bioconductor.org "OneChannel" keyword
View the packages on the bioconductor.org package registry that are tagged with the "OneChannel" keyword.
Top 1.8% on bioconductor.org
5 versions - Latest release: 3 months ago - 10 dependent packages - 365 thousand downloads total - 1 maintainer
lumi 2.60.0
BeadArray Specific Methods for Illumina Methylation and Expression Microarrays5 versions - Latest release: 3 months ago - 10 dependent packages - 365 thousand downloads total - 1 maintainer
Top 0.9% on bioconductor.org
5 versions - Latest release: 3 months ago - 74 dependent packages - 2.02 million downloads total - 1 maintainer
affy 1.86.0
Methods for Affymetrix Oligonucleotide Arrays5 versions - Latest release: 3 months ago - 74 dependent packages - 2.02 million downloads total - 1 maintainer
Top 0.3% on bioconductor.org
14 versions - Latest release: 2 months ago - 322 dependent packages - 5.97 million downloads total - 1 maintainer
limma 3.64.1
Linear Models for Microarray and Omics Data14 versions - Latest release: 2 months ago - 322 dependent packages - 5.97 million downloads total - 1 maintainer
Top 1.7% on bioconductor.org
5 versions - Latest release: 3 months ago - 30 dependent packages - 1 million downloads total - 1 maintainer
vsn 3.76.0
Variance stabilization and calibration for microarray data5 versions - Latest release: 3 months ago - 30 dependent packages - 1 million downloads total - 1 maintainer
Top 9.0% on bioconductor.org
5 versions - Latest release: 2 months ago - 32 thousand downloads total - 1 maintainer
RLMM 1.70.0
A Genotype Calling Algorithm for Affymetrix SNP Arrays5 versions - Latest release: 2 months ago - 32 thousand downloads total - 1 maintainer
affyPLM 1.84.0
Methods for fitting probe-level models5 versions - Latest release: 3 months ago - 9 dependent packages - 592 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 1.4% on bioconductor.org
5 versions - Latest release: 3 months ago - 47 dependent packages - 2.09 million downloads total - 98 stars on GitHub - 1 maintainer
GEOquery 2.76.0
Get data from NCBI Gene Expression Omnibus (GEO)5 versions - Latest release: 3 months ago - 47 dependent packages - 2.09 million downloads total - 98 stars on GitHub - 1 maintainer
Top 3.3% on bioconductor.org
12 versions - Latest release: 3 months ago - 2 dependent packages - 166 thousand downloads total - 1 maintainer
DMRcate 3.4.0
Methylation array and sequencing spatial analysis methods12 versions - Latest release: 3 months ago - 2 dependent packages - 166 thousand downloads total - 1 maintainer
Top 2.7% on bioconductor.org
5 versions - Latest release: 2 months ago - 2 dependent packages - 131 thousand downloads total - 1 maintainer
affycoretools 1.80.0
Functions useful for those doing repetitive analyses with Affymetrix GeneChips5 versions - Latest release: 2 months ago - 2 dependent packages - 131 thousand downloads total - 1 maintainer
Top 6.4% on bioconductor.org
5 versions - Latest release: 2 months ago - 2 dependent packages - 386 thousand downloads total - 1 maintainer
annaffy 1.80.0
Annotation tools for Affymetrix biological metadata5 versions - Latest release: 2 months ago - 2 dependent packages - 386 thousand downloads total - 1 maintainer
Top 3.2% on bioconductor.org
7 versions - Latest release: 2 months ago - 11 dependent packages - 437 thousand downloads total - 3 stars on GitHub - 1 maintainer
oligo 1.72.0
Preprocessing tools for oligonucleotide arrays7 versions - Latest release: 2 months ago - 11 dependent packages - 437 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 2.9% on bioconductor.org
6 versions - Latest release: 21 days ago - 8 dependent packages - 106 thousand downloads total - 318 stars on GitHub - 1 maintainer
karyoploteR 1.34.2
Plot customizable linear genomes displaying arbitrary data6 versions - Latest release: 21 days ago - 8 dependent packages - 106 thousand downloads total - 318 stars on GitHub - 1 maintainer
