bioconductor.org "MethylationArray" keyword
Top 1.9% on bioconductor.org
8 versions - Latest release: 5 months ago - 31 dependent packages - 950 thousand downloads total - 63 stars on GitHub - 1 maintainer
minfi 1.56.0
Analyze Illumina Infinium DNA methylation arrays8 versions - Latest release: 5 months ago - 31 dependent packages - 950 thousand downloads total - 63 stars on GitHub - 1 maintainer
methylCC 1.24.1
Estimate the cell composition of whole blood in DNA methylation samples7 versions - Latest release: 4 months ago - 14.2 thousand downloads total - 18 stars on GitHub - 1 maintainer
REMP 1.28.0
Repetitive Element Methylation Prediction3 versions - Latest release: almost 2 years ago - 12.8 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 10.0% on bioconductor.org
6 versions - Latest release: 4 months ago - 2 dependent packages - 58.4 thousand downloads total - 54 stars on GitHub - 1 maintainer
EpiDISH 2.26.0
Epigenetic Dissection of Intra-Sample-Heterogeneity6 versions - Latest release: 4 months ago - 2 dependent packages - 58.4 thousand downloads total - 54 stars on GitHub - 1 maintainer
Top 2.7% on bioconductor.org
8 versions - Latest release: 5 months ago - 7 dependent packages - 580 thousand downloads total - 339 stars on GitHub - 2 maintainers
TCGAbiolinks 2.38.0
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data8 versions - Latest release: 5 months ago - 7 dependent packages - 580 thousand downloads total - 339 stars on GitHub - 2 maintainers
conumee 1.44.0
Enhanced copy-number variation analysis using Illumina DNA methylation arrays6 versions - Latest release: 4 months ago - 37.9 thousand downloads total - 1 maintainer
MoonlightR 1.36.0
Identify oncogenes and tumor suppressor genes from omics data6 versions - Latest release: 4 months ago - 19.6 thousand downloads total - 17 stars on GitHub - 1 maintainer
planet 1.18.0
Placental DNA methylation analysis tools6 versions - Latest release: 4 months ago - 1 dependent package - 15.8 thousand downloads total - 4 stars on GitHub - 1 maintainer
knowYourCG 1.6.3
Functional analysis of DNA methylome datasets7 versions - Latest release: about 2 months ago - 6.06 thousand downloads total - 7 stars on GitHub - 1 maintainer
TDbasedUFE 1.10.0
Tensor Decomposition Based Unsupervised Feature Extraction6 versions - Latest release: 4 months ago - 1 dependent package - 7.25 thousand downloads total - 5 stars on GitHub - 1 maintainer
coMethDMR 1.14.0
Accurate identification of co-methylated and differentially methylated regions in epigenome-wide ...6 versions - Latest release: 4 months ago - 8.59 thousand downloads total - 7 stars on GitHub - 1 maintainer
Top 3.3% on bioconductor.org
14 versions - Latest release: 4 months ago - 2 dependent packages - 199 thousand downloads total - 1 maintainer
DMRcate 3.6.0
Methylation array and sequencing spatial analysis methods14 versions - Latest release: 4 months ago - 2 dependent packages - 199 thousand downloads total - 1 maintainer
TENET 1.2.0
R package for TENET (Tracing regulatory Element Networks using Epigenetic Traits) to identify key...3 versions - Latest release: 4 months ago - 2.7 thousand downloads total - 1 stars on GitHub - 1 maintainer
recountmethylation 1.20.0
Access and analyze public DNA methylation array data compilations6 versions - Latest release: 4 months ago - 11.2 thousand downloads total - 8 stars on GitHub - 1 maintainer
MEAT 1.22.0
Muscle Epigenetic Age Test6 versions - Latest release: 4 months ago - 11.5 thousand downloads total - 1 stars on GitHub - 1 maintainer
MBAmethyl 1.44.0
Model-based analysis of DNA methylation data6 versions - Latest release: 4 months ago - 18.8 thousand downloads total - 1 maintainer
MAGAR 1.18.0
MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation an...6 versions - Latest release: 4 months ago - 10.7 thousand downloads total - 0 stars on GitHub - 1 maintainer
