bioconductor.org "PrincipalComponent" keyword
scPCA 1.24.0
Sparse Contrastive Principal Component Analysis6 versions - Latest release: 4 months ago - 14.6 thousand downloads total - 12 stars on GitHub - 1 maintainer
Top 0.5% on bioconductor.org
11 versions - Latest release: 4 months ago - 146 dependent packages - 4.21 million downloads total - 330 stars on GitHub - 1 maintainer
DESeq2 1.50.2
Differential gene expression analysis based on the negative binomial distribution11 versions - Latest release: 4 months ago - 146 dependent packages - 4.21 million downloads total - 330 stars on GitHub - 1 maintainer
iModMix 1.0.0
Integrative Modules for Multi-Omics Data1 version - Latest release: 4 months ago - 936 downloads total - 2 stars on GitHub - 1 maintainer
scrapper 1.4.0
Bindings to C++ Libraries for Single-Cell Analysis6 versions - Latest release: 3 months ago - 19.1 thousand downloads total - 1 maintainer
Top 5.2% on bioconductor.org
6 versions - Latest release: 4 months ago - 1 dependent package - 83.9 thousand downloads total - 40 stars on GitHub - 1 maintainer
GENESIS 2.40.0
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzi...6 versions - Latest release: 4 months ago - 1 dependent package - 83.9 thousand downloads total - 40 stars on GitHub - 1 maintainer
Harman 1.38.0
The removal of batch effects from datasets using a PCA and constrained optimisation based technique6 versions - Latest release: 3 months ago - 1 dependent package - 31 thousand downloads total - 1 maintainer
Top 9.3% on bioconductor.org
6 versions - Latest release: 3 months ago - 28 dependent packages - 1.38 million downloads total - 8 stars on GitHub - 1 maintainer
BiocSingular 1.26.1
Singular Value Decomposition for Bioconductor Packages6 versions - Latest release: 3 months ago - 28 dependent packages - 1.38 million downloads total - 8 stars on GitHub - 1 maintainer
RAIDS 1.8.0
Robust Ancestry Inference using Data Synthesis5 versions - Latest release: 4 months ago - 5.52 thousand downloads total - 5 stars on GitHub - 1 maintainer
scry 1.22.0
Small-Count Analysis Methods for High-Dimensional Data6 versions - Latest release: 3 months ago - 28.5 thousand downloads total - 1 maintainer
ClusterSignificance 1.38.0
The ClusterSignificance package provides tools to assess if class clusters in dimensionality redu...6 versions - Latest release: 3 months ago - 18 thousand downloads total - 0 stars on GitHub - 1 maintainer
COCOA 2.24.0
Coordinate Covariation Analysis6 versions - Latest release: 3 months ago - 15.2 thousand downloads total - 1 maintainer
Top 3.9% on bioconductor.org
6 versions - Latest release: 3 months ago - 1 dependent package - 105 thousand downloads total - 1 maintainer
made4 1.84.0
Multivariate analysis of microarray data using ADE46 versions - Latest release: 3 months ago - 1 dependent package - 105 thousand downloads total - 1 maintainer
phenopath 1.34.0
Genomic trajectories with heterogeneous genetic and environmental backgrounds6 versions - Latest release: 3 months ago - 1 dependent package - 22.4 thousand downloads total - 1 maintainer
Pigengene 1.35.0
Infers biological signatures from gene expression data6 versions - Latest release: 3 months ago - 1 dependent package - 21.3 thousand downloads total - 1 maintainer
ramwas 1.34.0
Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms6 versions - Latest release: 3 months ago - 21 thousand downloads total - 1 maintainer
Top 3.2% on bioconductor.org
8 versions - Latest release: 4 months ago - 11 dependent packages - 270 thousand downloads total - 108 stars on GitHub - 1 maintainer
SNPRelate 1.44.0
Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data8 versions - Latest release: 4 months ago - 11 dependent packages - 270 thousand downloads total - 108 stars on GitHub - 1 maintainer
acde 1.40.0
Artificial Components Detection of Differentially Expressed Genes6 versions - Latest release: 3 months ago - 24.8 thousand downloads total - 1 maintainer
STATegRa 1.46.0
Classes and methods for multi-omics data integration6 versions - Latest release: 3 months ago - 24.2 thousand downloads total - 2 maintainers
OMICsPCA 1.28.0
An R package for quantitative integration and analysis of multiple omics assays from heterogeneou...6 versions - Latest release: 3 months ago - 16.6 thousand downloads total - 1 maintainer
missRows 1.30.0
Handling Missing Individuals in Multi-Omics Data Integration6 versions - Latest release: 3 months ago - 13.6 thousand downloads total - 1 maintainer
ClustAll 1.6.0
ClustAll: Data driven strategy to robustly identify stratification of patients within complex dis...5 versions - Latest release: 3 months ago - 5.2 thousand downloads total - 1 maintainer