Top 3.8% on bioconductor.org
5 versions - Latest release: 2 months ago - 3 dependent packages - 364 thousand downloads total - 1 stars on GitHub - 1 maintainer
aroma.light 3.38.0
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Da...5 versions - Latest release: 2 months ago - 3 dependent packages - 364 thousand downloads total - 1 stars on GitHub - 1 maintainer
cytomapper 1.20.0
Visualization of highly multiplexed imaging data in R5 versions - Latest release: 3 months ago - 3 dependent packages - 24.3 thousand downloads total - 32 stars on GitHub - 1 maintainer
CopyNumberPlots 1.24.0
Create Copy-Number Plots using karyoploteR functionality6 versions - Latest release: about 2 months ago - 2 dependent packages - 13.9 thousand downloads total - 6 stars on GitHub - 1 maintainer
protGear 1.12.0
Protein Micro Array Data Management and Interactive Visualization5 versions - Latest release: 3 months ago - 7.62 thousand downloads total - 1 stars on GitHub - 1 maintainer
diffcoexp 1.28.0
Differential Co-expression Analysis5 versions - Latest release: 2 months ago - 16.1 thousand downloads total - 15 stars on GitHub - 1 maintainer
affxparser 1.80.0
Affymetrix File Parsing SDK5 versions - Latest release: 3 months ago - 10 dependent packages - 358 thousand downloads total - 8 stars on GitHub - 1 maintainer
cyanoFilter 1.16.0
Phytoplankton Population Identification using Cell Pigmentation and/or Complexity5 versions - Latest release: 3 months ago - 8.48 thousand downloads total - 0 stars on GitHub - 1 maintainer
annmap 1.50.0
Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.5 versions - Latest release: 3 months ago - 25.2 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 9.1% on bioconductor.org
5 versions - Latest release: 3 months ago - 36.2 thousand downloads total - 1 maintainer
Harshlight 1.79.0
A "corrective make-up" program for microarray chips5 versions - Latest release: 3 months ago - 36.2 thousand downloads total - 1 maintainer
cytoviewer 1.8.0
An interactive multi-channel image viewer for R5 versions - Latest release: 3 months ago - 5.97 thousand downloads total - 7 stars on GitHub - 1 maintainer
pvac 1.56.0
PCA-based gene filtering for Affymetrix arrays5 versions - Latest release: 3 months ago - 28.5 thousand downloads total - 2 maintainers
MSstatsShiny 1.10.0
MSstats GUI for Statistical Anaylsis of Proteomics Experiments9 versions - Latest release: 3 months ago - 7.08 thousand downloads total - 9 stars on GitHub - 1 maintainer
Top 8.9% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 46.5 thousand downloads total - 1 maintainer
altcdfenvs 2.70.0
alternative CDF environments (aka probeset mappings)5 versions - Latest release: 3 months ago - 1 dependent package - 46.5 thousand downloads total - 1 maintainer
Top 2.9% on bioconductor.org
5 versions - Latest release: 3 months ago - 9 dependent packages - 641 thousand downloads total - 1 maintainer
gcrma 2.80.0
Background Adjustment Using Sequence Information5 versions - Latest release: 3 months ago - 9 dependent packages - 641 thousand downloads total - 1 maintainer
MSstatsPTM 2.10.0
Statistical Characterization of Post-translational Modifications9 versions - Latest release: 3 months ago - 2 dependent packages - 12.9 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 4.1% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 84.6 thousand downloads total - 1 maintainer
makecdfenv 1.84.0
CDF Environment Maker5 versions - Latest release: 3 months ago - 1 dependent package - 84.6 thousand downloads total - 1 maintainer
cytoKernel 1.14.0
Differential expression using kernel-based score test5 versions - Latest release: 3 months ago - 6.11 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 4.3% on bioconductor.org
