Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "MethylationArray" keyword
Top 1.9% on bioconductor.org
3 versions - Latest release: about 1 month ago - 31 dependent packages - 789 thousand downloads total - 58 stars on GitHub - 1 maintainer
minfi 1.50.0
Analyze Illumina Infinium DNA methylation arrays3 versions - Latest release: about 1 month ago - 31 dependent packages - 789 thousand downloads total - 58 stars on GitHub - 1 maintainer
betaHMM 1.0.0
A Hidden Markov Model Approach for Identifying Differentially Methylated Sites and Regions for Be...1 version - Latest release: about 1 month ago - 378 downloads total - 1 maintainer
knowYourCG 1.0.0
Functional analysis of DNA methylome datasets1 version - Latest release: about 1 month ago - 299 downloads total - 2 stars on GitHub - 1 maintainer
methyLImp2 1.0.0
Missing value estimation of DNA methylation data1 version - Latest release: about 1 month ago - 356 downloads total - 4 stars on GitHub - 1 maintainer
Moonlight2R 1.2.0
Identify oncogenes and tumor suppressor genes from omics data2 versions - Latest release: about 1 month ago - 1.13 thousand downloads total - 4 stars on GitHub - 1 maintainer
methodical 1.0.0
Discovering genomic regions where methylation is strongly associated with transcriptional activity1 version - Latest release: about 1 month ago - 346 downloads total - 0 stars on GitHub - 1 maintainer
Top 10.0% on bioconductor.org
3 versions - Latest release: 7 months ago - 2 dependent packages - 26.7 thousand downloads total - 39 stars on GitHub - 1 maintainer
EpiDISH 2.18.0
Epigenetic Dissection of Intra-Sample-Heterogeneity3 versions - Latest release: 7 months ago - 2 dependent packages - 26.7 thousand downloads total - 39 stars on GitHub - 1 maintainer
MEAT 1.14.0
Muscle Epigenetic Age Test3 versions - Latest release: 6 months ago - 4.53 thousand downloads total - 0 stars on GitHub - 1 maintainer
shinyMethyl 1.38.0
Interactive visualization for Illumina methylation arrays3 versions - Latest release: 6 months ago - 24.2 thousand downloads total - 3 stars on GitHub - 1 maintainer
methylCC 1.16.0
Estimate the cell composition of whole blood in DNA methylation samples3 versions - Latest release: 6 months ago - 6.38 thousand downloads total - 20 stars on GitHub - 1 maintainer
REMP 1.26.0
Repetitive Element Methylation Prediction3 versions - Latest release: 6 months ago - 11.1 thousand downloads total - 2 stars on GitHub - 1 maintainer
MAGAR 1.10.0
MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation an...3 versions - Latest release: 7 months ago - 4.57 thousand downloads total - 0 stars on GitHub - 1 maintainer
EnMCB 1.14.0
Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models3 versions - Latest release: 6 months ago - 5.1 thousand downloads total - 9 stars on GitHub - 1 maintainer
Top 5.6% on bioconductor.org
3 versions - Latest release: 22 days ago - 4 dependent packages - 50.3 thousand downloads total - 48 stars on GitHub - 1 maintainer
sesame 1.22.0
SEnsible Step-wise Analysis of DNA MEthylation BeadChips3 versions - Latest release: 22 days ago - 4 dependent packages - 50.3 thousand downloads total - 48 stars on GitHub - 1 maintainer
bacon 1.30.0
Controlling bias and inflation in association studies using the empirical null distribution3 versions - Latest release: 7 months ago - 16.9 thousand downloads total - 1 maintainer
MethylAid 1.36.0
Visual and interactive quality control of large Illumina DNA Methylation array data sets3 versions - Latest release: 7 months ago - 18.5 thousand downloads total - 1 maintainer
TOAST 1.16.0
Tools for the analysis of heterogeneous tissues3 versions - Latest release: 7 months ago - 3 dependent packages - 15.7 thousand downloads total - 8 stars on GitHub - 1 maintainer
