bioconductor.org "MethylationArray" keyword
View the packages on the bioconductor.org package registry that are tagged with the "MethylationArray" keyword.
Top 1.9% on bioconductor.org
7 versions - Latest release: 2 months ago - 31 dependent packages - 850 thousand downloads total - 60 stars on GitHub - 1 maintainer
minfi 1.54.1
Analyze Illumina Infinium DNA methylation arrays7 versions - Latest release: 2 months ago - 31 dependent packages - 850 thousand downloads total - 60 stars on GitHub - 1 maintainer
planet 1.16.0
Placental DNA methylation analysis tools5 versions - Latest release: 3 months ago - 1 dependent package - 11.9 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 3.3% on bioconductor.org
12 versions - Latest release: 3 months ago - 2 dependent packages - 166 thousand downloads total - 1 maintainer
DMRcate 3.4.0
Methylation array and sequencing spatial analysis methods12 versions - Latest release: 3 months ago - 2 dependent packages - 166 thousand downloads total - 1 maintainer
Top 10.0% on bioconductor.org
5 versions - Latest release: 2 months ago - 2 dependent packages - 43.7 thousand downloads total - 50 stars on GitHub - 1 maintainer
EpiDISH 2.24.0
Epigenetic Dissection of Intra-Sample-Heterogeneity5 versions - Latest release: 2 months ago - 2 dependent packages - 43.7 thousand downloads total - 50 stars on GitHub - 1 maintainer
methodical 1.4.0
Discovering genomic regions where methylation is strongly associated with transcriptional activity4 versions - Latest release: 3 months ago - 3.3 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 2.7% on bioconductor.org
7 versions - Latest release: 2 months ago - 7 dependent packages - 474 thousand downloads total - 321 stars on GitHub - 2 maintainers
TCGAbiolinks 2.36.0
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data7 versions - Latest release: 2 months ago - 7 dependent packages - 474 thousand downloads total - 321 stars on GitHub - 2 maintainers
betaHMM 1.4.1
A Hidden Markov Model Approach for Identifying Differentially Methylated Sites and Regions for Be...4 versions - Latest release: 2 months ago - 3.39 thousand downloads total - 1 maintainer
Top 5.6% on bioconductor.org
7 versions - Latest release: 3 months ago - 4 dependent packages - 71.1 thousand downloads total - 72 stars on GitHub - 1 maintainer
sesame 1.26.0
SEnsible Step-wise Analysis of DNA MEthylation BeadChips7 versions - Latest release: 3 months ago - 4 dependent packages - 71.1 thousand downloads total - 72 stars on GitHub - 1 maintainer
TDbasedUFEadv 1.8.1
Advanced package of tensor decomposition based unsupervised feature extraction6 versions - Latest release: 8 days ago - 5.09 thousand downloads total - 0 stars on GitHub - 1 maintainer
TDbasedUFE 1.8.0
Tensor Decomposition Based Unsupervised Feature Extraction5 versions - Latest release: 3 months ago - 1 dependent package - 5.19 thousand downloads total - 5 stars on GitHub - 1 maintainer
EnMCB 1.20.0
Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models5 versions - Latest release: 3 months ago - 8.98 thousand downloads total - 9 stars on GitHub - 1 maintainer
MEAT 1.20.0
Muscle Epigenetic Age Test5 versions - Latest release: 2 months ago - 8.58 thousand downloads total - 0 stars on GitHub - 1 maintainer
MAGAR 1.16.0
MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation an...5 versions - Latest release: 2 months ago - 8.23 thousand downloads total - 0 stars on GitHub - 1 maintainer
MBAmethyl 1.42.0
Model-based analysis of DNA methylation data5 versions - Latest release: 3 months ago - 16.3 thousand downloads total - 1 maintainer
knowYourCG 1.4.0
Functional analysis of DNA methylome datasets5 versions - Latest release: 2 months ago - 3.74 thousand downloads total - 3 stars on GitHub - 1 maintainer
TOAST 1.22.0
