bioconductor.org "ReportWriting" keyword
View the packages on the bioconductor.org package registry that are tagged with the "ReportWriting" keyword.
Top 5.9% on bioconductor.org
6 versions - Latest release: 29 days ago - 3 dependent packages - 239 thousand downloads total - 53 stars on GitHub - 1 maintainer
systemPipeR 2.14.2
systemPipeR: Workflow Environment for Data Analysis and Report Generation6 versions - Latest release: 29 days ago - 3 dependent packages - 239 thousand downloads total - 53 stars on GitHub - 1 maintainer
Top 5.2% on bioconductor.org
9 versions - Latest release: 2 months ago - 1 dependent package - 75 thousand downloads total - 25 stars on GitHub - 1 maintainer
DEGreport 1.44.0
Report of DEG analysis9 versions - Latest release: 2 months ago - 1 dependent package - 75 thousand downloads total - 25 stars on GitHub - 1 maintainer
biocthis 1.18.0
Automate package and project setup for Bioconductor packages5 versions - Latest release: 2 months ago - 2 dependent packages - 25.3 thousand downloads total - 53 stars on GitHub - 1 maintainer
ngsReports 2.10.0
Load FastqQC reports and other NGS related files6 versions - Latest release: 2 months ago - 12.6 thousand downloads total - 22 stars on GitHub - 1 maintainer
GeDi 1.4.0
Defining and visualizing the distances between different genesets4 versions - Latest release: 3 months ago - 3.29 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 2.7% on bioconductor.org
5 versions - Latest release: 2 months ago - 2 dependent packages - 131 thousand downloads total - 1 maintainer
affycoretools 1.80.0
Functions useful for those doing repetitive analyses with Affymetrix GeneChips5 versions - Latest release: 2 months ago - 2 dependent packages - 131 thousand downloads total - 1 maintainer
Top 6.4% on bioconductor.org
5 versions - Latest release: 2 months ago - 2 dependent packages - 386 thousand downloads total - 1 maintainer
annaffy 1.80.0
Annotation tools for Affymetrix biological metadata5 versions - Latest release: 2 months ago - 2 dependent packages - 386 thousand downloads total - 1 maintainer
Top 6.1% on bioconductor.org
5 versions - Latest release: 2 months ago - 5 dependent packages - 62.5 thousand downloads total - 19 stars on GitHub - 1 maintainer
EnrichmentBrowser 2.38.0
Seamless navigation through combined results of set-based and network-based enrichment analysis5 versions - Latest release: 2 months ago - 5 dependent packages - 62.5 thousand downloads total - 19 stars on GitHub - 1 maintainer
qcmetrics 1.46.0
A Framework for Quality Control6 versions - Latest release: 3 months ago - 1 dependent package - 25 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 6.0% on bioconductor.org
10 versions - Latest release: 2 months ago - 3 dependent packages - 123 thousand downloads total - 68 stars on GitHub - 1 maintainer
tximeta 1.26.1
Transcript Quantification Import with Automatic Metadata10 versions - Latest release: 2 months ago - 3 dependent packages - 123 thousand downloads total - 68 stars on GitHub - 1 maintainer
mosdef 1.4.1
MOSt frequently used and useful Differential Expression Functions4 versions - Latest release: 2 months ago - 5.68 thousand downloads total - 0 stars on GitHub - 1 maintainer
countsimQC 1.26.0
Compare Characteristic Features of Count Data Sets5 versions - Latest release: 2 months ago - 1 dependent package - 15.8 thousand downloads total - 28 stars on GitHub - 1 maintainer
Top 8.7% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 30.2 thousand downloads total - 9 stars on GitHub - 1 maintainer
regionReport 1.42.0
Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results5 versions - Latest release: 3 months ago - 1 dependent package - 30.2 thousand downloads total - 9 stars on GitHub - 1 maintainer
ChromSCape 1.17.0
Analysis of single-cell epigenomics datasets with a Shiny App5 versions - Latest release: 2 months ago - 7.92 thousand downloads total - 14 stars on GitHub - 1 maintainer
GSEABenchmarkeR 1.28.1
