bioconductor.org "PrincipalComponent" keyword
View the packages on the bioconductor.org package registry that are tagged with the "PrincipalComponent" keyword.
Top 0.5% on bioconductor.org
7 versions - Latest release: 3 months ago - 146 dependent packages - 3.33 million downloads total - 330 stars on GitHub - 1 maintainer
DESeq2 1.48.1
Differential gene expression analysis based on the negative binomial distribution7 versions - Latest release: 3 months ago - 146 dependent packages - 3.33 million downloads total - 330 stars on GitHub - 1 maintainer
scPCA 1.22.0
Sparse Contrastive Principal Component Analysis5 versions - Latest release: 3 months ago - 11.6 thousand downloads total - 12 stars on GitHub - 1 maintainer
autonomics 1.16.0
Unified Statistical Modeling of Omics Data8 versions - Latest release: 3 months ago - 7.74 thousand downloads total - 3 stars on GitHub - 1 maintainer
Harman 1.36.0
The removal of batch effects from datasets using a PCA and constrained optimisation based technique5 versions - Latest release: 3 months ago - 1 dependent package - 26.5 thousand downloads total - 1 maintainer
missRows 1.28.0
Handling Missing Individuals in Multi-Omics Data Integration5 versions - Latest release: 3 months ago - 11.3 thousand downloads total - 1 maintainer
ClustAll 1.4.0
ClustAll: Data driven strategy to robustly identify stratification of patients within complex dis...4 versions - Latest release: 3 months ago - 3.56 thousand downloads total - 1 maintainer
tenXplore 1.30.0
ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics6 versions - Latest release: 3 months ago - 12.2 thousand downloads total - 1 maintainer
PLSDAbatch 1.4.0
PLSDA-batch3 versions - Latest release: 3 months ago - 3.96 thousand downloads total - 13 stars on GitHub - 1 maintainer
STATegRa 1.44.0
Classes and methods for multi-omics data integration5 versions - Latest release: 3 months ago - 20.5 thousand downloads total - 2 maintainers
Top 5.4% on bioconductor.org
5 versions - Latest release: 3 months ago - 2 dependent packages - 60 thousand downloads total - 56 stars on GitHub - 1 maintainer
pcaExplorer 3.2.0
Interactive Visualization of RNA-seq Data Using a Principal Components Approach5 versions - Latest release: 3 months ago - 2 dependent packages - 60 thousand downloads total - 56 stars on GitHub - 1 maintainer
gcatest 2.8.0
Genotype Conditional Association TEST5 versions - Latest release: 2 months ago - 15.4 thousand downloads total - 5 stars on GitHub - 1 maintainer
BatchQC 2.4.0
Batch Effects Quality Control Software5 versions - Latest release: 3 months ago - 26 thousand downloads total - 9 stars on GitHub - 1 maintainer
KBoost 1.16.0
Inference of gene regulatory networks from gene expression data5 versions - Latest release: 3 months ago - 6.21 thousand downloads total - 4 stars on GitHub - 1 maintainer
pathwayPCA 1.24.0
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection5 versions - Latest release: 3 months ago - 1 dependent package - 12.1 thousand downloads total - 11 stars on GitHub - 1 maintainer
Top 4.0% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 83.5 thousand downloads total - 51 stars on GitHub - 1 maintainer
RTCGA 1.38.0
The Cancer Genome Atlas Data Integration5 versions - Latest release: 3 months ago - 1 dependent package - 83.5 thousand downloads total - 51 stars on GitHub - 1 maintainer
PathoStat 1.34.0
PathoStat Statistical Microbiome Analysis Package5 versions - Latest release: 3 months ago - 16.9 thousand downloads total - 8 stars on GitHub - 2 maintainers
COCOA 2.22.0
Coordinate Covariation Analysis5 versions - Latest release: 3 months ago - 11.7 thousand downloads total - 1 maintainer
ENmix 1.44.3
Quality control and analysis tools for Illumina DNA methylation BeadChip9 versions - Latest release: 3 days ago - 38.7 thousand downloads total - 1 maintainer
mogsa 1.42.0
Multiple omics data integrative clustering and gene set analysis5 versions - Latest release: 3 months ago - 26 thousand downloads total - 1 maintainer
esetVis 1.34.0
Visualizations of expressionSet Bioconductor object6 versions - Latest release: 3 months ago - 17.2 thousand downloads total - 1 maintainer
phenopath 1.32.0
Genomic trajectories with heterogeneous genetic and environmental backgrounds5 versions - Latest release: 3 months ago - 1 dependent package - 16.1 thousand downloads total - 1 maintainer
MultiBaC 1.18.0
Multiomic Batch effect Correction5 versions - Latest release: 3 months ago - 10.4 thousand downloads total - 1 maintainer
Top 3.8% on bioconductor.org