AffiXcan 1.28.0
A Functional Approach To Impute Genetically Regulated Expression6 versions - Latest release: 3 months ago - 16.1 thousand downloads total - 1 maintainer
RiboProfiling 1.39.1
Ribosome Profiling Data Analysis: from BAM to Data Representation and Interpretation6 versions - Latest release: 3 months ago - 25.9 thousand downloads total - 1 maintainer
esetVis 1.36.0
Visualizations of expressionSet Bioconductor object7 versions - Latest release: 3 months ago - 20.1 thousand downloads total - 1 maintainer
ENmix 1.46.1
Quality control and analysis tools for Illumina DNA methylation BeadChip11 versions - Latest release: about 1 month ago - 48.8 thousand downloads total - 1 maintainer
padma 1.20.0
Individualized Multi-Omic Pathway Deviation Scores Using Multiple Factor Analysis8 versions - Latest release: 4 months ago - 10.2 thousand downloads total - 3 stars on GitHub - 1 maintainer
iNETgrate 1.8.0
Integrates DNA methylation data with gene expression in a single gene network6 versions - Latest release: about 1 month ago - 5.72 thousand downloads total - 65 stars on GitHub - 1 maintainer
phantasus 1.30.0
Visual and interactive gene expression analysis6 versions - Latest release: 4 months ago - 20.4 thousand downloads total - 1 maintainer
Top 5.4% on bioconductor.org
6 versions - Latest release: 4 months ago - 2 dependent packages - 67.1 thousand downloads total - 56 stars on GitHub - 1 maintainer
pcaExplorer 3.4.0
Interactive Visualization of RNA-seq Data Using a Principal Components Approach6 versions - Latest release: 4 months ago - 2 dependent packages - 67.1 thousand downloads total - 56 stars on GitHub - 1 maintainer
vsclust 1.12.0
Feature-based variance-sensitive quantitative clustering6 versions - Latest release: 3 months ago - 7.13 thousand downloads total - 1 maintainer
corral 1.20.0
Correspondence Analysis for Single Cell Data6 versions - Latest release: 3 months ago - 12 thousand downloads total - 1 maintainer
tenXplore 1.32.0
ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics7 versions - Latest release: 3 months ago - 14.7 thousand downloads total - 1 maintainer
ccImpute 1.12.0
ccImpute: an accurate and scalable consensus clustering based approach to impute dropout events i...7 versions - Latest release: 4 months ago - 7.5 thousand downloads total - 2 stars on GitHub - 1 maintainer
pathwayPCA 1.26.0
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection6 versions - Latest release: 3 months ago - 1 dependent package - 15.2 thousand downloads total - 11 stars on GitHub - 1 maintainer
Top 4.6% on bioconductor.org
8 versions - Latest release: 6 days ago - 4 dependent packages - 128 thousand downloads total - 370 stars on GitHub - 1 maintainer
PCAtools 2.22.4
PCAtools: Everything Principal Components Analysis8 versions - Latest release: 6 days ago - 4 dependent packages - 128 thousand downloads total - 370 stars on GitHub - 1 maintainer
Top 3.8% on bioconductor.org
6 versions - Latest release: 4 months ago - 9 dependent packages - 139 thousand downloads total - 1 maintainer
ropls 1.42.0
PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics data6 versions - Latest release: 4 months ago - 9 dependent packages - 139 thousand downloads total - 1 maintainer
DiscoRhythm 1.26.0
Interactive Workflow for Discovering Rhythmicity in Biological Data6 versions - Latest release: 4 months ago - 13.9 thousand downloads total - 13 stars on GitHub - 1 maintainer
limpca 1.6.0
An R package for the linear modeling of high-dimensional designed data based on ASCA/APCA family ...4 versions - Latest release: 4 months ago - 4.96 thousand downloads total - 2 stars on GitHub - 1 maintainer
GenomicSuperSignature 1.18.0
Interpretation of RNA-seq experiments through robust, efficient comparison to public databases7 versions - Latest release: 4 months ago - 9.95 thousand downloads total - 12 stars on GitHub - 1 maintainer
systemPipeTools 1.18.0
Tools for data visualization6 versions - Latest release: 4 months ago - 8.47 thousand downloads total - 1 maintainer
psichomics 1.36.1
Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation8 versions - Latest release: about 1 month ago - 22.2 thousand downloads total - 33 stars on GitHub - 1 maintainer
mogsa 1.44.0
Multiple omics data integrative clustering and gene set analysis6 versions - Latest release: 4 months ago - 30.5 thousand downloads total - 1 maintainer
MultiRNAflow 1.8.0
An R package for integrated analysis of temporal RNA-seq data with multiple biological conditions5 versions - Latest release: 3 months ago - 6.34 thousand downloads total - 0 stars on GitHub - 1 maintainer
