bioconductor.org "OneChannel" keyword
Top 1.7% on bioconductor.org
7 versions - Latest release: about 1 month ago - 30 dependent packages - 1.17 million downloads total - 1 maintainer
vsn 3.78.1
Variance stabilization and calibration for microarray data7 versions - Latest release: about 1 month ago - 30 dependent packages - 1.17 million downloads total - 1 maintainer
Top 8.9% on bioconductor.org
6 versions - Latest release: 3 months ago - 41.5 thousand downloads total - 1 maintainer
copa 1.78.0
Functions to perform cancer outlier profile analysis.6 versions - Latest release: 3 months ago - 41.5 thousand downloads total - 1 maintainer
Top 3.8% on bioconductor.org
6 versions - Latest release: 3 months ago - 3 dependent packages - 418 thousand downloads total - 1 stars on GitHub - 1 maintainer
aroma.light 3.40.0
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Da...6 versions - Latest release: 3 months ago - 3 dependent packages - 418 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 0.9% on bioconductor.org
6 versions - Latest release: 4 months ago - 74 dependent packages - 2.25 million downloads total - 1 maintainer
affy 1.88.0
Methods for Affymetrix Oligonucleotide Arrays6 versions - Latest release: 4 months ago - 74 dependent packages - 2.25 million downloads total - 1 maintainer
CopyNumberPlots 1.26.0
Create Copy-Number Plots using karyoploteR functionality7 versions - Latest release: 4 months ago - 2 dependent packages - 16.5 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 4.3% on bioconductor.org
6 versions - Latest release: 3 months ago - 70.5 thousand downloads total - 1 maintainer
affycomp 1.86.0
Graphics Toolbox for Assessment of Affymetrix Expression Measures6 versions - Latest release: 3 months ago - 70.5 thousand downloads total - 1 maintainer
Top 1.8% on bioconductor.org
6 versions - Latest release: 4 months ago - 10 dependent packages - 406 thousand downloads total - 1 maintainer
lumi 2.62.0
BeadArray Specific Methods for Illumina Methylation and Expression Microarrays6 versions - Latest release: 4 months ago - 10 dependent packages - 406 thousand downloads total - 1 maintainer
AMARETTO 1.26.0
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis an...6 versions - Latest release: 4 months ago - 17.2 thousand downloads total - 1 maintainer
Top 1.4% on bioconductor.org
6 versions - Latest release: 4 months ago - 47 dependent packages - 2.34 million downloads total - 105 stars on GitHub - 1 maintainer
GEOquery 2.78.0
Get data from NCBI Gene Expression Omnibus (GEO)6 versions - Latest release: 4 months ago - 47 dependent packages - 2.34 million downloads total - 105 stars on GitHub - 1 maintainer
Top 4.8% on bioconductor.org
6 versions - Latest release: 3 months ago - 78.5 thousand downloads total - 1 maintainer
affylmGUI 1.84.0
GUI for limma Package with Affymetrix Microarrays6 versions - Latest release: 3 months ago - 78.5 thousand downloads total - 1 maintainer
PAA 1.44.0
PAA (Protein Array Analyzer)6 versions - Latest release: 3 months ago - 25.9 thousand downloads total - 2 maintainers
Top 0.3% on bioconductor.org
16 versions - Latest release: 4 months ago - 322 dependent packages - 6.96 million downloads total - 1 maintainer
limma 3.66.0
Linear Models for Microarray and Omics Data16 versions - Latest release: 4 months ago - 322 dependent packages - 6.96 million downloads total - 1 maintainer
lmdme 1.52.0
Linear Model decomposition for Designed Multivariate Experiments6 versions - Latest release: 3 months ago - 29 thousand downloads total - 1 maintainer
ENmix 1.46.1
Quality control and analysis tools for Illumina DNA methylation BeadChip11 versions - Latest release: 30 days ago - 48.8 thousand downloads total - 1 maintainer
Top 9.1% on bioconductor.org
6 versions - Latest release: 4 months ago - 39 thousand downloads total - 1 maintainer
Harshlight 1.82.0
A "corrective make-up" program for microarray chips6 versions - Latest release: 4 months ago - 39 thousand downloads total - 1 maintainer
clippda 1.60.0