5 versions - Latest release: 3 months ago - 9 dependent packages - 111 thousand downloads total - 1 maintainer
ropls 1.40.0
PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics data5 versions - Latest release: 3 months ago - 9 dependent packages - 111 thousand downloads total - 1 maintainer
padma 1.18.1
Individualized Multi-Omic Pathway Deviation Scores Using Multiple Factor Analysis7 versions - Latest release: 2 months ago - 8.06 thousand downloads total - 3 stars on GitHub - 1 maintainer
ramwas 1.32.0
Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms5 versions - Latest release: 3 months ago - 17.2 thousand downloads total - 1 maintainer
ccImpute 1.10.0
ccImpute: an accurate and scalable consensus clustering based approach to impute dropout events i...6 versions - Latest release: 3 months ago - 5.55 thousand downloads total - 2 stars on GitHub - 1 maintainer
rqt 1.34.0
rqt: utilities for gene-level meta-analysis5 versions - Latest release: 3 months ago - 12.1 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 3.9% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 95.9 thousand downloads total - 1 maintainer
made4 1.82.0
Multivariate analysis of microarray data using ADE45 versions - Latest release: 3 months ago - 1 dependent package - 95.9 thousand downloads total - 1 maintainer
scry 1.20.0
Small-Count Analysis Methods for High-Dimensional Data5 versions - Latest release: 3 months ago - 20.8 thousand downloads total - 1 maintainer
corral 1.18.0
Correspondence Analysis for Single Cell Data5 versions - Latest release: 3 months ago - 9.83 thousand downloads total - 1 maintainer
Pigengene 1.34.0
Infers biological signatures from gene expression data5 versions - Latest release: 3 months ago - 1 dependent package - 19.1 thousand downloads total - 1 maintainer
OMICsPCA 1.26.0
An R package for quantitative integration and analysis of multiple omics assays from heterogeneou...5 versions - Latest release: 3 months ago - 11.8 thousand downloads total - 1 maintainer
iNETgrate 1.6.0
Integrates DNA methylation data with gene expression in a single gene network4 versions - Latest release: 3 months ago - 4.52 thousand downloads total - 65 stars on GitHub - 1 maintainer
acde 1.38.0
Artificial Components Detection of Differentially Expressed Genes5 versions - Latest release: 3 months ago - 21.5 thousand downloads total - 1 maintainer
psichomics 1.34.0
Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation6 versions - Latest release: 3 months ago - 19.1 thousand downloads total - 33 stars on GitHub - 1 maintainer
Top 3.2% on bioconductor.org
7 versions - Latest release: 3 months ago - 11 dependent packages - 216 thousand downloads total - 107 stars on GitHub - 1 maintainer
SNPRelate 1.42.0
Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data7 versions - Latest release: 3 months ago - 11 dependent packages - 216 thousand downloads total - 107 stars on GitHub - 1 maintainer
DiscoRhythm 1.24.0
Interactive Workflow for Discovering Rhythmicity in Biological Data5 versions - Latest release: 3 months ago - 11.3 thousand downloads total - 13 stars on GitHub - 1 maintainer
Top 6.9% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 49.6 thousand downloads total - 16 stars on GitHub - 1 maintainer
lfa 2.8.0
Logistic Factor Analysis for Categorical Data5 versions - Latest release: 3 months ago - 1 dependent package - 49.6 thousand downloads total - 16 stars on GitHub - 1 maintainer
limpca 1.4.0
An R package for the linear modeling of high-dimensional designed data based on ASCA/APCA family ...3 versions - Latest release: 3 months ago - 3.24 thousand downloads total - 2 stars on GitHub - 1 maintainer
ChromSCape 1.17.0
Analysis of single-cell epigenomics datasets with a Shiny App5 versions - Latest release: 3 months ago - 7.92 thousand downloads total - 14 stars on GitHub - 1 maintainer
ClusterSignificance 1.36.0
The ClusterSignificance package provides tools to assess if class clusters in dimensionality redu...5 versions - Latest release: 3 months ago - 15.5 thousand downloads total - 0 stars on GitHub - 1 maintainer
MultiRNAflow 1.6.0
An R package for integrated analysis of temporal RNA-seq data with multiple biological conditions4 versions - Latest release: 3 months ago - 4.66 thousand downloads total - 0 stars on GitHub - 1 maintainer
GenomicSuperSignature 1.16.1
Interpretation of RNA-seq experiments through robust, efficient comparison to public databases6 versions - Latest release: 3 months ago - 7.45 thousand downloads total - 12 stars on GitHub - 1 maintainer
