bioconductor.org "ReportWriting" keyword
ngsReports 2.12.1
Load FastqQC reports and other NGS related files8 versions - Latest release: 4 months ago - 16.6 thousand downloads total - 23 stars on GitHub - 1 maintainer
abseqR 1.28.0
Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries6 versions - Latest release: 4 months ago - 16.2 thousand downloads total - 0 stars on GitHub - 1 maintainer
ideal 2.4.0
Interactive Differential Expression AnaLysis6 versions - Latest release: 5 months ago - 23.8 thousand downloads total - 29 stars on GitHub - 1 maintainer
systemPipeTools 1.18.0
Tools for data visualization6 versions - Latest release: 5 months ago - 8.9 thousand downloads total - 1 maintainer
seqArchRplus 1.10.0
Downstream analyses of promoter sequence architectures and HTML report generation7 versions - Latest release: about 1 month ago - 6.15 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 8.7% on bioconductor.org
6 versions - Latest release: 4 months ago - 1 dependent package - 37.9 thousand downloads total - 10 stars on GitHub - 1 maintainer
regionReport 1.44.0
Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results6 versions - Latest release: 4 months ago - 1 dependent package - 37.9 thousand downloads total - 10 stars on GitHub - 1 maintainer
Top 2.4% on bioconductor.org
6 versions - Latest release: 4 months ago - 2 dependent packages - 305 thousand downloads total - 1 maintainer
DiffBind 3.20.0
Differential Binding Analysis of ChIP-Seq Peak Data6 versions - Latest release: 4 months ago - 2 dependent packages - 305 thousand downloads total - 1 maintainer
MBECS 1.14.0
Evaluation and correction of batch effects in microbiome data-sets6 versions - Latest release: 4 months ago - 10.4 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 6.0% on bioconductor.org
15 versions - Latest release: about 1 month ago - 3 dependent packages - 189 thousand downloads total - 67 stars on GitHub - 1 maintainer
tximeta 1.28.3
Transcript Quantification Import with Automatic Metadata15 versions - Latest release: about 1 month ago - 3 dependent packages - 189 thousand downloads total - 67 stars on GitHub - 1 maintainer
mosdef 1.6.0
MOSt frequently used and useful Differential Expression Functions5 versions - Latest release: 4 months ago - 10.2 thousand downloads total - 0 stars on GitHub - 1 maintainer
signifinder 1.12.0
Collection and implementation of public transcriptional cancer signatures7 versions - Latest release: 5 months ago - 6.78 thousand downloads total - 9 stars on GitHub - 1 maintainer
Top 9.3% on bioconductor.org
6 versions - Latest release: 4 months ago - 35 thousand downloads total - 1 maintainer
xmapbridge 1.68.0
Export plotting files to the xmapBridge for visualisation in X:Map6 versions - Latest release: 4 months ago - 35 thousand downloads total - 1 maintainer
metaseqR2 1.22.1
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statisti...7 versions - Latest release: 17 days ago - 12.7 thousand downloads total - 1 maintainer
Top 3.5% on bioconductor.org
6 versions - Latest release: 4 months ago - 1 dependent package - 188 thousand downloads total - 34 stars on GitHub - 1 maintainer
Glimma 2.20.0
Interactive visualizations for gene expression analysis6 versions - Latest release: 4 months ago - 1 dependent package - 188 thousand downloads total - 34 stars on GitHub - 1 maintainer
ChromSCape 1.20.0
Analysis of single-cell epigenomics datasets with a Shiny App6 versions - Latest release: 4 months ago - 10.6 thousand downloads total - 14 stars on GitHub - 1 maintainer
Top 6.1% on bioconductor.org
7 versions - Latest release: 4 months ago - 5 dependent packages - 75.7 thousand downloads total - 19 stars on GitHub - 1 maintainer
EnrichmentBrowser 2.40.0
Seamless navigation through combined results of set-based and network-based enrichment analysis7 versions - Latest release: 4 months ago - 5 dependent packages - 75.7 thousand downloads total - 19 stars on GitHub - 1 maintainer
DeepTarget 1.4.0