Reproducible GSEA Benchmarking6 versions - Latest release: about 2 months ago - 2 dependent packages - 14.3 thousand downloads total - 13 stars on GitHub - 1 maintainer
Top 8.2% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 421 thousand downloads total - 1 maintainer
DynDoc 1.86.0
Dynamic document tools5 versions - Latest release: 3 months ago - 1 dependent package - 421 thousand downloads total - 1 maintainer
signifinder 1.10.0
Collection and implementation of public transcriptional cancer signatures6 versions - Latest release: 3 months ago - 4.48 thousand downloads total - 7 stars on GitHub - 1 maintainer
systemPipeTools 1.16.0
Tools for data visualization5 versions - Latest release: 3 months ago - 6.35 thousand downloads total - 1 maintainer
DeepTarget 1.2.0
Deep characterization of cancer drugs2 versions - Latest release: 3 months ago - 2.29 thousand downloads total - 1 maintainer
easyreporting 1.20.0
Helps creating report for improving Reproducible Computational Research5 versions - Latest release: 3 months ago - 8.56 thousand downloads total - 2 stars on GitHub - 1 maintainer
annmap 1.50.0
Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.5 versions - Latest release: 3 months ago - 25.2 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 9.1% on bioconductor.org
5 versions - Latest release: 3 months ago - 36.2 thousand downloads total - 1 maintainer
Harshlight 1.79.0
A "corrective make-up" program for microarray chips5 versions - Latest release: 3 months ago - 36.2 thousand downloads total - 1 maintainer
metaseqR2 1.20.0
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statisti...5 versions - Latest release: 3 months ago - 9.37 thousand downloads total - 1 maintainer
Top 6.1% on bioconductor.org
5 versions - Latest release: 3 months ago - 68.4 thousand downloads total - 2 maintainers
ChIPQC 1.44.0
Quality metrics for ChIPseq data5 versions - Latest release: 3 months ago - 68.4 thousand downloads total - 2 maintainers
Top 4.3% on bioconductor.org
5 versions - Latest release: 3 months ago - 195 thousand downloads total - 1 stars on GitHub - 1 maintainer
arrayQualityMetrics 3.64.0
Quality metrics report for microarray data sets5 versions - Latest release: 3 months ago - 195 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 9.3% on bioconductor.org
5 versions - Latest release: 3 months ago - 31.8 thousand downloads total - 1 maintainer
xmapbridge 1.66.0
Export plotting files to the xmapBridge for visualisation in X:Map5 versions - Latest release: 3 months ago - 31.8 thousand downloads total - 1 maintainer
CellScore 1.27.0
Tool for Evaluation of Cell Identity from Transcription Profiles5 versions - Latest release: 3 months ago - 11 thousand downloads total - 1 maintainer
BiocWorkflowTools 1.34.0
Tools to aid the development of Bioconductor Workflow packages5 versions - Latest release: 3 months ago - 24.9 thousand downloads total - 1 maintainer
systemPipeShiny 1.18.0
systemPipeShiny: An Interactive Framework for Workflow Management and Visualization5 versions - Latest release: 3 months ago - 8.28 thousand downloads total - 1 maintainer
Top 2.4% on bioconductor.org
5 versions - Latest release: 3 months ago - 2 dependent packages - 266 thousand downloads total - 1 maintainer
DiffBind 3.18.0
Differential Binding Analysis of ChIP-Seq Peak Data5 versions - Latest release: 3 months ago - 2 dependent packages - 266 thousand downloads total - 1 maintainer
tracktables 1.42.0
Build IGV tracks and HTML reports5 versions - Latest release: 3 months ago - 24.6 thousand downloads total - 1 maintainer
Top 7.0% on bioconductor.org
5 versions - Latest release: 3 months ago - 37.7 thousand downloads total - 1 maintainer
SpeCond 1.62.0
Condition specific detection from expression data5 versions - Latest release: 3 months ago - 37.7 thousand downloads total - 1 maintainer
seqArchRplus 1.8.0
Downstream analyses of promoter sequence architectures and HTML report generation5 versions - Latest release: 3 months ago - 4.6 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 3.5% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 157 thousand downloads total - 32 stars on GitHub - 1 maintainer
