bioconductor.org "Reactome" keyword
View the packages on the bioconductor.org package registry that are tagged with the "Reactome" keyword.
MOSClip 1.2.2
Multi Omics Survival Clip4 versions - Latest release: about 1 month ago - 1.85 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 1.2% on bioconductor.org
14 versions - Latest release: 3 months ago - 59 dependent packages - 1.93 million downloads total - 1 maintainer
clusterProfiler 4.16.0
A universal enrichment tool for interpreting omics data14 versions - Latest release: 3 months ago - 59 dependent packages - 1.93 million downloads total - 1 maintainer
RegionalST 1.6.0
Investigating regions of interest and performing regional cell type-specific analysis with spatia...6 versions - Latest release: 2 months ago - 3.74 thousand downloads total - 1 maintainer
terapadog 1.0.0
Translational Efficiency Regulation Analysis using the PADOG Method1 version - Latest release: 3 months ago - 1.3 thousand downloads total - 0 stars on GitHub - 1 maintainer
GeDi 1.4.0
Defining and visualizing the distances between different genesets4 versions - Latest release: 3 months ago - 3.29 thousand downloads total - 1 stars on GitHub - 1 maintainer
multiGSEA 1.18.0
Combining GSEA-based pathway enrichment with multi omics data integration6 versions - Latest release: 3 months ago - 12.7 thousand downloads total - 19 stars on GitHub - 1 maintainer
Top 2.8% on bioconductor.org
5 versions - Latest release: 3 months ago - 15 dependent packages - 506 thousand downloads total - 1 maintainer
ReactomePA 1.52.0
Reactome Pathway Analysis5 versions - Latest release: 3 months ago - 15 dependent packages - 506 thousand downloads total - 1 maintainer
ReactomeGraph4R 1.16.0
Interface for the Reactome Graph Database6 versions - Latest release: 3 months ago - 4.21 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 2.7% on bioconductor.org
5 versions - Latest release: 3 months ago - 11 dependent packages - 295 thousand downloads total - 8 stars on GitHub - 1 maintainer
graphite 1.54.0
GRAPH Interaction from pathway Topological Environment5 versions - Latest release: 3 months ago - 11 dependent packages - 295 thousand downloads total - 8 stars on GitHub - 1 maintainer
ReactomeGSA 1.22.0
Client for the Reactome Analysis Service for comparative multi-omics gene set analysis6 versions - Latest release: 3 months ago - 19.4 thousand downloads total - 25 stars on GitHub - 1 maintainer
mitology 1.0.0
Study of mitochondrial activity from RNA-seq data1 version - Latest release: 3 months ago - 1.07 thousand downloads total - 2 stars on GitHub - 1 maintainer
goSorensen 1.10.0
Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)5 versions - Latest release: 3 months ago - 5.11 thousand downloads total - 1 maintainer
bioCancer 1.36.0
Interactive Multi-Omics Cancers Data Visualization and Analysis7 versions - Latest release: 3 months ago - 16.9 thousand downloads total - 21 stars on GitHub - 1 maintainer
pathlinkR 1.4.0
Analyze and interpret RNA-Seq results4 versions - Latest release: 3 months ago - 4.09 thousand downloads total - 29 stars on GitHub - 1 maintainer
mitch 1.20.0
Multi-Contrast Gene Set Enrichment Analysis7 versions - Latest release: 3 months ago - 8.59 thousand downloads total - 16 stars on GitHub - 1 maintainer
MetaboSignal 1.38.0
MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways6 versions - Latest release: 3 months ago - 18.5 thousand downloads total - 2 maintainers
CBNplot 1.8.0
plot bayesian network inferred from gene expression data based on enrichment analysis results7 versions - Latest release: 3 months ago - 6.71 thousand downloads total - 56 stars on GitHub - 1 maintainer