Top 4.6% on bioconductor.org
5 versions - Latest release: 3 months ago - 4 dependent packages - 96.4 thousand downloads total - 352 stars on GitHub - 1 maintainer
PCAtools 2.20.0
PCAtools: Everything Principal Components Analysis5 versions - Latest release: 3 months ago - 4 dependent packages - 96.4 thousand downloads total - 352 stars on GitHub - 1 maintainer
squallms 1.2.0
Speedy quality assurance via lasso labeling for LC-MS data2 versions - Latest release: 3 months ago - 2.01 thousand downloads total - 3 stars on GitHub - 1 maintainer
RAIDS 1.6.1
Robust Ancestry Inference using Data Synthesis4 versions - Latest release: 3 months ago - 4.1 thousand downloads total - 5 stars on GitHub - 1 maintainer
AffiXcan 1.26.0
A Functional Approach To Impute Genetically Regulated Expression5 versions - Latest release: 3 months ago - 13.7 thousand downloads total - 1 maintainer
systemPipeTools 1.16.0
Tools for data visualization5 versions - Latest release: 3 months ago - 6.35 thousand downloads total - 1 maintainer
RiboProfiling 1.38.0
Ribosome Profiling Data Analysis: from BAM to Data Representation and Interpretation5 versions - Latest release: 3 months ago - 23 thousand downloads total - 1 maintainer
Top 9.3% on bioconductor.org
5 versions - Latest release: 3 months ago - 28 dependent packages - 1 million downloads total - 8 stars on GitHub - 1 maintainer
BiocSingular 1.24.0
Singular Value Decomposition for Bioconductor Packages5 versions - Latest release: 3 months ago - 28 dependent packages - 1 million downloads total - 8 stars on GitHub - 1 maintainer
vsclust 1.10.0
Feature-based variance-sensitive quantitative clustering5 versions - Latest release: 3 months ago - 5.01 thousand downloads total - 1 maintainer
scrapper 1.2.1
Bindings to C++ Libraries for Single-Cell Analysis5 versions - Latest release: about 2 months ago - 4.19 thousand downloads total - 1 maintainer
phantasus 1.28.0
Visual and interactive gene expression analysis5 versions - Latest release: 3 months ago - 17 thousand downloads total - 1 maintainer
SurfR 1.4.1
Surface Protein Prediction and Identification8 versions - Latest release: 29 days ago - 3.48 thousand downloads total - 0 stars on GitHub - 1 maintainer
POMA 1.18.0
Tools for Omics Data Analysis5 versions - Latest release: 3 months ago - 1 dependent package - 10.6 thousand downloads total - 11 stars on GitHub - 1 maintainer
Top 5.2% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 66.5 thousand downloads total - 38 stars on GitHub - 1 maintainer
GENESIS 2.38.0
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzi...5 versions - Latest release: 3 months ago - 1 dependent package - 66.5 thousand downloads total - 38 stars on GitHub - 1 maintainer
MSstatsSampleSize 1.16.0 removed
Simulation tool for optimal design of high-dimensional MS-based proteomics experiment2 versions - Latest release: over 1 year ago - 3.89 thousand downloads total - 1 maintainer
Related Keywords
Software
57
GeneExpression
23
DimensionReduction
23
RNASeq
21
Visualization
21
Clustering
19
Sequencing
18
Transcriptomics
14
StatisticalMethod
14
ImmunoOncology
14
Normalization
14
DifferentialExpression
13
Transcription
12
Regression
12
QualityControl
11
Classification
11
BatchEffect
11
Preprocessing
11
Microarray
10
SingleCell
9
MultipleComparison
7
DNAMethylation
7
Pathways
7
Proteomics
6
Metabolomics
6
SystemsBiology
6
GUI
5
Survival
5
DataRepresentation
5
GeneSetEnrichment
5
DataImport
5
GraphAndNetwork
5
Epigenetics
5
bioconductor
5
Genetics
4
r
4
FunctionalGenomics
4
GenomeWideAssociation
4
SNP
4
BiomedicalInformatics
4
MassSpectrometry
4
FeatureExtraction
3
Bayesian
3
GenePrediction
3
Lipidomics
3
ATACSeq
3
MethylSeq
3
GeneticVariability
3
r-package
3
TimeCourse
3
ExperimentalDesign
3
ChIPSeq
3
ReportWriting
3
ShinyApps
3
NetworkInference
3
Network
3
GeneRegulation
3
Annotation
2
data-visualization
2
bioconductor-package
2
exploratory-data-analysis
2
bioinformatics
2
Infrastructure
2
BiocViews
2
user-friendly
2
MultidimensionalScaling
2
mRNAMicroarray
2
DecisionTree
2
Coverage
2
DifferentialMethylation
2
MethylationArray
2
Microbiome
2
shiny
2
rna-seq-data
2
GenomicVariation
2
plots
1
inference
1
genomics
1
exome-sequencing
1
cancer-genomics
1
ancestry
1
WholeGenome
1
pipeline
1
transferlearning
1
rna-sequencing-profiles
1
principal-component-analysis
1
omics-data-integration
1
mesh
1
gsea
1
rpackage
1
surface
1
single-cell
1
epigenomics
1
DifferentialPeakCalling
1
machine-learning
1
proteins
1
metaanalysis
1
enrichment-analysis
1
dge
1
GO
1