Deep characterization of cancer drugs3 versions - Latest release: 4 months ago - 4.01 thousand downloads total - 1 maintainer
Top 4.3% on bioconductor.org
7 versions - Latest release: about 2 months ago - 215 thousand downloads total - 1 stars on GitHub - 1 maintainer
arrayQualityMetrics 3.66.0
Quality metrics report for microarray data sets7 versions - Latest release: about 2 months ago - 215 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 9.4% on bioconductor.org
7 versions - Latest release: about 2 months ago - 34.9 thousand downloads total - 1 maintainer
R453Plus1Toolbox 1.60.0
A package for importing and analyzing data from Roche's Genome Sequencer System7 versions - Latest release: about 2 months ago - 34.9 thousand downloads total - 1 maintainer
Top 5.2% on bioconductor.org
10 versions - Latest release: 5 months ago - 1 dependent package - 89.6 thousand downloads total - 26 stars on GitHub - 1 maintainer
DEGreport 1.46.0
Report of DEG analysis10 versions - Latest release: 5 months ago - 1 dependent package - 89.6 thousand downloads total - 26 stars on GitHub - 1 maintainer
systemPipeShiny 1.20.0
systemPipeShiny: An Interactive Framework for Workflow Management and Visualization6 versions - Latest release: 4 months ago - 10.9 thousand downloads total - 1 maintainer
CellScore 1.30.0
Tool for Evaluation of Cell Identity from Transcription Profiles6 versions - Latest release: 4 months ago - 12.4 thousand downloads total - 1 maintainer
GeneTonic 3.4.0
Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional ...6 versions - Latest release: 4 months ago - 1 dependent package - 21.9 thousand downloads total - 78 stars on GitHub - 1 maintainer
annmap 1.52.0
Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.6 versions - Latest release: 5 months ago - 28.4 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 6.1% on bioconductor.org
6 versions - Latest release: 4 months ago - 77.4 thousand downloads total - 2 maintainers
ChIPQC 1.45.0
Quality metrics for ChIPseq data6 versions - Latest release: 4 months ago - 77.4 thousand downloads total - 2 maintainers
BiocBook 1.8.0
Write, containerize, publish and version Quarto books with Bioconductor5 versions - Latest release: 4 months ago - 6.55 thousand downloads total - 1 maintainer
rebook 1.20.0
Re-using Content in Bioconductor Books6 versions - Latest release: 4 months ago - 16.1 thousand downloads total - 1 maintainer
Top 5.9% on bioconductor.org
8 versions - Latest release: about 2 months ago - 3 dependent packages - 279 thousand downloads total - 54 stars on GitHub - 1 maintainer
systemPipeR 2.16.3
systemPipeR: Workflow Environment for Data Analysis and Report Generation8 versions - Latest release: about 2 months ago - 3 dependent packages - 279 thousand downloads total - 54 stars on GitHub - 1 maintainer
Top 8.2% on bioconductor.org
6 versions - Latest release: 4 months ago - 1 dependent package - 472 thousand downloads total - 1 maintainer
DynDoc 1.88.0
Dynamic document tools6 versions - Latest release: 4 months ago - 1 dependent package - 472 thousand downloads total - 1 maintainer
biocthis 1.20.0
Automate package and project setup for Bioconductor packages6 versions - Latest release: 4 months ago - 2 dependent packages - 40.3 thousand downloads total - 54 stars on GitHub - 1 maintainer
Top 7.0% on bioconductor.org
6 versions - Latest release: 4 months ago - 41.1 thousand downloads total - 1 maintainer
SpeCond 1.64.0
Condition specific detection from expression data6 versions - Latest release: 4 months ago - 41.1 thousand downloads total - 1 maintainer
easyreporting 1.22.0
Helps creating report for improving Reproducible Computational Research6 versions - Latest release: 4 months ago - 10.8 thousand downloads total - 2 stars on GitHub - 1 maintainer
countsimQC 1.28.1
Compare Characteristic Features of Count Data Sets7 versions - Latest release: about 1 month ago - 1 dependent package - 24.9 thousand downloads total - 29 stars on GitHub - 1 maintainer
tracktables 1.44.0
Build IGV tracks and HTML reports6 versions - Latest release: 4 months ago - 30 thousand downloads total - 1 maintainer
