Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "OneChannel" keyword
SNAGEE 1.42.0
Signal-to-Noise applied to Gene Expression Experiments3 versions - Latest release: 6 months ago - 18.3 thousand downloads total - 1 maintainer
Top 8.9% on bioconductor.org
3 versions - Latest release: 6 months ago - 1 dependent package - 39.6 thousand downloads total - 1 maintainer
altcdfenvs 2.64.0
alternative CDF environments (aka probeset mappings)3 versions - Latest release: 6 months ago - 1 dependent package - 39.6 thousand downloads total - 1 maintainer
Top 2.9% on bioconductor.org
3 versions - Latest release: 18 days ago - 8 dependent packages - 85.8 thousand downloads total - 287 stars on GitHub - 1 maintainer
karyoploteR 1.30.0
Plot customizable linear genomes displaying arbitrary data3 versions - Latest release: 18 days ago - 8 dependent packages - 85.8 thousand downloads total - 287 stars on GitHub - 1 maintainer
crossmeta 1.28.0
Cross Platform Meta-Analysis of Microarray Data3 versions - Latest release: 6 months ago - 1 dependent package - 15.8 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 7.0% on bioconductor.org
3 versions - Latest release: 6 months ago - 35.2 thousand downloads total - 1 maintainer
SCAN.UPC 2.44.0
Single-channel array normalization (SCAN) and Universal exPression Codes (UPC)3 versions - Latest release: 6 months ago - 35.2 thousand downloads total - 1 maintainer
Top 8.9% on bioconductor.org
3 versions - Latest release: 6 months ago - 33 thousand downloads total - 1 maintainer
copa 1.70.0
Functions to perform cancer outlier profile analysis.3 versions - Latest release: 6 months ago - 33 thousand downloads total - 1 maintainer
Top 7.4% on bioconductor.org
3 versions - Latest release: 6 months ago - 31.9 thousand downloads total - 1 maintainer
RefPlus 1.72.0
A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.3 versions - Latest release: 6 months ago - 31.9 thousand downloads total - 1 maintainer
lmdme 1.44.0
Linear Model decomposition for Designed Multivariate Experiments3 versions - Latest release: 6 months ago - 21.4 thousand downloads total - 1 maintainer
CAFE 1.38.0
Chromosmal Aberrations Finder in Expression data3 versions - Latest release: 6 months ago - 17.6 thousand downloads total - 1 maintainer
snm 1.50.0
Supervised Normalization of Microarrays3 versions - Latest release: 6 months ago - 1 dependent package - 35.5 thousand downloads total - 1 maintainer
iChip 1.56.0
Bayesian Modeling of ChIP-chip Data Through Hidden Ising Models3 versions - Latest release: 6 months ago - 24.4 thousand downloads total - 1 maintainer
ExiMiR 2.44.0
R functions for the normalization of Exiqon miRNA array data3 versions - Latest release: 6 months ago - 24.8 thousand downloads total - 1 maintainer
Top 8.4% on bioconductor.org
3 versions - Latest release: 6 months ago - 1 dependent package - 32.2 thousand downloads total - 1 maintainer
gaga 2.48.0
GaGa hierarchical model for high-throughput data analysis3 versions - Latest release: 6 months ago - 1 dependent package - 32.2 thousand downloads total - 1 maintainer
GCSscore 1.16.0 removed
GCSscore: an R package for microarray analysis for Affymetrix/Thermo Fisher arrays2 versions - Latest release: 6 months ago - 4.11 thousand downloads total - 1 maintainer
AMARETTO 1.18.0
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis an...3 versions - Latest release: 6 months ago - 7.55 thousand downloads total - 1 maintainer
Top 9.1% on bioconductor.org
3 versions - Latest release: 6 months ago - 30.3 thousand downloads total - 1 maintainer
Harshlight 1.74.0
A "corrective make-up" program for microarray chips3 versions - Latest release: 6 months ago - 30.3 thousand downloads total - 1 maintainer
cytoKernel 1.8.0
Differential expression using kernel-based score test3 versions - Latest release: 6 months ago - 2.32 thousand downloads total - 0 stars on GitHub - 1 maintainer
