bioconductor.org "MotifAnnotation" keyword
motifbreakR 2.24.0
A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription F...6 versions - Latest release: 3 months ago - 35.9 thousand downloads total - 24 stars on GitHub - 1 maintainer
branchpointer 1.35.1
Prediction of intronic splicing branchpoints6 versions - Latest release: 3 months ago - 17.7 thousand downloads total - 1 maintainer
SELEX 1.42.0
Functions for analyzing SELEX-seq data6 versions - Latest release: 3 months ago - 20.4 thousand downloads total - 1 maintainer
Top 3.6% on bioconductor.org
6 versions - Latest release: 3 months ago - 18 dependent packages - 144 thousand downloads total - 1 maintainer
MotifDb 1.52.0
An Annotated Collection of Protein-DNA Binding Sequence Motifs6 versions - Latest release: 3 months ago - 18 dependent packages - 144 thousand downloads total - 1 maintainer
Top 7.4% on bioconductor.org
7 versions - Latest release: 1 day ago - 51.3 thousand downloads total - 1 maintainer
ELMER 2.34.2
Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes7 versions - Latest release: 1 day ago - 51.3 thousand downloads total - 1 maintainer
Top 3.6% on bioconductor.org
6 versions - Latest release: 3 months ago - 10 dependent packages - 151 thousand downloads total - 1 maintainer
motifStack 1.54.0
Plot stacked logos for single or multiple DNA, RNA and amino acid sequence6 versions - Latest release: 3 months ago - 10 dependent packages - 151 thousand downloads total - 1 maintainer
DiffLogo 2.34.0
DiffLogo: A comparative visualisation of biooligomer motifs6 versions - Latest release: 3 months ago - 20.6 thousand downloads total - 8 stars on GitHub
atSNP 1.26.0
Affinity test for identifying regulatory SNPs6 versions - Latest release: 4 months ago - 15.8 thousand downloads total - 1 stars on GitHub - 1 maintainer
seqArchRplus 1.10.0
Downstream analyses of promoter sequence architectures and HTML report generation7 versions - Latest release: 10 days ago - 5.92 thousand downloads total - 1 stars on GitHub - 1 maintainer
RCAS 1.36.0
RNA Centric Annotation System7 versions - Latest release: 3 months ago - 1 dependent package - 24 thousand downloads total - 1 maintainer
Top 4.1% on bioconductor.org
6 versions - Latest release: 3 months ago - 11 dependent packages - 169 thousand downloads total - 1 maintainer
motifmatchr 1.32.0
Fast Motif Matching in R6 versions - Latest release: 3 months ago - 11 dependent packages - 169 thousand downloads total - 1 maintainer
motifTestR 1.6.1
Perform key tests for binding motifs in sequence data9 versions - Latest release: 4 months ago - 6.48 thousand downloads total - 1 stars on GitHub - 1 maintainer
enrichTF 1.20.0 removed
Transcription Factors Enrichment Analysis3 versions - Latest release: almost 2 years ago - 7.2 thousand downloads total - 2 stars on GitHub - 1 maintainer
memes 1.18.0
motif matching, comparison, and de novo discovery using the MEME Suite6 versions - Latest release: 3 months ago - 22.4 thousand downloads total - 43 stars on GitHub - 1 maintainer
Top 4.5% on bioconductor.org
6 versions - Latest release: 3 months ago - 17 dependent packages - 478 thousand downloads total - 30 stars on GitHub - 1 maintainer
TFBSTools 1.48.0
Software Package for Transcription Factor Binding Site (TFBS) Analysis6 versions - Latest release: 3 months ago - 17 dependent packages - 478 thousand downloads total - 30 stars on GitHub - 1 maintainer
immApex 1.4.3
Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning9 versions - Latest release: 2 months ago - 6.16 thousand downloads total - 12 stars on GitHub - 1 maintainer
periodicDNA 1.20.0
Set of tools to identify periodic occurrences of k-mers in DNA sequences6 versions - Latest release: 4 months ago - 10.1 thousand downloads total - 6 stars on GitHub - 1 maintainer
universalmotif 1.28.0
Import, Modify, and Export Motifs with R9 versions - Latest release: 3 months ago - 4 dependent packages - 77.5 thousand downloads total - 1 maintainer
LedPred 1.44.0
Learning from DNA to Predict Enhancers6 versions - Latest release: 3 months ago - 16.7 thousand downloads total - 3 stars on GitHub - 1 maintainer
MatrixRider 1.42.0
Obtain total affinity and occupancies for binding site matrices on a given sequence6 versions - Latest release: 3 months ago - 19.4 thousand downloads total - 1 maintainer
Top 3.8% on bioconductor.org
7 versions - Latest release: 3 months ago - 127 thousand downloads total - 1 maintainer
RcisTarget 1.29.0
RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic re...7 versions - Latest release: 3 months ago - 127 thousand downloads total - 1 maintainer
Top 6.2% on bioconductor.org
6 versions - Latest release: 3 months ago - 2 dependent packages - 53.7 thousand downloads total - 1 maintainer
PWMEnrich 4.46.0
PWM enrichment analysis6 versions - Latest release: 3 months ago - 2 dependent packages - 53.7 thousand downloads total - 1 maintainer
motifcounter 1.34.0
R package for analysing TFBSs in DNA sequences6 versions - Latest release: 3 months ago - 26.7 thousand downloads total - 1 maintainer
monaLisa 1.16.0
Binned Motif Enrichment Analysis and Visualization9 versions - Latest release: 3 months ago - 15.9 thousand downloads total - 41 stars on GitHub - 1 maintainer
coMET 1.40.0 removed
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methyl...6 versions - Latest release: 11 months ago - 24.4 thousand downloads total - 1 maintainer
Related Keywords
Software
25
Transcription
7
Visualization
7
GeneRegulation
7
SequenceMatching
7
ChIPSeq
6
MotifDiscovery
6
Sequencing
5
Alignment
4
DataImport
4
GenomeAnnotation
3
GeneTarget
3
GO
2
Coverage
2
GeneSetEnrichment
2
Transcriptomics
2
FunctionalGenomics
2
Classification
2
Genetics
2
Annotation
2
Microarray
2
DNAMethylation
2
RiboSeq
1
RNASeq
1
MethylationArray
1
MethylSeq
1
GenomeWideAssociation
1
ExomeSeq
1
DifferentialMethylation
1
DNASeq
1
FeatureExtraction
1
Epigenetics
1
GenomicVariation
1
SupportVectorMachine
1
SingleCell
1
ImmunoOncology
1
GeneExpression
1
GraphAndNetwork
1
ChipOnChip
1
Network
1
ChIPchip
1
MultipleComparison
1
ReportWriting
1
Clustering
1