Top 9.1% on bioconductor.org
6 versions - Latest release: 5 months ago - 39 thousand downloads total - 1 maintainer
Harshlight 1.82.0
A "corrective make-up" program for microarray chips6 versions - Latest release: 5 months ago - 39 thousand downloads total - 1 maintainer
Top 5.4% on bioconductor.org
6 versions - Latest release: 5 months ago - 2 dependent packages - 67.1 thousand downloads total - 56 stars on GitHub - 1 maintainer
pcaExplorer 3.4.0
Interactive Visualization of RNA-seq Data Using a Principal Components Approach6 versions - Latest release: 5 months ago - 2 dependent packages - 67.1 thousand downloads total - 56 stars on GitHub - 1 maintainer
Top 6.4% on bioconductor.org
6 versions - Latest release: 4 months ago - 2 dependent packages - 394 thousand downloads total - 1 maintainer
annaffy 1.82.0
Annotation tools for Affymetrix biological metadata6 versions - Latest release: 4 months ago - 2 dependent packages - 394 thousand downloads total - 1 maintainer
GSEABenchmarkeR 1.30.0
Reproducible GSEA Benchmarking7 versions - Latest release: 4 months ago - 2 dependent packages - 18.4 thousand downloads total - 13 stars on GitHub - 1 maintainer
GeDi 1.6.1
Defining and visualizing the distances between different genesets6 versions - Latest release: 4 months ago - 5.37 thousand downloads total - 1 stars on GitHub - 1 maintainer
qcmetrics 1.48.0
A Framework for Quality Control7 versions - Latest release: 5 months ago - 1 dependent package - 28.7 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 2.7% on bioconductor.org
6 versions - Latest release: 4 months ago - 2 dependent packages - 140 thousand downloads total - 1 maintainer
affycoretools 1.82.0
Functions useful for those doing repetitive analyses with Affymetrix GeneChips6 versions - Latest release: 4 months ago - 2 dependent packages - 140 thousand downloads total - 1 maintainer
BiocWorkflowTools 1.36.0
Tools to aid the development of Bioconductor Workflow packages6 versions - Latest release: 5 months ago - 28.7 thousand downloads total - 1 maintainer
DMRforPairs 1.38.0 removed
DMRforPairs: identifying Differentially Methylated Regions between unique samples using array bas...2 versions - Latest release: over 2 years ago - 16 thousand downloads total - 1 maintainer
NanoStringQCPro 1.32.0 removed
Quality metrics and data processing methods for NanoString mRNA gene expression data1 version - Latest release: over 2 years ago - 18.7 thousand downloads total - 1 maintainer
Related Keywords
Software
44
Visualization
22
QualityControl
18
GeneExpression
14
RNASeq
14
Microarray
14
ImmunoOncology
13
Sequencing
12
DifferentialExpression
12
GeneSetEnrichment
10
Annotation
8
Transcription
8
Pathways
7
Clustering
7
DataImport
7
Infrastructure
7
bioconductor
6
r
6
ShinyApps
6
MultipleComparison
6
Preprocessing
5
Normalization
5
ChIPSeq
5
OneChannel
5
GO
5
Transcriptomics
4
SingleCell
4
GUI
4
shiny
4
differential-expression
3
reproducible-research
3
rna-seq-analysis
3
BatchEffect
3
user-friendly
3
MethylSeq
3
FunctionalGenomics
3
Epigenetics
3
ExperimentalDesign
3
BiomedicalInformatics
3
ATACSeq
3
PrincipalComponent
3
DifferentialMethylation
3
DifferentialPeakCalling
3
bioconductor-package
2
NetworkEnrichment
2
Network
2
GraphAndNetwork
2
WorkflowStep
2
rna-seq-data
2
transcriptome
2
Coverage
2
GeneTarget
2
rna-seq
2
Microbiome
2
rstats
2
CellBiology
2
qc
1
report
1
smallrna
1
principal-components
1
u24ca289073
1
DimensionReduction
1
data-exploration
1
data-visualization
1
mRNAMicroarray
1
functional-enrichment-analysis
1
gene-expression
1
KEGG
1
gui
1
pathway-analysis
1
Reactome
1
usethis
1
transcriptomics
1
Alignment
1
Genetics
1
RiboSeq
1
styler
1
MassSpectrometry
1
SNP
1
Proteomics
1
github
1
WorkflowManagement
1
biocthis
1
actions
1
DNAMethylation
1
MotifAnnotation
1
MultidimensionalScaling
1
derfinder
1
deseq2
1
edger
1
regionreport
1
rmarkdown
1
rnaseq
1
DNaseSeq
1
GeneRegulation
1
HistoneModification
1
PeakDetection
1
RIPSeq
1
GenomeAnnotation
1
ReproducibleResearch
1