shinyMethyl 1.46.0
Interactive visualization for Illumina methylation arrays6 versions - Latest release: 4 months ago - 35.9 thousand downloads total - 6 stars on GitHub - 1 maintainer
mitch 1.22.1
Multi-Contrast Gene Set Enrichment Analysis9 versions - Latest release: about 2 months ago - 14.8 thousand downloads total - 16 stars on GitHub - 1 maintainer
regionalpcs 1.8.0
Summarizing Regional Methylation with Regional Principal Components Analysis6 versions - Latest release: 2 months ago - 5.84 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 3.3% on bioconductor.org
7 versions - Latest release: 4 months ago - 5 dependent packages - 185 thousand downloads total - 4 maintainers
missMethyl 1.44.0
Analysing Illumina HumanMethylation BeadChip Data7 versions - Latest release: 4 months ago - 5 dependent packages - 185 thousand downloads total - 4 maintainers
MethylMix 2.40.0
MethylMix: Identifying methylation driven cancer genes6 versions - Latest release: 4 months ago - 31.1 thousand downloads total - 1 maintainer
TurboNorm 1.58.0
A fast scatterplot smoother suitable for microarray normalization6 versions - Latest release: 4 months ago - 31.4 thousand downloads total - 1 maintainer
MethylAid 1.44.0
Visual and interactive quality control of large Illumina DNA Methylation array data sets6 versions - Latest release: 4 months ago - 28.9 thousand downloads total - 1 maintainer
EnMCB 1.22.0
Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models6 versions - Latest release: 4 months ago - 11.2 thousand downloads total - 9 stars on GitHub - 1 maintainer
MethReg 1.20.0
Assessing the regulatory potential of DNA methylation regions or sites on gene transcription7 versions - Latest release: 4 months ago - 11.1 thousand downloads total - 4 stars on GitHub - 1 maintainer
bacon 1.38.0
Controlling bias and inflation in association studies using the empirical null distribution6 versions - Latest release: 4 months ago - 30.3 thousand downloads total - 1 maintainer
mCSEA 1.30.1
Methylated CpGs Set Enrichment Analysis8 versions - Latest release: 3 months ago - 1 dependent package - 17.7 thousand downloads total - 1 maintainer
ramr 1.18.0
Detection of Rare Aberrantly Methylated Regions in Array and NGS Data6 versions - Latest release: 4 months ago - 9.89 thousand downloads total - 0 stars on GitHub - 1 maintainer
TOAST 1.24.0
Tools for the analysis of heterogeneous tissues6 versions - Latest release: 4 months ago - 3 dependent packages - 36.5 thousand downloads total - 8 stars on GitHub - 1 maintainer
GeoTcgaData 2.10.0
Processing Various Types of Data on GEO and TCGA6 versions - Latest release: 4 months ago - 8.81 thousand downloads total - 28 stars on GitHub - 1 maintainer
TDbasedUFEadv 1.10.0
Advanced package of tensor decomposition based unsupervised feature extraction7 versions - Latest release: 4 months ago - 7.59 thousand downloads total - 0 stars on GitHub - 1 maintainer
methodical 1.6.0
Discovering genomic regions where methylation is strongly associated with transcriptional activity5 versions - Latest release: 4 months ago - 4.84 thousand downloads total - 0 stars on GitHub - 1 maintainer
GEM 1.36.0
GEM: fast association study for the interplay of Gene, Environment and Methylation6 versions - Latest release: 4 months ago - 16.4 thousand downloads total - 1 maintainer
COCOA 2.24.0
Coordinate Covariation Analysis6 versions - Latest release: 4 months ago - 15.2 thousand downloads total - 1 maintainer
Top 4.7% on bioconductor.org
6 versions - Latest release: 4 months ago - 1 dependent package - 80.7 thousand downloads total - 1 maintainer
RnBeads 2.28.0
RnBeads6 versions - Latest release: 4 months ago - 1 dependent package - 80.7 thousand downloads total - 1 maintainer
normalize450K 1.38.0
