bioconductor.org "Reactome" keyword
View the packages on the bioconductor.org package registry that are tagged with the "Reactome" keyword.
attract 1.60.0
Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor La...5 versions - Latest release: 4 months ago - 37.9 thousand downloads total - 1 maintainer
Top 2.7% on bioconductor.org
5 versions - Latest release: 4 months ago - 11 dependent packages - 310 thousand downloads total - 8 stars on GitHub - 1 maintainer
graphite 1.54.0
GRAPH Interaction from pathway Topological Environment5 versions - Latest release: 4 months ago - 11 dependent packages - 310 thousand downloads total - 8 stars on GitHub - 1 maintainer
Top 1.2% on bioconductor.org
14 versions - Latest release: 5 months ago - 59 dependent packages - 2.01 million downloads total - 1 maintainer
clusterProfiler 4.16.0
A universal enrichment tool for interpreting omics data14 versions - Latest release: 5 months ago - 59 dependent packages - 2.01 million downloads total - 1 maintainer
pathlinkR 1.4.0
Analyze and interpret RNA-Seq results4 versions - Latest release: 4 months ago - 4.63 thousand downloads total - 29 stars on GitHub - 1 maintainer
ReactomeGSA 1.22.0
Client for the Reactome Analysis Service for comparative multi-omics gene set analysis6 versions - Latest release: 4 months ago - 20.4 thousand downloads total - 27 stars on GitHub - 1 maintainer
famat 1.18.0
Functional analysis of metabolic and transcriptomic data5 versions - Latest release: 4 months ago - 7.7 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 9.0% on bioconductor.org
5 versions - Latest release: 4 months ago - 2 dependent packages - 36.4 thousand downloads total - 1 maintainer
MLP 1.56.0
Mean Log P Analysis5 versions - Latest release: 4 months ago - 2 dependent packages - 36.4 thousand downloads total - 1 maintainer
bioCancer 1.36.0
Interactive Multi-Omics Cancers Data Visualization and Analysis7 versions - Latest release: 4 months ago - 17.6 thousand downloads total - 21 stars on GitHub - 1 maintainer
mitology 1.0.0
Study of mitochondrial activity from RNA-seq data1 version - Latest release: 5 months ago - 1.63 thousand downloads total - 2 stars on GitHub - 1 maintainer
goSorensen 1.10.0
Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)5 versions - Latest release: 4 months ago - 5.66 thousand downloads total - 1 maintainer
fenr 1.6.1
Fast functional enrichment for interactive applications11 versions - Latest release: 2 months ago - 5.11 thousand downloads total - 0 stars on GitHub - 1 maintainer
CBNplot 1.8.0
plot bayesian network inferred from gene expression data based on enrichment analysis results7 versions - Latest release: 4 months ago - 7.35 thousand downloads total - 56 stars on GitHub - 1 maintainer
mitch 1.20.0
Multi-Contrast Gene Set Enrichment Analysis7 versions - Latest release: 4 months ago - 9.31 thousand downloads total - 16 stars on GitHub - 1 maintainer
RegionalST 1.6.0
Investigating regions of interest and performing regional cell type-specific analysis with spatia...6 versions - Latest release: 4 months ago - 3.98 thousand downloads total - 1 maintainer
MetaboSignal 1.38.0
MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways6 versions - Latest release: 4 months ago - 19.4 thousand downloads total - 2 maintainers
paxtoolsr 1.42.0
Access Pathways from Multiple Databases Through BioPAX and Pathway Commons5 versions - Latest release: 4 months ago - 27.5 thousand downloads total - 10 stars on GitHub - 1 maintainer
ReactomeContentService4R 1.16.0
Interface for the Reactome Content Service5 versions - Latest release: 4 months ago - 1 dependent package - 7.19 thousand downloads total - 4 stars on GitHub - 1 maintainer