A package for the clinical proteomic profiling data analysis6 versions - Latest release: 3 months ago - 35.6 thousand downloads total - 1 maintainer
Top 8.9% on bioconductor.org
6 versions - Latest release: 4 months ago - 1 dependent package - 51 thousand downloads total - 1 maintainer
altcdfenvs 2.72.0
alternative CDF environments (aka probeset mappings)6 versions - Latest release: 4 months ago - 1 dependent package - 51 thousand downloads total - 1 maintainer
Top 9.8% on bioconductor.org
7 versions - Latest release: 3 months ago - 1 dependent package - 40.1 thousand downloads total - 1 maintainer
EGSEA 1.38.0
Ensemble of Gene Set Enrichment Analyses7 versions - Latest release: 3 months ago - 1 dependent package - 40.1 thousand downloads total - 1 maintainer
Top 6.4% on bioconductor.org
6 versions - Latest release: 3 months ago - 2 dependent packages - 394 thousand downloads total - 1 maintainer
annaffy 1.82.0
Annotation tools for Affymetrix biological metadata6 versions - Latest release: 3 months ago - 2 dependent packages - 394 thousand downloads total - 1 maintainer
iChip 1.64.0
Bayesian Modeling of ChIP-chip Data Through Hidden Ising Models6 versions - Latest release: 3 months ago - 32.6 thousand downloads total - 1 maintainer
Top 9.4% on bioconductor.org
6 versions - Latest release: 3 months ago - 37.4 thousand downloads total - 1 maintainer
GeneRegionScan 1.66.0
GeneRegionScan6 versions - Latest release: 3 months ago - 37.4 thousand downloads total - 1 maintainer
snm 1.58.0
Supervised Normalization of Microarrays6 versions - Latest release: 3 months ago - 1 dependent package - 46.1 thousand downloads total - 1 maintainer
AffyRNADegradation 1.56.0
Analyze and correct probe positional bias in microarray data due to RNA degradation6 versions - Latest release: 3 months ago - 36.1 thousand downloads total - 1 maintainer
Top 3.2% on bioconductor.org
7 versions - Latest release: 30 days ago - 5 dependent packages - 234 thousand downloads total - 1 maintainer
beadarray 2.60.0
Quality assessment and low-level analysis for Illumina BeadArray data7 versions - Latest release: 30 days ago - 5 dependent packages - 234 thousand downloads total - 1 maintainer
Top 2.7% on bioconductor.org
6 versions - Latest release: 3 months ago - 2 dependent packages - 140 thousand downloads total - 1 maintainer
affycoretools 1.82.0
Functions useful for those doing repetitive analyses with Affymetrix GeneChips6 versions - Latest release: 3 months ago - 2 dependent packages - 140 thousand downloads total - 1 maintainer
Top 7.5% on bioconductor.org
6 versions - Latest release: 3 months ago - 42 thousand downloads total - 1 maintainer
webbioc 1.82.0
Bioconductor Web Interface6 versions - Latest release: 3 months ago - 42 thousand downloads total - 1 maintainer
Top 4.0% on bioconductor.org
6 versions - Latest release: 3 months ago - 145 thousand downloads total - 1 maintainer
GlobalAncova 4.28.0
Global test for groups of variables via model comparisons6 versions - Latest release: 3 months ago - 145 thousand downloads total - 1 maintainer
MSstatsShiny 1.12.1
MSstats GUI for Statistical Anaylsis of Proteomics Experiments11 versions - Latest release: 6 days ago - 9.86 thousand downloads total - 9 stars on GitHub - 1 maintainer
pvac 1.58.0
PCA-based gene filtering for Affymetrix arrays6 versions - Latest release: 4 months ago - 31.7 thousand downloads total - 2 maintainers
Top 3.2% on bioconductor.org
8 versions - Latest release: 4 months ago - 11 dependent packages - 511 thousand downloads total - 3 stars on GitHub - 1 maintainer
oligo 1.74.0
Preprocessing tools for oligonucleotide arrays8 versions - Latest release: 4 months ago - 11 dependent packages - 511 thousand downloads total - 3 stars on GitHub - 1 maintainer
MSstatsLiP 1.16.0
LiP Significance Analysis in shotgun mass spectrometry-based proteomic experiments10 versions - Latest release: 4 months ago - 9.69 thousand downloads total - 3 stars on GitHub - 1 maintainer
affxparser 1.82.0
Affymetrix File Parsing SDK6 versions - Latest release: 4 months ago - 10 dependent packages - 406 thousand downloads total - 8 stars on GitHub - 1 maintainer