conumee 1.36.0
Enhanced copy-number variation analysis using Illumina DNA methylation arrays3 versions - Latest release: 7 months ago - 23.8 thousand downloads total - 1 maintainer
bigmelon 1.28.0
Illumina methylation array analysis for large experiments3 versions - Latest release: 7 months ago - 12.3 thousand downloads total - 1 maintainer
AMARETTO 1.18.0
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis an...3 versions - Latest release: 7 months ago - 7.55 thousand downloads total - 1 maintainer
MethylMix 2.32.0
MethylMix: Identifying methylation driven cancer genes3 versions - Latest release: 7 months ago - 22.2 thousand downloads total - 1 maintainer
planet 1.10.0
Placental DNA methylation analysis tools3 versions - Latest release: 7 months ago - 1 dependent package - 5.94 thousand downloads total - 1 maintainer
recountmethylation 1.12.0
Access and analyze public DNA methylation array data compilations3 versions - Latest release: 7 months ago - 4.05 thousand downloads total - 8 stars on GitHub - 1 maintainer
GEM 1.28.0
GEM: fast association study for the interplay of Gene, Environment and Methylation3 versions - Latest release: 7 months ago - 10 thousand downloads total - 1 maintainer
normalize450K 1.30.0
Preprocessing of Illumina Infinium 450K data3 versions - Latest release: 7 months ago - 9.45 thousand downloads total - 1 maintainer
MBAmethyl 1.36.0
Model-based analysis of DNA methylation data3 versions - Latest release: 7 months ago - 12.5 thousand downloads total - 1 maintainer
TDbasedUFE 1.2.0
Tensor Decomposition Based Unsupervised Feature Extraction3 versions - Latest release: 7 months ago - 1 dependent package - 1.75 thousand downloads total - 5 stars on GitHub - 1 maintainer
TDbasedUFEadv 1.2.0
Advanced package of tensor decomposition based unsupervised feature extraction3 versions - Latest release: 7 months ago - 1.55 thousand downloads total - 0 stars on GitHub - 1 maintainer
mCSEA 1.22.0
Methylated CpGs Set Enrichment Analysis3 versions - Latest release: 7 months ago - 1 dependent package - 9.56 thousand downloads total - 1 maintainer
ENmix 1.38.01
Quality control and analysis tools for Illumina DNA methylation BeadChip3 versions - Latest release: 7 months ago - 27.6 thousand downloads total - 1 maintainer
GeoTcgaData 2.2.0
Processing Various Types of Data on GEO and TCGA3 versions - Latest release: 7 months ago - 1.61 thousand downloads total - 21 stars on GitHub - 1 maintainer
ramr 1.10.0
Detection of Rare Aberrantly Methylated Regions in Array and NGS Data3 versions - Latest release: 7 months ago - 3.04 thousand downloads total - 0 stars on GitHub - 1 maintainer
COCOA 2.16.0
Coordinate Covariation Analysis3 versions - Latest release: 7 months ago - 7.09 thousand downloads total - 1 maintainer
TurboNorm 1.50.0
A fast scatterplot smoother suitable for microarray normalization3 versions - Latest release: 7 months ago - 23 thousand downloads total - 1 maintainer
coMET 1.34.0
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methyl...3 versions - Latest release: 7 months ago - 21.1 thousand downloads total - 1 maintainer
MoonlightR 1.30.0
Identify oncogenes and tumor suppressor genes from omics data3 versions - Latest release: about 1 month ago - 11.7 thousand downloads total - 17 stars on GitHub - 1 maintainer
Top 2.7% on bioconductor.org
4 versions - Latest release: 24 days ago - 7 dependent packages - 364 thousand downloads total - 274 stars on GitHub - 2 maintainers
TCGAbiolinks 2.32.0
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data4 versions - Latest release: 24 days ago - 7 dependent packages - 364 thousand downloads total - 274 stars on GitHub - 2 maintainers