PanViz 1.10.0
Integrating Multi-Omic Network Data With Summay-Level GWAS Data5 versions - Latest release: 4 months ago - 3.36 thousand downloads total - 3 stars on GitHub - 1 maintainer
slalom 1.30.0
Factorial Latent Variable Modeling of Single-Cell RNA-Seq Data5 versions - Latest release: 4 months ago - 14.4 thousand downloads total - 1 maintainer
MOSClip 1.2.2
Multi Omics Survival Clip4 versions - Latest release: 2 months ago - 2.11 thousand downloads total - 0 stars on GitHub - 1 maintainer
terapadog 1.0.0
Translational Efficiency Regulation Analysis using the PADOG Method1 version - Latest release: 5 months ago - 1.53 thousand downloads total - 0 stars on GitHub - 1 maintainer
GeDi 1.4.0
Defining and visualizing the distances between different genesets4 versions - Latest release: 4 months ago - 3.54 thousand downloads total - 1 stars on GitHub - 1 maintainer
multiGSEA 1.18.0
Combining GSEA-based pathway enrichment with multi omics data integration6 versions - Latest release: 4 months ago - 13 thousand downloads total - 19 stars on GitHub - 1 maintainer
ReactomeGraph4R 1.16.0
Interface for the Reactome Graph Database6 versions - Latest release: 4 months ago - 4.24 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 2.8% on bioconductor.org
5 versions - Latest release: 4 months ago - 15 dependent packages - 512 thousand downloads total - 1 maintainer
ReactomePA 1.52.0
Reactome Pathway Analysis5 versions - Latest release: 4 months ago - 15 dependent packages - 512 thousand downloads total - 1 maintainer
RandomWalkRestartMH 1.26.0 removed
Random walk with restart on multiplex and heterogeneous Networks4 versions - Latest release: 9 months ago - 1 dependent package - 10.7 thousand downloads total - 21 stars on GitHub - 1 maintainer
InterMineR 1.26.0 removed
R Interface with InterMine-Powered Databases4 versions - Latest release: over 1 year ago - 12 thousand downloads total - 17 stars on GitHub - 1 maintainer
ASpediaFI 1.14.0 removed
ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events1 version - Latest release: almost 2 years ago - 3.82 thousand downloads total - 1 stars on GitHub - 1 maintainer
netboxr 1.11.0 removed
netboxr1 version - Latest release: almost 2 years ago - 2.92 thousand downloads total - 1 maintainer
Related Keywords
Software
29
Pathways
22
GeneSetEnrichment
17
KEGG
17
Network
11
GeneExpression
11
GraphAndNetwork
10
Visualization
9
GO
8
RNASeq
5
Transcriptomics
5
SystemsBiology
5
MultipleComparison
5
Proteomics
4
NetworkEnrichment
4
Annotation
4
NetworkInference
3
DataImport
3
DifferentialExpression
3
SingleCell
3
FunctionalPrediction
3
Clustering
3
r
3
Microarray
3
bioinformatics
3
BioCarta
2
Metabolomics
2
Spatial
2
Transcription
2
ImmunoOncology
2
GeneRegulation
2
GeneTarget
2
GUI
2
AlternativeSplicing
2
GenomeWideAssociation
2
SNP
2
DimensionReduction
2
Sequencing
2
pathway-analysis
2
pathways
2
visualization
2
networks
2
Survival
1
StatisticalMethod
1
RiboSeq
1
ReportWriting
1
ShinyApps
1
pathway-enrichment-analysis
1
BiomedicalInformatics
1
GenePrediction
1
MathematicalBiology
1
SomaticMutation
1
complex-systems
1
computational-biology
1
multiplex-networks
1
systems-biology
1
ComparativeGenomics
1
FunctionalGenomics
1
GenomeAnnotation
1
biology
1
genomics
1
intermine
1
Coverage
1
mirror
1
compound
1
gene-ontology
1
genes
1
shiny
1
Genetics
1
DataRepresentation
1
analysis
1
biocancer-interface
1
cancer
1
cancer-studies
1
rmarkdown
1
ThirdPartyClient
1
Bayesian
1
bayesian
1
network
1
DNAMethylation
1
Epigenetics
1
MethylationArray
1
gene-regulation
1
gene-seq-analysis
1
GeneSignaling
1
Normalization
1
Regression
1