PAA 1.36.0
PAA (Protein Array Analyzer)3 versions - Latest release: 6 months ago - 17.6 thousand downloads total - 2 maintainers
pvac 1.50.0
PCA-based gene filtering for Affymetrix arrays3 versions - Latest release: 6 months ago - 23.6 thousand downloads total - 2 maintainers
CopyNumberPlots 1.18.0
Create Copy-Number Plots using karyoploteR functionality3 versions - Latest release: 6 months ago - 2 dependent packages - 9.48 thousand downloads total - 6 stars on GitHub - 1 maintainer
AffyRNADegradation 1.48.0
Analyze and correct probe positional bias in microarray data due to RNA degradation3 versions - Latest release: 6 months ago - 26.3 thousand downloads total - 1 maintainer
clippda 1.52.0
A package for the clinical proteomic profiling data analysis3 versions - Latest release: 6 months ago - 27.7 thousand downloads total - 1 maintainer
Top 9.1% on bioconductor.org
3 versions - Latest release: 6 months ago - 28.4 thousand downloads total - 1 maintainer
lapmix 1.68.0
Laplace Mixture Model in Microarray Experiments3 versions - Latest release: 6 months ago - 28.4 thousand downloads total - 1 maintainer
Top 7.8% on bioconductor.org
3 versions - Latest release: 6 months ago - 47.1 thousand downloads total - 1 maintainer
AgiMicroRna 2.52.0
Processing and Differential Expression Analysis of Agilent microRNA chips3 versions - Latest release: 6 months ago - 47.1 thousand downloads total - 1 maintainer
Top 9.8% on bioconductor.org
4 versions - Latest release: 4 months ago - 1 dependent package - 28 thousand downloads total - 1 maintainer
EGSEA 1.30.1
Ensemble of Gene Set Enrichment Analyses4 versions - Latest release: 4 months ago - 1 dependent package - 28 thousand downloads total - 1 maintainer
Top 9.0% on bioconductor.org
3 versions - Latest release: 6 months ago - 27.6 thousand downloads total - 1 maintainer
RLMM 1.64.0
A Genotype Calling Algorithm for Affymetrix SNP Arrays3 versions - Latest release: 6 months ago - 27.6 thousand downloads total - 1 maintainer
PROMISE 1.54.0
PRojection Onto the Most Interesting Statistical Evidence3 versions - Latest release: 6 months ago - 1 dependent package - 24.9 thousand downloads total - 2 maintainers
iCheck 1.32.0
QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data3 versions - Latest release: 6 months ago - 12.6 thousand downloads total - 1 maintainer
Top 9.9% on bioconductor.org
3 versions - Latest release: 6 months ago - 2 dependent packages - 48 thousand downloads total - 1 maintainer
tilingArray 1.80.0
Transcript mapping with high-density oligonucleotide tiling arrays3 versions - Latest release: 6 months ago - 2 dependent packages - 48 thousand downloads total - 1 maintainer
ABarray 1.70.0
Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1...3 versions - Latest release: 6 months ago - 43.1 thousand downloads total - 1 maintainer
ENmix 1.38.01
Quality control and analysis tools for Illumina DNA methylation BeadChip3 versions - Latest release: 6 months ago - 27.6 thousand downloads total - 1 maintainer
MSstatsLOBD 1.10.0
Assay characterization: estimation of limit of blanc(LoB) and limit of detection(LOD)3 versions - Latest release: 6 months ago - 2.85 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 9.4% on bioconductor.org
3 versions - Latest release: 6 months ago - 28.5 thousand downloads total - 1 maintainer
GeneRegionScan 1.58.0
GeneRegionScan3 versions - Latest release: 6 months ago - 28.5 thousand downloads total - 1 maintainer
Top 7.5% on bioconductor.org
3 versions - Latest release: 6 months ago - 31.1 thousand downloads total - 1 maintainer
webbioc 1.74.0
Bioconductor Web Interface3 versions - Latest release: 6 months ago - 31.1 thousand downloads total - 1 maintainer
TurboNorm 1.50.0
A fast scatterplot smoother suitable for microarray normalization3 versions - Latest release: 6 months ago - 23 thousand downloads total - 1 maintainer
