bioconductor.org "MotifAnnotation" keyword
View the packages on the bioconductor.org package registry that are tagged with the "MotifAnnotation" keyword.
immApex 1.2.5
Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning7 versions - Latest release: 3 days ago - 2.09 thousand downloads total - 12 stars on GitHub - 1 maintainer
memes 1.16.0
motif matching, comparison, and de novo discovery using the MEME Suite5 versions - Latest release: 3 months ago - 17.2 thousand downloads total - 43 stars on GitHub - 1 maintainer
Top 4.5% on bioconductor.org
5 versions - Latest release: 2 months ago - 17 dependent packages - 392 thousand downloads total - 29 stars on GitHub - 1 maintainer
TFBSTools 1.46.0
Software Package for Transcription Factor Binding Site (TFBS) Analysis5 versions - Latest release: 2 months ago - 17 dependent packages - 392 thousand downloads total - 29 stars on GitHub - 1 maintainer
universalmotif 1.26.2
Import, Modify, and Export Motifs with R7 versions - Latest release: 3 months ago - 4 dependent packages - 55.3 thousand downloads total - 1 maintainer
motifTestR 1.4.0
Perform key tests for binding motifs in sequence data6 versions - Latest release: 2 months ago - 3.88 thousand downloads total - 1 stars on GitHub - 1 maintainer
monaLisa 1.14.0
Binned Motif Enrichment Analysis and Visualization7 versions - Latest release: 3 months ago - 12.3 thousand downloads total - 40 stars on GitHub - 1 maintainer
RCAS 1.34.0
RNA Centric Annotation System6 versions - Latest release: 3 months ago - 1 dependent package - 20.4 thousand downloads total - 1 maintainer
Top 6.2% on bioconductor.org
5 versions - Latest release: 3 months ago - 2 dependent packages - 46.2 thousand downloads total - 1 maintainer
PWMEnrich 4.44.0
PWM enrichment analysis5 versions - Latest release: 3 months ago - 2 dependent packages - 46.2 thousand downloads total - 1 maintainer
motifcounter 1.32.0
R package for analysing TFBSs in DNA sequences5 versions - Latest release: 3 months ago - 24.1 thousand downloads total - 1 maintainer
LedPred 1.42.0
Learning from DNA to Predict Enhancers5 versions - Latest release: 3 months ago - 14.7 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 3.6% on bioconductor.org
5 versions - Latest release: 3 months ago - 10 dependent packages - 125 thousand downloads total - 1 maintainer
motifStack 1.52.0
Plot stacked logos for single or multiple DNA, RNA and amino acid sequence5 versions - Latest release: 3 months ago - 10 dependent packages - 125 thousand downloads total - 1 maintainer
DiffLogo 2.32.0
DiffLogo: A comparative visualisation of biooligomer motifs5 versions - Latest release: 3 months ago - 17.3 thousand downloads total - 8 stars on GitHub
SELEX 1.40.0
Functions for analyzing SELEX-seq data5 versions - Latest release: 3 months ago - 17.2 thousand downloads total - 1 maintainer
MatrixRider 1.40.0
Obtain total affinity and occupancies for binding site matrices on a given sequence5 versions - Latest release: 3 months ago - 16.6 thousand downloads total - 1 maintainer
Top 7.4% on bioconductor.org
5 versions - Latest release: 3 months ago - 44.3 thousand downloads total - 1 maintainer
ELMER 2.32.0
Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes5 versions - Latest release: 3 months ago - 44.3 thousand downloads total - 1 maintainer
Top 3.6% on bioconductor.org
5 versions - Latest release: 3 months ago - 18 dependent packages - 117 thousand downloads total - 1 maintainer
MotifDb 1.50.0
An Annotated Collection of Protein-DNA Binding Sequence Motifs5 versions - Latest release: 3 months ago - 18 dependent packages - 117 thousand downloads total - 1 maintainer
Top 4.1% on bioconductor.org
5 versions - Latest release: 3 months ago - 11 dependent packages - 125 thousand downloads total - 1 maintainer
motifmatchr 1.30.0
Fast Motif Matching in R5 versions - Latest release: 3 months ago - 11 dependent packages - 125 thousand downloads total - 1 maintainer
atSNP 1.24.0
Affinity test for identifying regulatory SNPs5 versions - Latest release: 3 months ago - 12.3 thousand downloads total - 1 stars on GitHub - 1 maintainer
motifbreakR 2.22.0
A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription F...5 versions - Latest release: 3 months ago - 27.8 thousand downloads total - 24 stars on GitHub - 1 maintainer
periodicDNA 1.18.0
Set of tools to identify periodic occurrences of k-mers in DNA sequences5 versions - Latest release: 3 months ago - 7.21 thousand downloads total - 6 stars on GitHub - 1 maintainer
seqArchRplus 1.8.0
Downstream analyses of promoter sequence architectures and HTML report generation5 versions - Latest release: 3 months ago - 4.6 thousand downloads total - 1 stars on GitHub - 1 maintainer
branchpointer 1.34.0
Prediction of intronic splicing branchpoints5 versions - Latest release: 3 months ago - 15.1 thousand downloads total - 1 maintainer
Top 3.8% on bioconductor.org
6 versions - Latest release: 2 months ago - 105 thousand downloads total - 1 maintainer
RcisTarget 1.28.1
RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic re...6 versions - Latest release: 2 months ago - 105 thousand downloads total - 1 maintainer
coMET 1.40.0
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methyl...6 versions - Latest release: 3 months ago - 23.5 thousand downloads total - 1 maintainer
enrichTF 1.20.0 removed
Transcription Factors Enrichment Analysis3 versions - Latest release: about 1 year ago - 7.2 thousand downloads total - 2 stars on GitHub - 1 maintainer
Related Keywords
Software
25
Visualization
7
GeneRegulation
7
SequenceMatching
7
Transcription
7
MotifDiscovery
6
ChIPSeq
6
Sequencing
5
DataImport
4
Alignment
4
GenomeAnnotation
3
GeneTarget
3
Coverage
2
GO
2
GeneSetEnrichment
2
Transcriptomics
2
Microarray
2
Genetics
2
DNAMethylation
2
FunctionalGenomics
2
Classification
2
Annotation
2
GraphAndNetwork
1
RiboSeq
1
RNASeq
1
MethylationArray
1
MethylSeq
1
GenomeWideAssociation
1
ExomeSeq
1
DifferentialMethylation
1
DNASeq
1
GenomicVariation
1
ReportWriting
1
Clustering
1
Network
1
GeneExpression
1
MultipleComparison
1
ImmunoOncology
1
ChIPchip
1
SupportVectorMachine
1
SingleCell
1
ChipOnChip
1
Epigenetics
1
FeatureExtraction
1