Top 6.5% on bioconductor.org
6 versions - Latest release: 3 months ago - 2 dependent packages - 53.5 thousand downloads total - 1 maintainer
PADOG 1.52.0
Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)6 versions - Latest release: 3 months ago - 2 dependent packages - 53.5 thousand downloads total - 1 maintainer
Top 8.4% on bioconductor.org
6 versions - Latest release: 4 months ago - 1 dependent package - 41.3 thousand downloads total - 1 maintainer
gaga 2.56.0
GaGa hierarchical model for high-throughput data analysis6 versions - Latest release: 4 months ago - 1 dependent package - 41.3 thousand downloads total - 1 maintainer
iCheck 1.40.0
QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data6 versions - Latest release: 3 months ago - 19.7 thousand downloads total - 1 maintainer
Top 7.0% on bioconductor.org
6 versions - Latest release: 3 months ago - 44.4 thousand downloads total - 1 maintainer
SCAN.UPC 2.52.0
Single-channel array normalization (SCAN) and Universal exPression Codes (UPC)6 versions - Latest release: 3 months ago - 44.4 thousand downloads total - 1 maintainer
Top 2.9% on bioconductor.org
6 versions - Latest release: 3 months ago - 9 dependent packages - 690 thousand downloads total - 1 maintainer
gcrma 2.82.0
Background Adjustment Using Sequence Information6 versions - Latest release: 3 months ago - 9 dependent packages - 690 thousand downloads total - 1 maintainer
affyILM 1.62.0
Linear Model of background subtraction and the Langmuir isotherm6 versions - Latest release: 3 months ago - 40.1 thousand downloads total - 1 maintainer
diffcoexp 1.30.0
Differential Co-expression Analysis6 versions - Latest release: 3 months ago - 18.8 thousand downloads total - 16 stars on GitHub - 1 maintainer
cyanoFilter 1.18.0
Phytoplankton Population Identification using Cell Pigmentation and/or Complexity6 versions - Latest release: 3 months ago - 10.4 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 3.3% on bioconductor.org
14 versions - Latest release: 3 months ago - 2 dependent packages - 197 thousand downloads total - 1 maintainer
DMRcate 3.6.0
Methylation array and sequencing spatial analysis methods14 versions - Latest release: 3 months ago - 2 dependent packages - 197 thousand downloads total - 1 maintainer
EWCE 1.18.0
Expression Weighted Celltype Enrichment7 versions - Latest release: 3 months ago - 20.5 thousand downloads total - 53 stars on GitHub - 1 maintainer
protGear 1.14.0
Protein Micro Array Data Management and Interactive Visualization6 versions - Latest release: 4 months ago - 9.72 thousand downloads total - 1 stars on GitHub - 1 maintainer
cytomapper 1.22.0
Visualization of highly multiplexed imaging data in R6 versions - Latest release: 4 months ago - 3 dependent packages - 34.2 thousand downloads total - 33 stars on GitHub - 1 maintainer
TurboNorm 1.58.0
A fast scatterplot smoother suitable for microarray normalization6 versions - Latest release: 3 months ago - 30.9 thousand downloads total - 1 maintainer
Top 4.1% on bioconductor.org
6 versions - Latest release: 3 months ago - 1 dependent package - 89.9 thousand downloads total - 1 maintainer
makecdfenv 1.86.0
CDF Environment Maker6 versions - Latest release: 3 months ago - 1 dependent package - 89.9 thousand downloads total - 1 maintainer
Top 9.0% on bioconductor.org
6 versions - Latest release: 3 months ago - 34.3 thousand downloads total - 1 maintainer
RLMM 1.72.0
A Genotype Calling Algorithm for Affymetrix SNP Arrays6 versions - Latest release: 3 months ago - 34.3 thousand downloads total - 1 maintainer
MSstatsPTM 2.12.0
Statistical Characterization of Post-translational Modifications12 versions - Latest release: 3 months ago - 2 dependent packages - 18.8 thousand downloads total - 6 stars on GitHub - 1 maintainer
SNAGEE 1.50.0
Signal-to-Noise applied to Gene Expression Experiments6 versions - Latest release: 3 months ago - 25.5 thousand downloads total - 1 maintainer
Top 9.1% on bioconductor.org