affyILM 1.54.0
Linear Model of background subtraction and the Langmuir isotherm3 versions - Latest release: 6 months ago - 30 thousand downloads total - 1 maintainer
cyanoFilter 1.10.0
Phytoplankton Population Identification using Cell Pigmentation and/or Complexity3 versions - Latest release: 6 months ago - 2.88 thousand downloads total - 0 stars on GitHub - 1 maintainer
MSstatsPTM 2.4.4
Statistical Characterization of Post-translational Modifications5 versions - Latest release: 3 months ago - 2 dependent packages - 7.43 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 1.8% on bioconductor.org
3 versions - Latest release: 16 days ago - 10 dependent packages - 335 thousand downloads total - 1 maintainer
lumi 2.56.0
BeadArray Specific Methods for Illumina Methylation and Expression Microarrays3 versions - Latest release: 16 days ago - 10 dependent packages - 335 thousand downloads total - 1 maintainer
cytomapper 1.16.0
Visualization of highly multiplexed imaging data in R3 versions - Latest release: 7 days ago - 3 dependent packages - 14.1 thousand downloads total - 32 stars on GitHub - 1 maintainer
Top 1.4% on bioconductor.org
3 versions - Latest release: 19 days ago - 47 dependent packages - 1.87 million downloads total - 82 stars on GitHub - 1 maintainer
GEOquery 2.72.0
Get data from NCBI Gene Expression Omnibus (GEO)3 versions - Latest release: 19 days ago - 47 dependent packages - 1.87 million downloads total - 82 stars on GitHub - 1 maintainer
Top 1.7% on bioconductor.org
3 versions - Latest release: 19 days ago - 30 dependent packages - 893 thousand downloads total - 1 maintainer
vsn 3.72.0
Variance stabilization and calibration for microarray data3 versions - Latest release: 19 days ago - 30 dependent packages - 893 thousand downloads total - 1 maintainer
Top 0.3% on bioconductor.org
4 versions - Latest release: 19 days ago - 322 dependent packages - 5.09 million downloads total - 1 maintainer
limma 3.60.0
Linear Models for Microarray Data4 versions - Latest release: 19 days ago - 322 dependent packages - 5.09 million downloads total - 1 maintainer
Top 0.9% on bioconductor.org
3 versions - Latest release: 19 days ago - 74 dependent packages - 1.85 million downloads total - 1 maintainer
affy 1.82.0
Methods for Affymetrix Oligonucleotide Arrays3 versions - Latest release: 19 days ago - 74 dependent packages - 1.85 million downloads total - 1 maintainer
MSstatsLiP 1.10.0
LiP Significance Analysis in shotgun mass spectrometry-based proteomic experiments5 versions - Latest release: 8 days ago - 2.64 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 9.1% on bioconductor.org
3 versions - Latest release: 8 days ago - 1 dependent package - 33.6 thousand downloads total - 0 stars on GitHub - 2 maintainers
codelink 1.72.0
Manipulation of Codelink microarray data3 versions - Latest release: 8 days ago - 1 dependent package - 33.6 thousand downloads total - 0 stars on GitHub - 2 maintainers
MSstatsShiny 1.6.0
MSstats GUI for Statistical Anaylsis of Proteomics Experiments6 versions - Latest release: 10 days ago - 2.75 thousand downloads total - 9 stars on GitHub - 1 maintainer
Top 4.5% on bioconductor.org
3 versions - Latest release: 12 days ago - 1 dependent package - 131 thousand downloads total - 1 maintainer
ArrayExpress 1.64.0
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures:...3 versions - Latest release: 12 days ago - 1 dependent package - 131 thousand downloads total - 1 maintainer
Top 3.8% on bioconductor.org
3 versions - Latest release: 12 days ago - 3 dependent packages - 324 thousand downloads total - 1 stars on GitHub - 1 maintainer
aroma.light 3.34.0
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Da...3 versions - Latest release: 12 days ago - 3 dependent packages - 324 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 3.3% on bioconductor.org