MethReg 1.14.0
Assessing the regulatory potential of DNA methylation regions or sites on gene transcription3 versions - Latest release: 22 days ago - 4.34 thousand downloads total - 4 stars on GitHub - 1 maintainer
regionalpcs 1.2.0
Summarizing Regional Methylation with Regional Principal Components Analysis2 versions - Latest release: 24 days ago - 801 downloads total - 0 stars on GitHub - 1 maintainer
Top 4.7% on bioconductor.org
3 versions - Latest release: 24 days ago - 1 dependent package - 54.4 thousand downloads total - 1 maintainer
RnBeads 2.22.0
RnBeads3 versions - Latest release: 24 days ago - 1 dependent package - 54.4 thousand downloads total - 1 maintainer
Top 3.3% on bioconductor.org
4 versions - Latest release: 24 days ago - 2 dependent packages - 135 thousand downloads total - 1 maintainer
DMRcate 3.0.0
Methylation array and sequencing spatial analysis methods4 versions - Latest release: 24 days ago - 2 dependent packages - 135 thousand downloads total - 1 maintainer
Top 4.3% on bioconductor.org
3 versions - Latest release: 25 days ago - 1 dependent package - 117 thousand downloads total - 1 maintainer
ChAMP 2.34.0
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC3 versions - Latest release: 25 days ago - 1 dependent package - 117 thousand downloads total - 1 maintainer
Top 3.3% on bioconductor.org
3 versions - Latest release: 25 days ago - 5 dependent packages - 122 thousand downloads total - 3 maintainers
missMethyl 1.38.0
Analysing Illumina HumanMethylation BeadChip Data3 versions - Latest release: 25 days ago - 5 dependent packages - 122 thousand downloads total - 3 maintainers
mitch 1.16.0
Multi-Contrast Gene Set Enrichment Analysis3 versions - Latest release: about 1 month ago - 5.04 thousand downloads total - 14 stars on GitHub - 1 maintainer
coMethDMR 1.8.0
Accurate identification of co-methylated and differentially methylated regions in epigenome-wide ...3 versions - Latest release: 25 days ago - 2.21 thousand downloads total - 7 stars on GitHub - 1 maintainer
Related Keywords
Software
45
DNAMethylation
40
Microarray
23
DifferentialMethylation
22
Epigenetics
18
TwoChannel
14
Preprocessing
14
GeneExpression
13
QualityControl
12
Normalization
10
Sequencing
10
ImmunoOncology
9
DifferentialExpression
9
DataImport
8
MethylSeq
7
Regression
7
Network
6
GeneRegulation
6
GenomeWideAssociation
6
BatchEffect
6
MultipleComparison
5
CpGIsland
5
GeneSetEnrichment
5
CopyNumberVariation
4
Pathways
4
RNASeq
4
StatisticalMethod
4
OneChannel
4
GenomeAnnotation
3
dna-methylation
3
bioinformatics
3
SNP
3
GeneTarget
3
Genetics
3
MultiChannel
3
Transcription
3
Survival
3
SingleCell
3
tensor-decomposition
2
GenomicVariation
2
r
2
Visualization
2
GUI
2
TimeCourse
2
Transcriptomics
2
BiomedicalInformatics
2
FeatureExtraction
2
Coverage
2
Bayesian
2
PrincipalComponent
2
mRNAMicroarray
2
ATACSeq
2
GeneticVariability
2
FunctionalGenomics
2
Clustering
2
bioconductor
2
WholeGenome
2
ChIPSeq
2
NetworkEnrichment
2
DNaseSeq
1
SystemsBiology
1
DNASeq
1
missing-value-imputation
1
ExomeSeq
1
MotifAnnotation
1
RiboSeq
1
bioc
1
gdc
1
integrative-analysis
1
tcga
1
tcga-data
1
tcgabiolinks
1
CopyNumber
1
Proteomics
1
Reactome
1
gene-regulation
1
gene-seq-analysis
1
pathway-analysis
1
methylation
1
imputation
1
Spatial
1
HiddenMarkovModel
1
GraphAndNetwork
1
SupportVectorMachine
1
microarray
1
AlternativeSplicing
1
DifferentialSplicing
1
ExonArray
1
MicroRNAArray
1
ProprietaryPlatforms
1
ExperimentHub
1
gene-expression-profiles
1
histone-modifications
1
multiomics
1
bioconductor-package
1
aberrant-methylation
1
epimutation
1
methylation-microarrays
1
next-generation-sequencing
1