Tools for the analysis of heterogeneous tissues5 versions - Latest release: 3 months ago - 3 dependent packages - 28.4 thousand downloads total - 8 stars on GitHub - 1 maintainer
bigmelon 1.34.0
Illumina methylation array analysis for large experiments5 versions - Latest release: 3 months ago - 18.7 thousand downloads total - 1 maintainer
TENET 1.0.1
R package for TENET (Tracing regulatory Element Networks using Epigenetic Traits) to identify key...2 versions - Latest release: about 2 months ago - 937 downloads total - 1 stars on GitHub - 1 maintainer
conumee 1.42.0
Enhanced copy-number variation analysis using Illumina DNA methylation arrays5 versions - Latest release: 3 months ago - 30.4 thousand downloads total - 1 maintainer
MethylAid 1.42.0
Visual and interactive quality control of large Illumina DNA Methylation array data sets5 versions - Latest release: 3 months ago - 25.3 thousand downloads total - 1 maintainer
methylCC 1.22.0
Estimate the cell composition of whole blood in DNA methylation samples5 versions - Latest release: 3 months ago - 10.7 thousand downloads total - 19 stars on GitHub - 1 maintainer
ramr 1.16.0
Detection of Rare Aberrantly Methylated Regions in Array and NGS Data5 versions - Latest release: 3 months ago - 7.14 thousand downloads total - 0 stars on GitHub - 1 maintainer
shinyMethyl 1.44.0
Interactive visualization for Illumina methylation arrays5 versions - Latest release: 3 months ago - 31.5 thousand downloads total - 6 stars on GitHub - 1 maintainer
MethReg 1.18.0
Assessing the regulatory potential of DNA methylation regions or sites on gene transcription6 versions - Latest release: 3 months ago - 8.23 thousand downloads total - 4 stars on GitHub - 1 maintainer
coMethDMR 1.12.0
Accurate identification of co-methylated and differentially methylated regions in epigenome-wide ...5 versions - Latest release: 3 months ago - 6.08 thousand downloads total - 7 stars on GitHub - 1 maintainer
regionalpcs 1.6.0
Summarizing Regional Methylation with Regional Principal Components Analysis4 versions - Latest release: 3 months ago - 4.21 thousand downloads total - 3 stars on GitHub - 1 maintainer
AMARETTO 1.24.0
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis an...5 versions - Latest release: 3 months ago - 14.2 thousand downloads total - 1 maintainer
Top 4.7% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 65.6 thousand downloads total - 1 maintainer
RnBeads 2.26.0
RnBeads5 versions - Latest release: 3 months ago - 1 dependent package - 65.6 thousand downloads total - 1 maintainer
GEM 1.34.0
GEM: fast association study for the interplay of Gene, Environment and Methylation5 versions - Latest release: 3 months ago - 13.7 thousand downloads total - 1 maintainer
MethylMix 2.38.0
MethylMix: Identifying methylation driven cancer genes5 versions - Latest release: 3 months ago - 27.2 thousand downloads total - 1 maintainer
TurboNorm 1.56.0
A fast scatterplot smoother suitable for microarray normalization5 versions - Latest release: 3 months ago - 27.7 thousand downloads total - 1 maintainer
MoonlightR 1.34.0
Identify oncogenes and tumor suppressor genes from omics data5 versions - Latest release: 3 months ago - 16.1 thousand downloads total - 17 stars on GitHub - 1 maintainer
mitch 1.20.0
Multi-Contrast Gene Set Enrichment Analysis7 versions - Latest release: 3 months ago - 8.59 thousand downloads total - 16 stars on GitHub - 1 maintainer
GeoTcgaData 2.8.0
Processing Various Types of Data on GEO and TCGA5 versions - Latest release: 3 months ago - 6.23 thousand downloads total - 26 stars on GitHub - 1 maintainer
ENmix 1.44.1
Quality control and analysis tools for Illumina DNA methylation BeadChip8 versions - Latest release: about 2 months ago - 37.6 thousand downloads total - 1 maintainer
normalize450K 1.36.0