4 versions - Latest release: 12 days ago - 2 dependent packages - 135 thousand downloads total - 1 maintainer
DMRcate 3.0.0
Methylation array and sequencing spatial analysis methods4 versions - Latest release: 12 days ago - 2 dependent packages - 135 thousand downloads total - 1 maintainer
Top 5.3% on bioconductor.org
3 versions - Latest release: 13 days ago - 1 dependent package - 46.1 thousand downloads total - 1 maintainer
puma 3.46.0
Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and ex...3 versions - Latest release: 13 days ago - 1 dependent package - 46.1 thousand downloads total - 1 maintainer
Top 2.7% on bioconductor.org
3 versions - Latest release: 13 days ago - 2 dependent packages - 119 thousand downloads total - 1 maintainer
affycoretools 1.76.0
Functions useful for those doing repetitive analyses with Affymetrix GeneChips3 versions - Latest release: 13 days ago - 2 dependent packages - 119 thousand downloads total - 1 maintainer
Top 4.1% on bioconductor.org
3 versions - Latest release: 13 days ago - 1 dependent package - 75.9 thousand downloads total - 1 maintainer
makecdfenv 1.80.0
CDF Environment Maker3 versions - Latest release: 13 days ago - 1 dependent package - 75.9 thousand downloads total - 1 maintainer
Top 4.8% on bioconductor.org
3 versions - Latest release: 13 days ago - 66 thousand downloads total - 1 maintainer
affylmGUI 1.78.0
GUI for limma Package with Affymetrix Microarrays3 versions - Latest release: 13 days ago - 66 thousand downloads total - 1 maintainer
Top 3.2% on bioconductor.org
3 versions - Latest release: 13 days ago - 11 dependent packages - 368 thousand downloads total - 1 maintainer
oligo 1.68.0
Preprocessing tools for oligonucleotide arrays3 versions - Latest release: 13 days ago - 11 dependent packages - 368 thousand downloads total - 1 maintainer
Top 3.2% on bioconductor.org
3 versions - Latest release: 13 days ago - 5 dependent packages - 196 thousand downloads total - 1 maintainer
beadarray 2.54.0
Quality assessment and low-level analysis for Illumina BeadArray data3 versions - Latest release: 13 days ago - 5 dependent packages - 196 thousand downloads total - 1 maintainer
Top 2.7% on bioconductor.org
3 versions - Latest release: 13 days ago - 6 dependent packages - 220 thousand downloads total - 1 maintainer
globaltest 5.58.0
Testing Groups of Covariates/Features for Association with a Response Variable, with Applications...3 versions - Latest release: 13 days ago - 6 dependent packages - 220 thousand downloads total - 1 maintainer
Top 4.0% on bioconductor.org
3 versions - Latest release: 13 days ago - 98.3 thousand downloads total - 1 maintainer
GlobalAncova 4.22.0
Global test for groups of variables via model comparisons3 versions - Latest release: 13 days ago - 98.3 thousand downloads total - 1 maintainer
Top 4.3% on bioconductor.org
3 versions - Latest release: 13 days ago - 58.2 thousand downloads total - 1 maintainer
affycomp 1.80.0
Graphics Toolbox for Assessment of Affymetrix Expression Measures3 versions - Latest release: 13 days ago - 58.2 thousand downloads total - 1 maintainer
Top 4.3% on bioconductor.org
3 versions - Latest release: 13 days ago - 181 thousand downloads total - 1 stars on GitHub - 1 maintainer
arrayQualityMetrics 3.60.0
Quality metrics report for microarray data sets3 versions - Latest release: 13 days ago - 181 thousand downloads total - 1 stars on GitHub - 1 maintainer
affxparser 1.76.0
Affymetrix File Parsing SDK3 versions - Latest release: 20 days ago - 10 dependent packages - 323 thousand downloads total - 6 stars on GitHub - 1 maintainer
EWCE 1.12.0
Expression Weighted Celltype Enrichment4 versions - Latest release: 20 days ago - 8.86 thousand downloads total - 51 stars on GitHub - 1 maintainer
Top 3.0% on bioconductor.org