Top 9.0% on bioconductor.org
5 versions - Latest release: 3 months ago - 2 dependent packages - 35.5 thousand downloads total - 1 maintainer
MLP 1.56.0
Mean Log P Analysis5 versions - Latest release: 3 months ago - 2 dependent packages - 35.5 thousand downloads total - 1 maintainer
ReactomeContentService4R 1.16.0
Interface for the Reactome Content Service5 versions - Latest release: 3 months ago - 1 dependent package - 7.05 thousand downloads total - 4 stars on GitHub - 1 maintainer
attract 1.60.0
Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor La...5 versions - Latest release: 3 months ago - 36.8 thousand downloads total - 1 maintainer
slalom 1.30.0
Factorial Latent Variable Modeling of Single-Cell RNA-Seq Data5 versions - Latest release: 3 months ago - 13.7 thousand downloads total - 1 maintainer
famat 1.18.0
Functional analysis of metabolic and transcriptomic data5 versions - Latest release: 2 months ago - 7.09 thousand downloads total - 1 stars on GitHub - 1 maintainer
PanViz 1.10.0
Integrating Multi-Omic Network Data With Summay-Level GWAS Data5 versions - Latest release: 3 months ago - 3.25 thousand downloads total - 3 stars on GitHub - 1 maintainer
fenr 1.6.1
Fast functional enrichment for interactive applications11 versions - Latest release: about 1 month ago - 4.5 thousand downloads total - 0 stars on GitHub - 1 maintainer
paxtoolsr 1.42.0
Access Pathways from Multiple Databases Through BioPAX and Pathway Commons5 versions - Latest release: 2 months ago - 27.3 thousand downloads total - 10 stars on GitHub - 1 maintainer
RandomWalkRestartMH 1.26.0 removed
Random walk with restart on multiplex and heterogeneous Networks4 versions - Latest release: 8 months ago - 1 dependent package - 10.7 thousand downloads total - 21 stars on GitHub - 1 maintainer
InterMineR 1.26.0 removed
R Interface with InterMine-Powered Databases4 versions - Latest release: about 1 year ago - 12 thousand downloads total - 17 stars on GitHub - 1 maintainer
ASpediaFI 1.14.0 removed
ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events1 version - Latest release: almost 2 years ago - 3.82 thousand downloads total - 1 stars on GitHub - 1 maintainer
netboxr 1.11.0 removed
netboxr1 version - Latest release: almost 2 years ago - 2.92 thousand downloads total - 1 maintainer
Related Keywords
Software
29
Pathways
22
GeneSetEnrichment
17
KEGG
17
GeneExpression
11
Network
11
GraphAndNetwork
10
Visualization
9
GO
8
SystemsBiology
5
RNASeq
5
Transcriptomics
5
MultipleComparison
5
NetworkEnrichment
4
Proteomics
4
Annotation
4
SingleCell
3
Microarray
3
DataImport
3
DifferentialExpression
3
bioinformatics
3
Clustering
3
NetworkInference
3
FunctionalPrediction
3
r
3
GeneTarget
2
networks
2
visualization
2
SNP
2
GenomeWideAssociation
2
Sequencing
2
ImmunoOncology
2
DimensionReduction
2
Spatial
2
GeneRegulation
2
GUI
2
Transcription
2
pathways
2
pathway-analysis
2
AlternativeSplicing
2
BioCarta
2
Metabolomics
2
multiplex-networks
1
Normalization
1
Coverage
1
intermine
1
genomics
1
compound
1
gene-ontology
1
genes
1
shiny
1
systems-biology
1
computational-biology
1
biology
1
BiomedicalInformatics
1
ComparativeGenomics
1
GenePrediction
1
GenomeAnnotation
1
FunctionalGenomics
1
MathematicalBiology
1
SomaticMutation
1
complex-systems
1
Regression
1
StatisticalMethod
1
Survival
1
RiboSeq
1
ReportWriting
1
ShinyApps
1
ThirdPartyClient
1
mirror
1
DataRepresentation
1
analysis
1
biocancer-interface
1
cancer
1
cancer-studies
1
rmarkdown
1
pathway-enrichment-analysis
1
DNAMethylation
1
Epigenetics
1
MethylationArray
1
gene-regulation
1
gene-seq-analysis
1
GeneSignaling
1
Bayesian
1
bayesian
1
network
1
Genetics
1