Preprocessing of Illumina Infinium 450K data5 versions - Latest release: 3 months ago - 13.5 thousand downloads total - 1 maintainer
recountmethylation 1.18.0
Access and analyze public DNA methylation array data compilations5 versions - Latest release: 3 months ago - 8.05 thousand downloads total - 8 stars on GitHub - 1 maintainer
methyLImp2 1.4.0
Missing value estimation of DNA methylation data3 versions - Latest release: 3 months ago - 3.43 thousand downloads total - 4 stars on GitHub - 1 maintainer
Moonlight2R 1.6.0
Identify oncogenes and tumor suppressor genes from omics data4 versions - Latest release: 3 months ago - 4.08 thousand downloads total - 5 stars on GitHub - 1 maintainer
COCOA 2.22.0
Coordinate Covariation Analysis5 versions - Latest release: 3 months ago - 11.2 thousand downloads total - 1 maintainer
bacon 1.36.0
Controlling bias and inflation in association studies using the empirical null distribution5 versions - Latest release: 3 months ago - 24.8 thousand downloads total - 1 maintainer
mCSEA 1.28.0
Methylated CpGs Set Enrichment Analysis6 versions - Latest release: 3 months ago - 1 dependent package - 14.2 thousand downloads total - 1 maintainer
Lheuristic 1.0.0
Detection of scatterplots with L-shaped pattern1 version - Latest release: 3 months ago - 681 downloads total - 1 maintainer
Top 4.3% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 136 thousand downloads total - 1 maintainer
ChAMP 2.38.0
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC5 versions - Latest release: 3 months ago - 1 dependent package - 136 thousand downloads total - 1 maintainer
coMET 1.40.0
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methyl...6 versions - Latest release: 3 months ago - 23.5 thousand downloads total - 1 maintainer
Top 3.3% on bioconductor.org
6 versions - Latest release: 3 months ago - 5 dependent packages - 149 thousand downloads total - 4 maintainers
missMethyl 1.42.0
Analysing Illumina HumanMethylation BeadChip Data6 versions - Latest release: 3 months ago - 5 dependent packages - 149 thousand downloads total - 4 maintainers
REMP 1.28.0
Repetitive Element Methylation Prediction3 versions - Latest release: about 1 year ago - 12.8 thousand downloads total - 2 stars on GitHub - 1 maintainer
Related Keywords
Software
47
DNAMethylation
42
DifferentialMethylation
23
Microarray
23
Epigenetics
19
GeneExpression
14
TwoChannel
14
Preprocessing
14
Sequencing
12
QualityControl
12
DifferentialExpression
10
Normalization
10
ImmunoOncology
9
DataImport
9
MethylSeq
8
GeneRegulation
7
Regression
7
GenomeWideAssociation
6
Network
6
MultipleComparison
6
BatchEffect
6
StatisticalMethod
5
RNASeq
5
GeneSetEnrichment
5
CpGIsland
5
Survival
4
Pathways
4
GeneTarget
4
CopyNumberVariation
4
Transcription
4
SingleCell
4
OneChannel
4
Genetics
4
MultiChannel
3
dna-methylation
3
bioinformatics
3
BiomedicalInformatics
3
SNP
3
FunctionalGenomics
3
Transcriptomics
3
GenomeAnnotation
3
Visualization
3
mRNAMicroarray
2
Bayesian
2
NetworkEnrichment
2
ATACSeq
2
GeneticVariability
2
PrincipalComponent
2
ChIPSeq
2
Clustering
2
GUI
2
GenomicVariation
2
tensor-decomposition
2
FeatureExtraction
2
bioconductor
2
r
2
Coverage
2
WholeGenome
2
Spatial
2
TimeCourse
2
genetics
1
pathway-analysis
1
gene-seq-analysis
1
gene-regulation
1
Reactome
1
Proteomics
1
inference
1
ProprietaryPlatforms
1
MicroRNAArray
1
machine-learning
1
epigenetics
1
ExperimentHub
1
imputation
1
methylation
1
missing-value-imputation
1
dna-methylation-data
1
DNaseSeq
1
ancestry
1
SystemsBiology
1
CopyNumber
1
DNASeq
1
ExomeSeq
1
MotifAnnotation
1
RiboSeq
1
bioconductor-package
1
gene-expression-profiles
1
histone-modifications
1
multiomics
1
SupportVectorMachine
1
microarray
1
HiddenMarkovModel
1
tcgabiolinks
1
GraphAndNetwork
1
tcga-data
1
tcga
1
integrative-analysis
1
CellBiology
1
gdc
1
HistoneModification
1
bioc
1