Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "Reactome" keyword
PanViz 1.4.0
Integrating Multi-Omic Network Data With Summay-Level GWAS Data3 versions - Latest release: 6 months ago - 1.66 thousand downloads total - 3 stars on GitHub - 1 maintainer
slalom 1.24.0
Factorial Latent Variable Modeling of Single-Cell RNA-Seq Data3 versions - Latest release: 6 months ago - 9.37 thousand downloads total - 1 maintainer
Top 9.0% on bioconductor.org
3 versions - Latest release: 6 months ago - 2 dependent packages - 29.4 thousand downloads total - 1 maintainer
MLP 1.50.0
Mean Log P Analysis3 versions - Latest release: 6 months ago - 2 dependent packages - 29.4 thousand downloads total - 1 maintainer
goSorensen 1.4.0
Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)3 versions - Latest release: 6 months ago - 1.75 thousand downloads total - 1 maintainer
attract 1.54.0
Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor La...3 versions - Latest release: 6 months ago - 29.9 thousand downloads total - 1 maintainer
MetaboSignal 1.32.1
MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways3 versions - Latest release: 5 months ago - 13.6 thousand downloads total - 2 maintainers
GeDi 1.0.0
Defining and visualizing the distances between different genesets1 version - Latest release: 21 days ago - 148 downloads total - 1 stars on GitHub - 1 maintainer
ReactomeContentService4R 1.12.0
Interface for the Reactome Content Service3 versions - Latest release: 6 days ago - 1 dependent package - 4.78 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 1.2% on bioconductor.org
4 versions - Latest release: 19 days ago - 59 dependent packages - 1.4 million downloads total - 1 maintainer
clusterProfiler 4.12.0
A universal enrichment tool for interpreting omics data4 versions - Latest release: 19 days ago - 59 dependent packages - 1.4 million downloads total - 1 maintainer
bioCancer 1.32.0
Interactive Multi-Omics Cancers Data Visualization and Analysis5 versions - Latest release: 8 days ago - 12.4 thousand downloads total - 19 stars on GitHub - 1 maintainer
Top 2.8% on bioconductor.org
2 versions - Latest release: 7 months ago - 15 dependent packages - 439 thousand downloads total - 1 maintainer
ReactomePA 1.46.0
Reactome Pathway Analysis2 versions - Latest release: 7 months ago - 15 dependent packages - 439 thousand downloads total - 1 maintainer
Top 2.7% on bioconductor.org
2 versions - Latest release: 6 months ago - 11 dependent packages - 229 thousand downloads total - 5 stars on GitHub - 1 maintainer
graphite 1.48.0
GRAPH Interaction from pathway Topological Environment2 versions - Latest release: 6 months ago - 11 dependent packages - 229 thousand downloads total - 5 stars on GitHub - 1 maintainer
InterMineR 1.26.0
R Interface with InterMine-Powered Databases4 versions - Latest release: 12 days ago - 10.4 thousand downloads total - 17 stars on GitHub - 1 maintainer
mitch 1.16.0
Multi-Contrast Gene Set Enrichment Analysis3 versions - Latest release: 20 days ago - 5.04 thousand downloads total - 14 stars on GitHub - 1 maintainer
CBNplot 1.4.0
plot bayesian network inferred from gene expression data based on enrichment analysis results4 versions - Latest release: 16 days ago - 2.56 thousand downloads total - 52 stars on GitHub - 1 maintainer
ReactomeGSA 1.18.0
Client for the Reactome Analysis Service for comparative multi-omics gene set analysis4 versions - Latest release: 18 days ago - 12.7 thousand downloads total - 20 stars on GitHub - 1 maintainer
multiGSEA 1.14.0
Combining GSEA-based pathway enrichment with multi omics data integration3 versions - Latest release: 20 days ago - 7.23 thousand downloads total - 16 stars on GitHub - 1 maintainer
pathlinkR 1.0.0
Analyze and interpret RNA-Seq results1 version - Latest release: 21 days ago - 216 downloads total - 4 stars on GitHub - 1 maintainer
famat 1.12.0
Functional analysis of metabolic and transcriptomic data2 versions - Latest release: 6 months ago - 3.29 thousand downloads total - 1 stars on GitHub - 1 maintainer
ReactomeGraph4R 1.10.0
Interface for the Reactome Graph Database2 versions - Latest release: 6 months ago - 2.36 thousand downloads total - 6 stars on GitHub - 1 maintainer
RegionalST 1.0.1
Investigating regions of interest and performing cross-regional analysis with spatial transcripto...2 versions - Latest release: 5 months ago - 750 downloads total - 1 maintainer
fenr 1.0.5
Fast functional enrichment for interactive applications4 versions - Latest release: 3 months ago - 733 downloads total - 0 stars on GitHub - 1 maintainer
RandomWalkRestartMH 1.22.0
Random walk with restart on multiplex and heterogeneous Networks2 versions - Latest release: 6 months ago - 1 dependent package - 9.31 thousand downloads total - 17 stars on GitHub - 1 maintainer
paxtoolsr 1.36.0
Access Pathways from Multiple Databases Through BioPAX and Pathway Commons2 versions - Latest release: 6 months ago - 23.9 thousand downloads total - 10 stars on GitHub - 1 maintainer
ASpediaFI 1.14.0 removed
ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events1 version - Latest release: 7 months ago - 3.82 thousand downloads total - 1 stars on GitHub - 1 maintainer
netboxr 1.11.0 removed
netboxr1 version - Latest release: 7 months ago - 2.92 thousand downloads total - 1 maintainer
Related Keywords
Software
26
Pathways
20
KEGG
17
GeneSetEnrichment
16
Network
11
GeneExpression
10
GraphAndNetwork
9
Visualization
8
GO
7
SystemsBiology
5
MultipleComparison
5
Annotation
4
Transcriptomics
4
RNASeq
4
Proteomics
4
NetworkEnrichment
4
DifferentialExpression
3
FunctionalPrediction
3
Microarray
3
NetworkInference
3
Clustering
3
pathway-analysis
2
bioinformatics
2
DataImport
2
Transcription
2
pathways
2
r
2
AlternativeSplicing
2
BioCarta
2
SNP
2
Metabolomics
2
ImmunoOncology
2
GUI
2
GenomeWideAssociation
2
GeneTarget
2
SingleCell
2
Sequencing
2
gene-regulation
1
gene-seq-analysis
1
Bayesian
1
bayesian
1
network
1
visualization
1
compound
1
gene-ontology
1
genes
1
shiny
1
Spatial
1
BiomedicalInformatics
1
GenePrediction
1
MathematicalBiology
1
SomaticMutation
1
complex-systems
1
computational-biology
1
multiplex-networks
1
networks
1
systems-biology
1
Coverage
1
ShinyApps
1
ReportWriting
1
DataRepresentation
1
analysis
1
biocancer-interface
1
cancer
1
cancer-studies
1
rmarkdown
1
ThirdPartyClient
1
mirror
1
GeneSignaling
1
Genetics
1
ComparativeGenomics
1
FunctionalGenomics
1
Normalization
1
GeneRegulation
1
GenomeAnnotation
1
DimensionReduction
1
biology
1
genomics
1
intermine
1
DNAMethylation
1
Epigenetics
1
MethylationArray
1