3 versions - Latest release: 20 days ago - 4 dependent packages - 171 thousand downloads total - 5 stars on GitHub - 1 maintainer
gage 2.54.0
Generally Applicable Gene-set Enrichment for Pathway Analysis3 versions - Latest release: 20 days ago - 4 dependent packages - 171 thousand downloads total - 5 stars on GitHub - 1 maintainer
roastgsa 1.0.0
Rotation based gene set analysis1 version - Latest release: 7 months ago - 569 downloads total - 0 stars on GitHub - 1 maintainer
Top 2.9% on bioconductor.org
2 versions - Latest release: 7 months ago - 9 dependent packages - 616 thousand downloads total - 1 maintainer
gcrma 2.74.0
Background Adjustment Using Sequence Information2 versions - Latest release: 7 months ago - 9 dependent packages - 616 thousand downloads total - 1 maintainer
Top 6.4% on bioconductor.org
2 versions - Latest release: 7 months ago - 2 dependent packages - 375 thousand downloads total - 1 maintainer
annaffy 1.74.0
Annotation tools for Affymetrix biological metadata2 versions - Latest release: 7 months ago - 2 dependent packages - 375 thousand downloads total - 1 maintainer
annmap 1.44.0
Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.2 versions - Latest release: 6 months ago - 18.8 thousand downloads total - 0 stars on GitHub - 1 maintainer
protGear 1.6.0
Protein Micro Array Data Management and Interactive Visualization2 versions - Latest release: 7 months ago - 1.98 thousand downloads total - 1 stars on GitHub - 1 maintainer
affyPLM 1.78.0
Methods for fitting probe-level models2 versions - Latest release: 6 months ago - 9 dependent packages - 568 thousand downloads total - 0 stars on GitHub - 1 maintainer
diffcoexp 1.22.0
Differential Co-expression Analysis2 versions - Latest release: 6 months ago - 10.4 thousand downloads total - 15 stars on GitHub - 1 maintainer
cytoviewer 1.2.0
An interactive multi-channel image viewer for R2 versions - Latest release: 7 months ago - 1.7 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 6.5% on bioconductor.org
2 versions - Latest release: 6 months ago - 2 dependent packages - 38.8 thousand downloads total - 1 maintainer
PADOG 1.44.0
Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)2 versions - Latest release: 6 months ago - 2 dependent packages - 38.8 thousand downloads total - 1 maintainer
Related Keywords
Software
72
Microarray
58
Preprocessing
34
TwoChannel
31
DifferentialExpression
29
QualityControl
21
GeneExpression
20
DataImport
19
ImmunoOncology
15
MultipleComparison
12
Normalization
12
Proteomics
12
Transcription
11
Sequencing
9
Visualization
9
RNASeq
8
Clustering
7
GeneSetEnrichment
7
BatchEffect
7
ProprietaryPlatforms
7
Regression
7
Pathways
6
bioconductor
6
Bayesian
6
r
6
ExonArray
6
mRNAMicroarray
6
MassSpectrometry
5
TimeCourse
5
DNAMethylation
5
ReportWriting
5
SystemsBiology
5
Genetics
5
Epigenetics
4
MethylationArray
4
DifferentialSplicing
4
BiomedicalInformatics
4
SingleCell
4
GO
4
AlternativeSplicing
4
MultiChannel
4
Coverage
4
Annotation
4
Infrastructure
3
FunctionalGenomics
3
rstats
3
GUI
3
bioinformatics
3
CopyNumberVariation
3
SNP
3
MicroRNAArray
3
DifferentialMethylation
3
Metabolomics
3
Classification
3
package
2
Transcriptomics
2
DNASeq
2
genomics
2
proteomics
2
Cheminformatics
2
genomics-visualization
2
FlowCytometry
2
CellBiology
2
shiny
2
Network
2
single-cell
2
AgilentChip
2
ShinyApps
1
ncbi-geo
1
data-science
1
ChIPchip
1
visualization
1
imaging
1
Spatial
1
shinydashboard
1
proteomics-data
1
normalisation
1
microarray-data
1
background-correction
1
Survival
1
transcriptomics
1
single-cell-rna-seq
1
deconvolution
1
Bioinformatics
1
HTA2.0
1
ChipOnChip
1
WholeGenome
1
GenomeAnnotation
1
GeneRegulation
1
ExperimentData
1
Cancer
1
TissueMicroarray
1
StatisticalMethod
1
plotting-in-r
1
genome
1
bioconductor-package
1
copy-number-variation
1
data-visualization
1
r-package
1
GeneSignaling
1