bioconductor.org "ReportWriting" keyword
View the packages on the bioconductor.org package registry that are tagged with the "ReportWriting" keyword.
seqArchRplus 1.9.0
Downstream analyses of promoter sequence architectures and HTML report generation6 versions - Latest release: about 1 month ago - 5.73 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 2.4% on bioconductor.org
6 versions - Latest release: about 1 month ago - 2 dependent packages - 299 thousand downloads total - 1 maintainer
DiffBind 3.20.0
Differential Binding Analysis of ChIP-Seq Peak Data6 versions - Latest release: about 1 month ago - 2 dependent packages - 299 thousand downloads total - 1 maintainer
tracktables 1.44.0
Build IGV tracks and HTML reports6 versions - Latest release: about 1 month ago - 29.1 thousand downloads total - 1 maintainer
CellScore 1.30.0
Tool for Evaluation of Cell Identity from Transcription Profiles6 versions - Latest release: about 1 month ago - 11.9 thousand downloads total - 1 maintainer
countsimQC 1.28.0
Compare Characteristic Features of Count Data Sets6 versions - Latest release: about 1 month ago - 1 dependent package - 19.2 thousand downloads total - 29 stars on GitHub - 1 maintainer
Top 8.2% on bioconductor.org
6 versions - Latest release: about 2 months ago - 1 dependent package - 461 thousand downloads total - 1 maintainer
DynDoc 1.88.0
Dynamic document tools6 versions - Latest release: about 2 months ago - 1 dependent package - 461 thousand downloads total - 1 maintainer
Top 9.3% on bioconductor.org
6 versions - Latest release: about 1 month ago - 33.8 thousand downloads total - 1 maintainer
xmapbridge 1.68.0
Export plotting files to the xmapBridge for visualisation in X:Map6 versions - Latest release: about 1 month ago - 33.8 thousand downloads total - 1 maintainer
Top 6.4% on bioconductor.org
6 versions - Latest release: about 1 month ago - 2 dependent packages - 393 thousand downloads total - 1 maintainer
annaffy 1.82.0
Annotation tools for Affymetrix biological metadata6 versions - Latest release: about 1 month ago - 2 dependent packages - 393 thousand downloads total - 1 maintainer
rebook 1.20.0
Re-using Content in Bioconductor Books6 versions - Latest release: about 1 month ago - 15.2 thousand downloads total - 1 maintainer
Top 4.3% on bioconductor.org
6 versions - Latest release: about 1 month ago - 213 thousand downloads total - 1 stars on GitHub - 1 maintainer
arrayQualityMetrics 3.65.0
Quality metrics report for microarray data sets6 versions - Latest release: about 1 month ago - 213 thousand downloads total - 1 stars on GitHub - 1 maintainer
easyreporting 1.22.0
Helps creating report for improving Reproducible Computational Research6 versions - Latest release: about 1 month ago - 10.1 thousand downloads total - 2 stars on GitHub - 1 maintainer
BiocBook 1.8.0
Write, containerize, publish and version Quarto books with Bioconductor5 versions - Latest release: about 1 month ago - 5.87 thousand downloads total - 1 maintainer
Top 6.1% on bioconductor.org
6 versions - Latest release: about 1 month ago - 76.1 thousand downloads total - 2 maintainers
ChIPQC 1.45.0
Quality metrics for ChIPseq data6 versions - Latest release: about 1 month ago - 76.1 thousand downloads total - 2 maintainers
Top 3.5% on bioconductor.org
6 versions - Latest release: about 1 month ago - 1 dependent package - 183 thousand downloads total - 34 stars on GitHub - 1 maintainer
Glimma 2.20.0
Interactive visualizations for gene expression analysis6 versions - Latest release: about 1 month ago - 1 dependent package - 183 thousand downloads total - 34 stars on GitHub - 1 maintainer
MBECS 1.14.0
Evaluation and correction of batch effects in microbiome data-sets6 versions - Latest release: about 1 month ago - 9.5 thousand downloads total - 4 stars on GitHub - 1 maintainer
mosdef 1.6.0
MOSt frequently used and useful Differential Expression Functions5 versions - Latest release: about 1 month ago - 8.84 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 6.1% on bioconductor.org
7 versions - Latest release: about 1 month ago - 5 dependent packages - 73.1 thousand downloads total - 19 stars on GitHub - 1 maintainer