6 versions - Latest release: 3 months ago - 1 dependent package - 43.8 thousand downloads total - 0 stars on GitHub - 2 maintainers
codelink 1.78.0
Manipulation of Codelink microarray data6 versions - Latest release: 3 months ago - 1 dependent package - 43.8 thousand downloads total - 0 stars on GitHub - 2 maintainers
Top 9.9% on bioconductor.org
6 versions - Latest release: 3 months ago - 2 dependent packages - 60.3 thousand downloads total - 1 maintainer
tilingArray 1.88.0
Transcript mapping with high-density oligonucleotide tiling arrays6 versions - Latest release: 3 months ago - 2 dependent packages - 60.3 thousand downloads total - 1 maintainer
Top 4.5% on bioconductor.org
7 versions - Latest release: 3 months ago - 1 dependent package - 152 thousand downloads total - 1 maintainer
ArrayExpress 1.70.0
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures:...7 versions - Latest release: 3 months ago - 1 dependent package - 152 thousand downloads total - 1 maintainer
MSstatsLOBD 1.18.0
Assay characterization: estimation of limit of blanc(LoB) and limit of detection(LOD)6 versions - Latest release: 3 months ago - 7.75 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 4.3% on bioconductor.org
7 versions - Latest release: 30 days ago - 214 thousand downloads total - 1 stars on GitHub - 1 maintainer
arrayQualityMetrics 3.66.0
Quality metrics report for microarray data sets7 versions - Latest release: 30 days ago - 214 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 5.3% on bioconductor.org
6 versions - Latest release: 3 months ago - 1 dependent package - 55.8 thousand downloads total - 1 maintainer
puma 3.52.0
Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and ex...6 versions - Latest release: 3 months ago - 1 dependent package - 55.8 thousand downloads total - 1 maintainer
cytoviewer 1.10.0
An interactive multi-channel image viewer for R6 versions - Latest release: 4 months ago - 8.06 thousand downloads total - 7 stars on GitHub - 1 maintainer
ExiMiR 2.52.0
R functions for the normalization of Exiqon miRNA array data6 versions - Latest release: 3 months ago - 32.9 thousand downloads total - 1 maintainer
affyPLM 1.86.0
Methods for fitting probe-level models6 versions - Latest release: 3 months ago - 9 dependent packages - 631 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 3.0% on bioconductor.org
6 versions - Latest release: 3 months ago - 4 dependent packages - 229 thousand downloads total - 5 stars on GitHub - 1 maintainer
gage 2.60.0
Generally Applicable Gene-set Enrichment for Pathway Analysis6 versions - Latest release: 3 months ago - 4 dependent packages - 229 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 7.8% on bioconductor.org
6 versions - Latest release: 3 months ago - 59.1 thousand downloads total - 1 maintainer
AgiMicroRna 2.60.0
Processing and Differential Expression Analysis of Agilent microRNA chips6 versions - Latest release: 3 months ago - 59.1 thousand downloads total - 1 maintainer
ABarray 1.78.0
Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1...6 versions - Latest release: 3 months ago - 53.6 thousand downloads total - 1 maintainer
Top 9.1% on bioconductor.org
6 versions - Latest release: 3 months ago - 33.3 thousand downloads total - 1 maintainer
lapmix 1.76.0
Laplace Mixture Model in Microarray Experiments6 versions - Latest release: 3 months ago - 33.3 thousand downloads total - 1 maintainer
roastgsa 1.8.0
Rotation based gene set analysis5 versions - Latest release: 3 months ago - 5.48 thousand downloads total - 0 stars on GitHub - 1 maintainer
cytoKernel 1.16.0
Differential expression using kernel-based score test6 versions - Latest release: 3 months ago - 8.08 thousand downloads total - 0 stars on GitHub - 1 maintainer
PROMISE 1.62.0
PRojection Onto the Most Interesting Statistical Evidence6 versions - Latest release: 3 months ago - 1 dependent package - 32.4 thousand downloads total - 2 maintainers
CAFE 1.46.0
Chromosmal Aberrations Finder in Expression data6 versions - Latest release: 3 months ago - 25.6 thousand downloads total - 1 maintainer