5 versions - Latest release: 3 months ago - 195 thousand downloads total - 1 stars on GitHub - 1 maintainer
arrayQualityMetrics 3.64.0
Quality metrics report for microarray data sets5 versions - Latest release: 3 months ago - 195 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 9.9% on bioconductor.org
5 versions - Latest release: 3 months ago - 2 dependent packages - 55.5 thousand downloads total - 1 maintainer
tilingArray 1.86.0
Transcript mapping with high-density oligonucleotide tiling arrays5 versions - Latest release: 3 months ago - 2 dependent packages - 55.5 thousand downloads total - 1 maintainer
Top 9.4% on bioconductor.org
5 versions - Latest release: 3 months ago - 34 thousand downloads total - 1 maintainer
GeneRegionScan 1.64.0
GeneRegionScan5 versions - Latest release: 3 months ago - 34 thousand downloads total - 1 maintainer
Top 4.3% on bioconductor.org
5 versions - Latest release: 3 months ago - 66 thousand downloads total - 1 maintainer
affycomp 1.84.0
Graphics Toolbox for Assessment of Affymetrix Expression Measures5 versions - Latest release: 3 months ago - 66 thousand downloads total - 1 maintainer
Top 8.4% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 37.3 thousand downloads total - 1 maintainer
gaga 2.54.0
GaGa hierarchical model for high-throughput data analysis5 versions - Latest release: 3 months ago - 1 dependent package - 37.3 thousand downloads total - 1 maintainer
AMARETTO 1.24.0
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis an...5 versions - Latest release: 3 months ago - 14.2 thousand downloads total - 1 maintainer
ABarray 1.76.0
Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1...5 versions - Latest release: 3 months ago - 49.9 thousand downloads total - 1 maintainer
AffyRNADegradation 1.54.0
Analyze and correct probe positional bias in microarray data due to RNA degradation5 versions - Latest release: 3 months ago - 32.8 thousand downloads total - 1 maintainer
Top 7.5% on bioconductor.org
5 versions - Latest release: 3 months ago - 37.7 thousand downloads total - 1 maintainer
webbioc 1.80.0
Bioconductor Web Interface5 versions - Latest release: 3 months ago - 37.7 thousand downloads total - 1 maintainer
crossmeta 1.34.0
Cross Platform Meta-Analysis of Microarray Data5 versions - Latest release: 3 months ago - 1 dependent package - 18.8 thousand downloads total - 3 stars on GitHub - 1 maintainer
MSstatsLOBD 1.16.0
Assay characterization: estimation of limit of blanc(LoB) and limit of detection(LOD)5 versions - Latest release: 3 months ago - 5.97 thousand downloads total - 0 stars on GitHub - 1 maintainer
affyILM 1.60.0
Linear Model of background subtraction and the Langmuir isotherm5 versions - Latest release: 3 months ago - 36.5 thousand downloads total - 1 maintainer
Top 9.8% on bioconductor.org
6 versions - Latest release: 3 months ago - 1 dependent package - 34.5 thousand downloads total - 1 maintainer
EGSEA 1.36.0
Ensemble of Gene Set Enrichment Analyses6 versions - Latest release: 3 months ago - 1 dependent package - 34.5 thousand downloads total - 1 maintainer
TurboNorm 1.56.0
A fast scatterplot smoother suitable for microarray normalization5 versions - Latest release: 3 months ago - 27.7 thousand downloads total - 1 maintainer
Top 8.9% on bioconductor.org
5 versions - Latest release: 3 months ago - 37.9 thousand downloads total - 1 maintainer
copa 1.76.0
Functions to perform cancer outlier profile analysis.5 versions - Latest release: 3 months ago - 37.9 thousand downloads total - 1 maintainer
clippda 1.58.0
A package for the clinical proteomic profiling data analysis5 versions - Latest release: 3 months ago - 32.4 thousand downloads total - 1 maintainer
Top 7.0% on bioconductor.org
5 versions - Latest release: 3 months ago - 39.9 thousand downloads total - 1 maintainer
SCAN.UPC 2.50.0