EnrichmentBrowser 2.40.0
Seamless navigation through combined results of set-based and network-based enrichment analysis7 versions - Latest release: about 1 month ago - 5 dependent packages - 73.1 thousand downloads total - 19 stars on GitHub - 1 maintainer
abseqR 1.28.0
Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries6 versions - Latest release: about 1 month ago - 15 thousand downloads total - 0 stars on GitHub - 1 maintainer
GeneTonic 3.4.0
Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional ...6 versions - Latest release: about 1 month ago - 1 dependent package - 20.5 thousand downloads total - 78 stars on GitHub - 1 maintainer
Top 7.0% on bioconductor.org
6 versions - Latest release: about 1 month ago - 40 thousand downloads total - 1 maintainer
SpeCond 1.64.0
Condition specific detection from expression data6 versions - Latest release: about 1 month ago - 40 thousand downloads total - 1 maintainer
Top 9.4% on bioconductor.org
6 versions - Latest release: about 1 month ago - 33.9 thousand downloads total - 1 maintainer
R453Plus1Toolbox 1.59.0
A package for importing and analyzing data from Roche's Genome Sequencer System6 versions - Latest release: about 1 month ago - 33.9 thousand downloads total - 1 maintainer
metaseqR2 1.22.0
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statisti...6 versions - Latest release: about 1 month ago - 11.5 thousand downloads total - 1 maintainer
DeepTarget 1.4.0
Deep characterization of cancer drugs3 versions - Latest release: about 2 months ago - 3.47 thousand downloads total - 1 maintainer
Top 2.7% on bioconductor.org
6 versions - Latest release: about 1 month ago - 2 dependent packages - 138 thousand downloads total - 1 maintainer
affycoretools 1.82.0
Functions useful for those doing repetitive analyses with Affymetrix GeneChips6 versions - Latest release: about 1 month ago - 2 dependent packages - 138 thousand downloads total - 1 maintainer
Top 8.7% on bioconductor.org
6 versions - Latest release: about 1 month ago - 1 dependent package - 36.1 thousand downloads total - 10 stars on GitHub - 1 maintainer
regionReport 1.44.0
Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results6 versions - Latest release: about 1 month ago - 1 dependent package - 36.1 thousand downloads total - 10 stars on GitHub - 1 maintainer
Top 5.9% on bioconductor.org
7 versions - Latest release: about 2 months ago - 3 dependent packages - 272 thousand downloads total - 54 stars on GitHub - 1 maintainer
systemPipeR 2.16.0
systemPipeR: Workflow Environment for Data Analysis and Report Generation7 versions - Latest release: about 2 months ago - 3 dependent packages - 272 thousand downloads total - 54 stars on GitHub - 1 maintainer
Top 6.0% on bioconductor.org
13 versions - Latest release: 10 days ago - 3 dependent packages - 174 thousand downloads total - 67 stars on GitHub - 1 maintainer
tximeta 1.28.1
Transcript Quantification Import with Automatic Metadata13 versions - Latest release: 10 days ago - 3 dependent packages - 174 thousand downloads total - 67 stars on GitHub - 1 maintainer
ChromSCape 1.20.0
Analysis of single-cell epigenomics datasets with a Shiny App6 versions - Latest release: about 2 months ago - 9.56 thousand downloads total - 14 stars on GitHub - 1 maintainer
Top 5.4% on bioconductor.org
6 versions - Latest release: about 2 months ago - 2 dependent packages - 65.6 thousand downloads total - 56 stars on GitHub - 1 maintainer
pcaExplorer 3.4.0
Interactive Visualization of RNA-seq Data Using a Principal Components Approach6 versions - Latest release: about 2 months ago - 2 dependent packages - 65.6 thousand downloads total - 56 stars on GitHub - 1 maintainer
GSEABenchmarkeR 1.30.0
Reproducible GSEA Benchmarking7 versions - Latest release: about 2 months ago - 2 dependent packages - 17.4 thousand downloads total - 13 stars on GitHub - 1 maintainer
Top 9.1% on bioconductor.org
6 versions - Latest release: about 2 months ago - 37.7 thousand downloads total - 1 maintainer
Harshlight 1.82.0
A "corrective make-up" program for microarray chips6 versions - Latest release: about 2 months ago - 37.7 thousand downloads total - 1 maintainer
annmap 1.52.0
Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.6 versions - Latest release: about 2 months ago - 27.3 thousand downloads total - 0 stars on GitHub - 1 maintainer
biocthis 1.20.0
Automate package and project setup for Bioconductor packages6 versions - Latest release: about 1 month ago - 2 dependent packages - 33 thousand downloads total - 54 stars on GitHub - 1 maintainer
signifinder 1.12.0
Collection and implementation of public transcriptional cancer signatures7 versions - Latest release: about 2 months ago - 5.82 thousand downloads total - 8 stars on GitHub - 1 maintainer
Top 5.2% on bioconductor.org
10 versions - Latest release: about 2 months ago - 1 dependent package - 86.1 thousand downloads total - 26 stars on GitHub - 1 maintainer
DEGreport 1.46.0
Report of DEG analysis10 versions - Latest release: about 2 months ago - 1 dependent package - 86.1 thousand downloads total - 26 stars on GitHub - 1 maintainer
systemPipeShiny 1.20.0
systemPipeShiny: An Interactive Framework for Workflow Management and Visualization6 versions - Latest release: about 2 months ago - 10.2 thousand downloads total - 1 maintainer
systemPipeTools 1.18.0
Tools for data visualization6 versions - Latest release: about 2 months ago - 7.77 thousand downloads total - 1 maintainer
BiocWorkflowTools 1.36.0
Tools to aid the development of Bioconductor Workflow packages6 versions - Latest release: about 2 months ago - 27.7 thousand downloads total - 1 maintainer
ideal 2.4.0
Interactive Differential Expression AnaLysis6 versions - Latest release: about 2 months ago - 21.4 thousand downloads total - 29 stars on GitHub - 1 maintainer
qcmetrics 1.48.0
A Framework for Quality Control7 versions - Latest release: about 2 months ago - 1 dependent package - 26.7 thousand downloads total - 2 stars on GitHub - 1 maintainer
GeDi 1.6.1
Defining and visualizing the distances between different genesets6 versions - Latest release: 22 days ago - 4.16 thousand downloads total - 1 stars on GitHub - 1 maintainer
ngsReports 2.12.1
Load FastqQC reports and other NGS related files8 versions - Latest release: 29 days ago - 14.7 thousand downloads total - 23 stars on GitHub - 1 maintainer
DMRforPairs 1.38.0 removed
DMRforPairs: identifying Differentially Methylated Regions between unique samples using array bas...2 versions - Latest release: about 2 years ago - 16 thousand downloads total - 1 maintainer
NanoStringQCPro 1.32.0 removed
Quality metrics and data processing methods for NanoString mRNA gene expression data1 version - Latest release: about 2 years ago - 18.7 thousand downloads total - 1 maintainer
Related Keywords
Software
44
Visualization
22
QualityControl
18
GeneExpression
14
Microarray
14
RNASeq
14
ImmunoOncology
13
Sequencing
12
DifferentialExpression
12
GeneSetEnrichment
10
Transcription
8
Annotation
8
Pathways
7
Infrastructure
7
Clustering
7
DataImport
7
bioconductor
6
ShinyApps
6
MultipleComparison
6
r
6
OneChannel
5
Normalization
5
ChIPSeq
5
Preprocessing
5
GO
5
Transcriptomics
4
GUI
4
shiny
4
SingleCell
4
differential-expression
3
BatchEffect
3
reproducible-research
3
rna-seq-analysis
3
user-friendly
3
PrincipalComponent
3
ExperimentalDesign
3
MethylSeq
3
ATACSeq
3
BiomedicalInformatics
3
FunctionalGenomics
3
Epigenetics
3
DifferentialPeakCalling
3
DifferentialMethylation
3
rna-seq
2
rstats
2
Coverage
2
GeneTarget
2
WorkflowStep
2
transcriptome
2
CellBiology
2
rna-seq-data
2
bioconductor-package
2
NetworkEnrichment
2
Network
2
GraphAndNetwork
2
Microbiome
2
biocthis
1
actions
1
u24ca289073
1
principal-components
1
DimensionReduction
1
single-cell
1
epigenomics
1
MotifAnnotation
1
Classification
1
ReproducibleResearch
1
GenomeAnnotation
1
WorkflowManagement
1
SNP
1
RiboSeq
1
Genetics
1
github
1
styler
1
usethis
1
GeneSignaling
1
Spatial
1
qc
1
report
1
smallrna
1
MultidimensionalScaling
1
MassSpectrometry
1
Proteomics
1
KEGG
1
Reactome
1
DNAMethylation
1
mRNAMicroarray
1
data-exploration
1
data-visualization
1
functional-enrichment-analysis
1
gene-expression
1
gui
1
pathway-analysis
1
DNaseSeq
1
transcriptomics
1
GeneRegulation
1
DataRepresentation
1
AlternativeSplicing
1
Bayesian
1
DifferentialSplicing
1
HistoneModification
1