Preprocessing of Illumina Infinium 450K data6 versions - Latest release: 4 months ago - 16.1 thousand downloads total - 1 maintainer
betaHMM 1.6.0
A Hidden Markov Model Approach for Identifying Differentially Methylated Sites and Regions for Be...6 versions - Latest release: 4 months ago - 5.26 thousand downloads total - 1 maintainer
AMARETTO 1.26.0
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis an...6 versions - Latest release: 5 months ago - 17.2 thousand downloads total - 1 maintainer
bigmelon 1.36.0
Illumina methylation array analysis for large experiments6 versions - Latest release: 4 months ago - 22.3 thousand downloads total - 1 maintainer
Lheuristic 1.2.0
Detection of scatterplots with L-shaped pattern2 versions - Latest release: 4 months ago - 2.31 thousand downloads total - 0 stars on GitHub - 1 maintainer
ENmix 1.46.1
Quality control and analysis tools for Illumina DNA methylation BeadChip11 versions - Latest release: about 2 months ago - 48.8 thousand downloads total - 1 maintainer
Top 4.3% on bioconductor.org
7 versions - Latest release: 4 months ago - 1 dependent package - 158 thousand downloads total - 1 maintainer
ChAMP 2.40.0
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC7 versions - Latest release: 4 months ago - 1 dependent package - 158 thousand downloads total - 1 maintainer
methyLImp2 1.6.0
Missing value estimation of DNA methylation data4 versions - Latest release: 4 months ago - 5.45 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 5.6% on bioconductor.org
9 versions - Latest release: 3 months ago - 4 dependent packages - 90.3 thousand downloads total - 80 stars on GitHub - 1 maintainer
sesame 1.28.1
SEnsible Step-wise Analysis of DNA MEthylation BeadChips9 versions - Latest release: 3 months ago - 4 dependent packages - 90.3 thousand downloads total - 80 stars on GitHub - 1 maintainer
Moonlight2R 1.8.1
Identify oncogenes and tumor suppressor genes from omics data7 versions - Latest release: 2 months ago - 6.5 thousand downloads total - 5 stars on GitHub - 1 maintainer
coMET 1.40.0 removed
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methyl...6 versions - Latest release: 12 months ago - 24.4 thousand downloads total - 1 maintainer
Related Keywords
Software
47
DNAMethylation
42
DifferentialMethylation
23
Microarray
23
Epigenetics
19
GeneExpression
14
Preprocessing
14
TwoChannel
14
Sequencing
12
QualityControl
12
DifferentialExpression
10
Normalization
10
ImmunoOncology
9
DataImport
9
MethylSeq
8
Regression
7
GeneRegulation
7
MultipleComparison
6
BatchEffect
6
Network
6
GenomeWideAssociation
6
RNASeq
5
StatisticalMethod
5
Transcription
5
CpGIsland
5
GeneSetEnrichment
5
GeneTarget
4
OneChannel
4
Genetics
4
SingleCell
4
CopyNumberVariation
4
Survival
4
Pathways
4
GenomeAnnotation
3
BiomedicalInformatics
3
FunctionalGenomics
3
Transcriptomics
3
dna-methylation
3
bioinformatics
3
Visualization
3
SNP
3
MultiChannel
3
WholeGenome
2
GeneticVariability
2
Clustering
2
mRNAMicroarray
2
GenomicVariation
2
GUI
2
Bayesian
2
ATACSeq
2
ChIPSeq
2
TimeCourse
2
bioconductor
2
PrincipalComponent
2
Coverage
2
tensor-decomposition
2
NetworkEnrichment
2
Spatial
2
r
2
FeatureExtraction
2
MicroRNAArray
1
ExonArray
1
DifferentialSplicing
1
AlternativeSplicing
1
HiddenMarkovModel
1
SystemsBiology
1
tcgabiolinks
1
DNaseSeq
1
bioconductor-package
1
tcga-data
1
next-generation-sequencing
1
methylation-microarrays
1
ProprietaryPlatforms
1
l-shaped
1
methylation-expression
1
scatterplot-matrix
1
CopyNumber
1
imputation
1
methylation
1
missing-value-imputation
1
microarray
1
DNASeq
1
ExomeSeq
1
MotifAnnotation
1
RiboSeq
1
gdc
1
integrative-analysis
1
CellBiology
1
multiomics
1
bioc
1
HistoneModification
1
histone-modifications
1
gene-expression-profiles
1
ExperimentHub
1
tcga
1
GraphAndNetwork
1
placenta
1
machine-learning
1
inference
1
Proteomics
1