Top 2.9% on bioconductor.org
7 versions - Latest release: 4 months ago - 8 dependent packages - 138 thousand downloads total - 344 stars on GitHub - 1 maintainer
karyoploteR 1.36.0
Plot customizable linear genomes displaying arbitrary data7 versions - Latest release: 4 months ago - 8 dependent packages - 138 thousand downloads total - 344 stars on GitHub - 1 maintainer
annmap 1.52.0
Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.6 versions - Latest release: 4 months ago - 27.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 2.7% on bioconductor.org
6 versions - Latest release: 4 months ago - 6 dependent packages - 297 thousand downloads total - 1 maintainer
globaltest 5.64.0
Testing Groups of Covariates/Features for Association with a Response Variable, with Applications...6 versions - Latest release: 4 months ago - 6 dependent packages - 297 thousand downloads total - 1 maintainer
crossmeta 1.34.0 removed
Cross Platform Meta-Analysis of Microarray Data5 versions - Latest release: 10 months ago - 1 dependent package - 19.4 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 7.4% on bioconductor.org
3 versions - Latest release: almost 2 years ago - 32.9 thousand downloads total - 1 maintainer
RefPlus 1.74.0 removed
A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.3 versions - Latest release: almost 2 years ago - 32.9 thousand downloads total - 1 maintainer
GCSscore 1.16.0 removed
GCSscore: an R package for microarray analysis for Affymetrix/Thermo Fisher arrays2 versions - Latest release: over 2 years ago - 4.11 thousand downloads total - 1 maintainer
Related Keywords
Software
72
Microarray
58
Preprocessing
34
TwoChannel
31
DifferentialExpression
29
QualityControl
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GeneExpression
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DataImport
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ImmunoOncology
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MultipleComparison
12
Proteomics
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Normalization
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Transcription
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Visualization
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Sequencing
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RNASeq
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GeneSetEnrichment
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Clustering
7
BatchEffect
7
ProprietaryPlatforms
7
Regression
7
Pathways
6
Bayesian
6
r
6
ExonArray
6
bioconductor
6
mRNAMicroarray
6
SystemsBiology
5
ReportWriting
5
Genetics
5
DNAMethylation
5
TimeCourse
5
MassSpectrometry
5
BiomedicalInformatics
4
MethylationArray
4
Epigenetics
4
DifferentialSplicing
4
AlternativeSplicing
4
Annotation
4
GO
4
Coverage
4
MultiChannel
4
SingleCell
4
FunctionalGenomics
3
Metabolomics
3
Classification
3
SNP
3
GUI
3
CopyNumberVariation
3
bioinformatics
3
MicroRNAArray
3
DifferentialMethylation
3
rstats
3
Infrastructure
3
DNASeq
2
AgilentChip
2
proteomics
2
package
2
FlowCytometry
2
Transcriptomics
2
genomics
2
genomics-visualization
2
Cheminformatics
2
CellBiology
2
Network
2
single-cell
2
shiny
2
shinydashboard
1
bioimaging
1
imaging-mass-cytometry
1
spatial-analysis
1
CpGIsland
1
proteomics-data
1
normalisation
1
data-science
1
GeneticVariability
1
post-translational-modification
1
mass-spectrometry
1
ChipOnChip
1
HTA2.0
1
Spatial
1
imaging
1
visualization
1
Survival
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ChIPSeq
1
MethylSeq
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data-visualization
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genome
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plotting-in-r
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TissueMicroarray
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ncbi-geo
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u24ca289073
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SAGE
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