Glimma 2.18.0
Interactive visualizations for gene expression analysis5 versions - Latest release: 3 months ago - 1 dependent package - 157 thousand downloads total - 32 stars on GitHub - 1 maintainer
MBECS 1.12.0
Evaluation and correction of batch effects in microbiome data-sets5 versions - Latest release: 3 months ago - 7.57 thousand downloads total - 4 stars on GitHub - 1 maintainer
rebook 1.18.0
Re-using Content in Bioconductor Books5 versions - Latest release: 3 months ago - 12.9 thousand downloads total - 1 maintainer
Top 9.4% on bioconductor.org
5 versions - Latest release: 3 months ago - 31.7 thousand downloads total - 1 maintainer
R453Plus1Toolbox 1.58.0
A package for importing and analyzing data from Roche's Genome Sequencer System5 versions - Latest release: 3 months ago - 31.7 thousand downloads total - 1 maintainer
BiocBook 1.6.0
Write, containerize, publish and version Quarto books with Bioconductor4 versions - Latest release: 3 months ago - 4.27 thousand downloads total - 1 maintainer
abseqR 1.26.0
Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries5 versions - Latest release: 3 months ago - 12.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
GeneTonic 3.2.0
Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional ...5 versions - Latest release: 3 months ago - 1 dependent package - 16.5 thousand downloads total - 78 stars on GitHub - 1 maintainer
ideal 2.2.0
Interactive Differential Expression AnaLysis5 versions - Latest release: 3 months ago - 18.9 thousand downloads total - 29 stars on GitHub - 1 maintainer
Top 5.4% on bioconductor.org
5 versions - Latest release: 3 months ago - 2 dependent packages - 59.2 thousand downloads total - 56 stars on GitHub - 1 maintainer
pcaExplorer 3.2.0
Interactive Visualization of RNA-seq Data Using a Principal Components Approach5 versions - Latest release: 3 months ago - 2 dependent packages - 59.2 thousand downloads total - 56 stars on GitHub - 1 maintainer
DMRforPairs 1.38.0 removed
DMRforPairs: identifying Differentially Methylated Regions between unique samples using array bas...2 versions - Latest release: over 1 year ago - 16 thousand downloads total - 1 maintainer
NanoStringQCPro 1.32.0 removed
Quality metrics and data processing methods for NanoString mRNA gene expression data1 version - Latest release: almost 2 years ago - 18.7 thousand downloads total - 1 maintainer
Related Keywords
Software
44
Visualization
22
QualityControl
18
Microarray
14
GeneExpression
14
RNASeq
14
ImmunoOncology
13
DifferentialExpression
12
Sequencing
12
GeneSetEnrichment
10
Transcription
8
Annotation
8
Pathways
7
Infrastructure
7
DataImport
7
Clustering
7
bioconductor
6
r
6
ShinyApps
6
MultipleComparison
6
GO
5
Preprocessing
5
Normalization
5
OneChannel
5
ChIPSeq
5
GUI
4
SingleCell
4
shiny
4
Transcriptomics
4
DifferentialPeakCalling
3
FunctionalGenomics
3
PrincipalComponent
3
ExperimentalDesign
3
DifferentialMethylation
3
ATACSeq
3
MethylSeq
3
BatchEffect
3
user-friendly
3
differential-expression
3
Epigenetics
3
BiomedicalInformatics
3
reproducible-research
3
rna-seq-analysis
3
transcriptome
2
GeneTarget
2
GraphAndNetwork
2
Network
2
NetworkEnrichment
2
rna-seq
2
WorkflowStep
2
Microbiome
2
CellBiology
2
bioconductor-package
2
rstats
2
rna-seq-data
2
Coverage
2
TimeCourse
1
mRNAMicroarray
1
SystemsBiology
1
Regression
1
ProprietaryPlatforms
1
DifferentialSplicing
1
Bayesian
1
AlternativeSplicing
1
Proteomics
1
DNAMethylation
1
principal-components
1
DimensionReduction
1
transcriptomics
1
pathway-analysis
1
gui
1
gene-expression
1
functional-enrichment-analysis
1
data-visualization
1
data-exploration
1
DataRepresentation
1
interactive-visualizations
1
MotifAnnotation
1
RIPSeq
1
PeakDetection
1
HistoneModification
1
GeneRegulation
1
DNaseSeq
1
TwoChannel
1
MassSpectrometry
1
Reactome
1
KEGG
1
usethis
1
styler
1
github
1
biocthis
1
actions
1
smallrna
1
report
1
qc
1
WorkflowManagement
1
SNP
1
RiboSeq
1
Genetics
1
Alignment
1