PLSDAbatch 1.6.0
PLSDA-batch4 versions - Latest release: 4 months ago - 5.5 thousand downloads total - 13 stars on GitHub - 1 maintainer
squallms 1.4.0
Speedy quality assurance via lasso labeling for LC-MS data3 versions - Latest release: 4 months ago - 3.58 thousand downloads total - 3 stars on GitHub - 1 maintainer
KBoost 1.18.0
Inference of gene regulatory networks from gene expression data6 versions - Latest release: 3 months ago - 7.78 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 6.9% on bioconductor.org
6 versions - Latest release: 3 months ago - 1 dependent package - 54.2 thousand downloads total - 16 stars on GitHub - 1 maintainer
lfa 2.10.0
Logistic Factor Analysis for Categorical Data6 versions - Latest release: 3 months ago - 1 dependent package - 54.2 thousand downloads total - 16 stars on GitHub - 1 maintainer
PathoStat 1.36.0
PathoStat Statistical Microbiome Analysis Package6 versions - Latest release: 4 months ago - 19.4 thousand downloads total - 8 stars on GitHub - 2 maintainers
autonomics 1.18.0
Unified Statistical Modeling of Omics Data9 versions - Latest release: 4 months ago - 10 thousand downloads total - 3 stars on GitHub - 1 maintainer
BatchQC 2.6.1
Batch Effects Quality Control Software7 versions - Latest release: 19 days ago - 29.7 thousand downloads total - 9 stars on GitHub - 1 maintainer
SurfR 1.6.0
Surface Protein Prediction and Identification10 versions - Latest release: 4 months ago - 5.41 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 4.0% on bioconductor.org
6 versions - Latest release: 4 months ago - 1 dependent package - 95.3 thousand downloads total - 51 stars on GitHub - 1 maintainer
RTCGA 1.40.0
The Cancer Genome Atlas Data Integration6 versions - Latest release: 4 months ago - 1 dependent package - 95.3 thousand downloads total - 51 stars on GitHub - 1 maintainer
ChromSCape 1.20.0
Analysis of single-cell epigenomics datasets with a Shiny App6 versions - Latest release: 4 months ago - 10.2 thousand downloads total - 14 stars on GitHub - 1 maintainer
gcatest 2.10.0
Genotype Conditional Association TEST6 versions - Latest release: 3 months ago - 17.3 thousand downloads total - 6 stars on GitHub - 1 maintainer
POMA 1.20.0
Tools for Omics Data Analysis6 versions - Latest release: 4 months ago - 1 dependent package - 15.1 thousand downloads total - 12 stars on GitHub - 1 maintainer
rqt 1.36.0
rqt: utilities for gene-level meta-analysis6 versions - Latest release: 4 months ago - 14.1 thousand downloads total - 2 stars on GitHub - 1 maintainer
MultiBaC 1.20.0
Multiomic Batch effect Correction6 versions - Latest release: 3 months ago - 12.3 thousand downloads total - 1 maintainer
MSstatsSampleSize 1.16.0 removed
Simulation tool for optimal design of high-dimensional MS-based proteomics experiment2 versions - Latest release: over 2 years ago - 3.89 thousand downloads total - 1 maintainer
Related Keywords
Software
58
GeneExpression
24
DimensionReduction
23
Visualization
22
RNASeq
21
Clustering
20
Sequencing
18
Transcriptomics
15
StatisticalMethod
14
Normalization
14
ImmunoOncology
14
DifferentialExpression
13
Regression
12
Transcription
12
Preprocessing
11
Classification
11
BatchEffect
11
QualityControl
11
Microarray
10
SingleCell
9
MultipleComparison
7
Metabolomics
7
DNAMethylation
7
Proteomics
7
Pathways
7
SystemsBiology
6
GUI
5
GraphAndNetwork
5
DataRepresentation
5
Epigenetics
5
bioconductor
5
GeneSetEnrichment
5
DataImport
5
Survival
5
FunctionalGenomics
4
MassSpectrometry
4
r
4
Network
4
BiomedicalInformatics
4
SNP
4
GenomeWideAssociation
4
Genetics
4
TimeCourse
3
ATACSeq
3
GeneRegulation
3
MethylSeq
3
NetworkInference
3
Lipidomics
3
r-package
3
ShinyApps
3
GenePrediction
3
ReportWriting
3
GeneticVariability
3
ExperimentalDesign
3
Bayesian
3
ChIPSeq
3
FeatureExtraction
3
DifferentialMethylation
2
Infrastructure
2
bioinformatics
2
user-friendly
2
shiny
2
Microbiome
2
rna-seq-data
2
mRNAMicroarray
2
BiocViews
2
bioconductor-package
2
exploratory-data-analysis
2
data-visualization
2
MultidimensionalScaling
2
Coverage
2
DecisionTree
2
Annotation
2
MethylationArray
2
GenomicVariation
2
data-analyses
1
differential-gene-expression
1
AlternativeSplicing
1
differential-splicing-analysis
1
transferlearning
1
gene-expression
1
rna-sequencing-profiles
1
principal-component-analysis
1
mesh
1
DifferentialSplicing
1
Workflow
1
gtex
1
recount2
1
alternative-splicing
1
splicing-quantification
1
rstats
1
pre-processing
1
pipeline
1
omics-data-integration
1
machine-learning
1
dimension-reduction
1
single-cell
1
epigenomics
1
DifferentialPeakCalling
1
surfaceome
1