30.1
Differentially Methylated CpG using Hidden Markov Model5 versions - Latest release: 3 months ago - 12.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 7.1% on bioconductor.org
5 versions - Latest release: 3 months ago - 27 thousand downloads total - 87 stars on GitHub - 1 maintainer
TitanCNA 1.45.0
Subclonal copy number and LOH prediction from whole genome sequencing of tumours5 versions - Latest release: 3 months ago - 27 thousand downloads total - 87 stars on GitHub - 1 maintainer
betaHMM 1.4.1
A Hidden Markov Model Approach for Identifying Differentially Methylated Sites and Regions for Be...4 versions - Latest release: 2 months ago - 3.39 thousand downloads total - 1 maintainer
planttfhunter 1.8.0
Identification and classification of plant transcription factors5 versions - Latest release: 2 months ago - 4.67 thousand downloads total - 1 stars on GitHub - 1 maintainer
AneuFinder 1.35.0
Analysis of Copy Number Variation in Single-Cell-Sequencing Data5 versions - Latest release: 3 months ago - 35.4 thousand downloads total - 18 stars on GitHub - 1 maintainer
methimpute 1.30.0
Imputation-guided re-construction of complete methylomes from WGBS data5 versions - Latest release: 3 months ago - 13.5 thousand downloads total - 1 maintainer
Top 4.7% on bioconductor.org
6 versions - Latest release: 3 months ago - 117 thousand downloads total - 615 stars on GitHub - 1 maintainer
infercnv 1.24.0
Infer Copy Number Variation from Single-Cell RNA-Seq Data6 versions - Latest release: 3 months ago - 117 thousand downloads total - 615 stars on GitHub - 1 maintainer
frenchFISH 1.20.0
Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections5 versions - Latest release: 3 months ago - 6.99 thousand downloads total - 1 maintainer
EBSeqHMM 1.38.0 removed
Bayesian analysis for identifying gene or isoform expression changes in ordered RNA-seq experiments3 versions - Latest release: about 1 year ago - 17.8 thousand downloads total - 1 maintainer
STAN 2.28.0 removed
The Genomic STate ANnotation Package1 version - Latest release: almost 2 years ago - 14.8 thousand downloads total - 1 maintainer
hummingbird 1.14.0
Bayesian Hidden Markov Model for the detection of differentially methylated regions3 versions - Latest release: about 1 year ago - 4.86 thousand downloads total - 1 maintainer
Related Keywords
Software
20
Sequencing
12
ImmunoOncology
9
Genetics
7
CopyNumberVariation
5
ChIPSeq
4
Classification
4
Bayesian
4
Coverage
4
RNASeq
4
BiomedicalInformatics
3
StatisticalMethod
3
GenomicVariation
3
DifferentialMethylation
3
GenomeAnnotation
3
MultipleComparison
3
WholeGenome
3
DNAMethylation
3
Transcription
3
ATACSeq
3
Epigenetics
3
SingleCell
3
GeneExpression
3
DNaseSeq
2
Microarray
2
GeneTarget
2
FunctionalGenomics
2
GeneRegulation
2
HistoneModification
2
Transcriptomics
2
GeneticVariability
2
SNP
2
ExomeSeq
2
DifferentialExpression
2
Visualization
2
ChipOnChip
1
TimeCourse
1
MethylationArray
1
Spatial
1
FunctionalPrediction
1
functional-genomics
1
gene-families
1
hidden-markov-models
1
plant-genomics
1
plants
1
protein-domains
1
rstats
1
transcription-factors
1
StructuralVariation
1
VariantDetection
1
CellBiology
1
Preprocessing
1
StructuralPrediction
1
Regression
1
NucleosomePositioning
1
DifferentialPeakCalling
1
PeakDetection
1
QualityControl
1
Annotation
1
GeneSetEnrichment
1
GenomeWideAssociation
1
bioconductor
1
bootstrap
1
genomics
1
matching
1
statistics
1
FeatureExtraction
1
DNASeq
1
10x-genomics
1
copy-number-variation
1
genome-sequencing
1
hmm
1
tumor-heterogeneity
1