Single-channel array normalization (SCAN) and Universal exPression Codes (UPC)5 versions - Latest release: 3 months ago - 39.9 thousand downloads total - 1 maintainer
ENmix 1.44.1
Quality control and analysis tools for Illumina DNA methylation BeadChip8 versions - Latest release: about 2 months ago - 37.6 thousand downloads total - 1 maintainer
Top 4.0% on bioconductor.org
5 versions - Latest release: 3 months ago - 124 thousand downloads total - 1 maintainer
GlobalAncova 4.26.0
Global test for groups of variables via model comparisons5 versions - Latest release: 3 months ago - 124 thousand downloads total - 1 maintainer
Top 7.8% on bioconductor.org
5 versions - Latest release: 3 months ago - 55.1 thousand downloads total - 1 maintainer
AgiMicroRna 2.58.0
Processing and Differential Expression Analysis of Agilent microRNA chips5 versions - Latest release: 3 months ago - 55.1 thousand downloads total - 1 maintainer
MSstatsLiP 1.14.1
LiP Significance Analysis in shotgun mass spectrometry-based proteomic experiments8 versions - Latest release: 29 days ago - 6.46 thousand downloads total - 3 stars on GitHub - 1 maintainer
snm 1.56.0
Supervised Normalization of Microarrays5 versions - Latest release: 3 months ago - 1 dependent package - 40.6 thousand downloads total - 1 maintainer
PROMISE 1.60.0
PRojection Onto the Most Interesting Statistical Evidence5 versions - Latest release: 3 months ago - 1 dependent package - 29.5 thousand downloads total - 2 maintainers
Top 9.1% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 39.7 thousand downloads total - 0 stars on GitHub - 2 maintainers
codelink 1.76.0
Manipulation of Codelink microarray data5 versions - Latest release: 3 months ago - 1 dependent package - 39.7 thousand downloads total - 0 stars on GitHub - 2 maintainers
Top 4.8% on bioconductor.org
5 versions - Latest release: 3 months ago - 73.6 thousand downloads total - 1 maintainer
affylmGUI 1.82.0
GUI for limma Package with Affymetrix Microarrays5 versions - Latest release: 3 months ago - 73.6 thousand downloads total - 1 maintainer
SNAGEE 1.48.0
Signal-to-Noise applied to Gene Expression Experiments5 versions - Latest release: 3 months ago - 22.8 thousand downloads total - 1 maintainer
lmdme 1.50.0
Linear Model decomposition for Designed Multivariate Experiments5 versions - Latest release: 3 months ago - 25.7 thousand downloads total - 1 maintainer
Top 6.5% on bioconductor.org
5 versions - Latest release: 3 months ago - 2 dependent packages - 46.9 thousand downloads total - 1 maintainer
PADOG 1.50.0
Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)5 versions - Latest release: 3 months ago - 2 dependent packages - 46.9 thousand downloads total - 1 maintainer
iChip 1.62.0
Bayesian Modeling of ChIP-chip Data Through Hidden Ising Models5 versions - Latest release: 3 months ago - 29.3 thousand downloads total - 1 maintainer
ExiMiR 2.50.0
R functions for the normalization of Exiqon miRNA array data5 versions - Latest release: 3 months ago - 29.9 thousand downloads total - 1 maintainer
CAFE 1.44.0
Chromosmal Aberrations Finder in Expression data5 versions - Latest release: 3 months ago - 22.3 thousand downloads total - 1 maintainer
Top 9.1% on bioconductor.org
5 versions - Latest release: 3 months ago - 31.8 thousand downloads total - 1 maintainer
lapmix 1.74.0
Laplace Mixture Model in Microarray Experiments5 versions - Latest release: 3 months ago - 31.8 thousand downloads total - 1 maintainer
iCheck 1.38.0
QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data5 versions - Latest release: 3 months ago - 16.7 thousand downloads total - 1 maintainer
PAA 1.42.0
PAA (Protein Array Analyzer)5 versions - Latest release: 3 months ago - 22.3 thousand downloads total - 2 maintainers
Top 5.3% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 52.3 thousand downloads total - 1 maintainer
puma 3.50.0
Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and ex...5 versions - Latest release: 3 months ago - 1 dependent package - 52.3 thousand downloads total - 1 maintainer
Top 2.7% on bioconductor.org
5 versions - Latest release: 3 months ago - 6 dependent packages - 255 thousand downloads total - 1 maintainer
globaltest 5.62.0
Testing Groups of Covariates/Features for Association with a Response Variable, with Applications...5 versions - Latest release: 3 months ago - 6 dependent packages - 255 thousand downloads total - 1 maintainer
Top 3.0% on bioconductor.org
5 versions - Latest release: 3 months ago - 4 dependent packages - 191 thousand downloads total - 5 stars on GitHub - 1 maintainer
gage 2.58.0
Generally Applicable Gene-set Enrichment for Pathway Analysis5 versions - Latest release: 3 months ago - 4 dependent packages - 191 thousand downloads total - 5 stars on GitHub - 1 maintainer
roastgsa 1.6.0
Rotation based gene set analysis4 versions - Latest release: 3 months ago - 3.81 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 4.5% on bioconductor.org
6 versions - Latest release: about 1 month ago - 1 dependent package - 142 thousand downloads total - 1 maintainer
ArrayExpress 1.68.0
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures:...6 versions - Latest release: about 1 month ago - 1 dependent package - 142 thousand downloads total - 1 maintainer
EWCE 1.16.0
Expression Weighted Celltype Enrichment6 versions - Latest release: 2 months ago - 15.6 thousand downloads total - 53 stars on GitHub - 1 maintainer
Top 3.2% on bioconductor.org
5 versions - Latest release: 3 months ago - 5 dependent packages - 212 thousand downloads total - 1 maintainer
beadarray 2.58.0
Quality assessment and low-level analysis for Illumina BeadArray data5 versions - Latest release: 3 months ago - 5 dependent packages - 212 thousand downloads total - 1 maintainer
Top 7.4% on bioconductor.org
3 versions - Latest release: about 1 year ago - 32.9 thousand downloads total - 1 maintainer
RefPlus 1.74.0 removed
A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.3 versions - Latest release: about 1 year ago - 32.9 thousand downloads total - 1 maintainer
GCSscore 1.16.0 removed
GCSscore: an R package for microarray analysis for Affymetrix/Thermo Fisher arrays2 versions - Latest release: over 1 year ago - 4.11 thousand downloads total - 1 maintainer
Related Keywords
Software
72
Microarray
58
Preprocessing
34
TwoChannel
31
DifferentialExpression
29
QualityControl
21
GeneExpression
20
DataImport
19
ImmunoOncology
15
Proteomics
12
Normalization
12
MultipleComparison
12
Transcription
11
Visualization
9
Sequencing
9
RNASeq
8
ProprietaryPlatforms
7
BatchEffect
7
GeneSetEnrichment
7
Regression
7
Clustering
7
r
6
ExonArray
6
Bayesian
6
bioconductor
6
Pathways
6
mRNAMicroarray
6
SystemsBiology
5
TimeCourse
5
Genetics
5
ReportWriting
5
MassSpectrometry
5
DNAMethylation
5
GO
4
Annotation
4
MethylationArray
4
Coverage
4
MultiChannel
4
SingleCell
4
Epigenetics
4
DifferentialSplicing
4
BiomedicalInformatics
4
AlternativeSplicing
4
Infrastructure
3
CopyNumberVariation
3
GUI
3
Classification
3
DifferentialMethylation
3
FunctionalGenomics
3
Metabolomics
3
MicroRNAArray
3
SNP
3
bioinformatics
3
rstats
3
genomics
2
Cheminformatics
2
proteomics
2
DNASeq
2
CellBiology
2
single-cell
2
FlowCytometry
2
Network
2
genomics-visualization
2
AgilentChip
2
Transcriptomics
2
shiny
2
package
2
mass-spectrometry
1
GeneSignaling
1
GeneTarget
1
GraphAndNetwork
1
TissueMicroarray
1
StatisticalMethod
1
GeneRegulation
1
post-translational-modification
1
KEGG
1
NetworkEnrichment
1
CpGIsland
1
PrincipalComponent
1
transcriptomics
1
single-cell-rna-seq
1
Cancer
1
ExperimentData
1
ChIPchip
1
ChipOnChip
1
deconvolution
1
HTA2.0
1
Bioinformatics
1
Survival
1
GenomeAnnotation
1
ncbi-geo
1
WholeGenome
1
data-science
1
SAGE
1
ChIPSeq
1
MethylSeq
1
GeneticVariability
1
data-visualization
1
genome
1
plotting-in-r
1