bioconductor.org "ReportWriting" keyword
View the packages on the bioconductor.org package registry that are tagged with the "ReportWriting" keyword.
DeepTarget 1.4.0
Deep characterization of cancer drugs3 versions - Latest release: 3 months ago - 3.75 thousand downloads total - 1 maintainer
Top 8.7% on bioconductor.org
6 versions - Latest release: 2 months ago - 1 dependent package - 36.7 thousand downloads total - 10 stars on GitHub - 1 maintainer
regionReport 1.44.0
Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results6 versions - Latest release: 2 months ago - 1 dependent package - 36.7 thousand downloads total - 10 stars on GitHub - 1 maintainer
Top 5.2% on bioconductor.org
10 versions - Latest release: 3 months ago - 1 dependent package - 88.1 thousand downloads total - 26 stars on GitHub - 1 maintainer
DEGreport 1.46.0
Report of DEG analysis10 versions - Latest release: 3 months ago - 1 dependent package - 88.1 thousand downloads total - 26 stars on GitHub - 1 maintainer
Top 9.1% on bioconductor.org
6 versions - Latest release: 3 months ago - 38.6 thousand downloads total - 1 maintainer
Harshlight 1.82.0
A "corrective make-up" program for microarray chips6 versions - Latest release: 3 months ago - 38.6 thousand downloads total - 1 maintainer
Top 6.4% on bioconductor.org
6 versions - Latest release: 2 months ago - 2 dependent packages - 394 thousand downloads total - 1 maintainer
annaffy 1.82.0
Annotation tools for Affymetrix biological metadata6 versions - Latest release: 2 months ago - 2 dependent packages - 394 thousand downloads total - 1 maintainer
Top 2.7% on bioconductor.org
6 versions - Latest release: 2 months ago - 2 dependent packages - 139 thousand downloads total - 1 maintainer
affycoretools 1.82.0
Functions useful for those doing repetitive analyses with Affymetrix GeneChips6 versions - Latest release: 2 months ago - 2 dependent packages - 139 thousand downloads total - 1 maintainer
BiocBook 1.8.0
Write, containerize, publish and version Quarto books with Bioconductor5 versions - Latest release: 2 months ago - 6.17 thousand downloads total - 1 maintainer
countsimQC 1.28.0
Compare Characteristic Features of Count Data Sets6 versions - Latest release: 2 months ago - 1 dependent package - 22.4 thousand downloads total - 29 stars on GitHub - 1 maintainer
Top 8.2% on bioconductor.org
6 versions - Latest release: 3 months ago - 1 dependent package - 468 thousand downloads total - 1 maintainer
DynDoc 1.88.0
Dynamic document tools6 versions - Latest release: 3 months ago - 1 dependent package - 468 thousand downloads total - 1 maintainer
Top 4.3% on bioconductor.org
7 versions - Latest release: 7 days ago - 214 thousand downloads total - 1 stars on GitHub - 1 maintainer
arrayQualityMetrics 3.66.0
Quality metrics report for microarray data sets7 versions - Latest release: 7 days ago - 214 thousand downloads total - 1 stars on GitHub - 1 maintainer
GSEABenchmarkeR 1.30.0
Reproducible GSEA Benchmarking7 versions - Latest release: 3 months ago - 2 dependent packages - 17.9 thousand downloads total - 13 stars on GitHub - 1 maintainer
CellScore 1.30.0
Tool for Evaluation of Cell Identity from Transcription Profiles6 versions - Latest release: 2 months ago - 12 thousand downloads total - 1 maintainer
rebook 1.20.0
Re-using Content in Bioconductor Books6 versions - Latest release: 2 months ago - 15.6 thousand downloads total - 1 maintainer
Top 7.0% on bioconductor.org
6 versions - Latest release: 2 months ago - 40.5 thousand downloads total - 1 maintainer
SpeCond 1.64.0
Condition specific detection from expression data6 versions - Latest release: 2 months ago - 40.5 thousand downloads total - 1 maintainer
Top 9.4% on bioconductor.org
7 versions - Latest release: 7 days ago - 34.3 thousand downloads total - 1 maintainer
R453Plus1Toolbox 1.60.0
A package for importing and analyzing data from Roche's Genome Sequencer System7 versions - Latest release: 7 days ago - 34.3 thousand downloads total - 1 maintainer
easyreporting 1.22.0
Helps creating report for improving Reproducible Computational Research6 versions - Latest release: 2 months ago - 10.4 thousand downloads total - 2 stars on GitHub - 1 maintainer
systemPipeShiny 1.20.0
systemPipeShiny: An Interactive Framework for Workflow Management and Visualization6 versions - Latest release: 3 months ago - 10.5 thousand downloads total - 1 maintainer
Top 5.4% on bioconductor.org
6 versions - Latest release: 3 months ago - 2 dependent packages - 66.4 thousand downloads total - 56 stars on GitHub - 1 maintainer
pcaExplorer 3.4.0
Interactive Visualization of RNA-seq Data Using a Principal Components Approach6 versions - Latest release: 3 months ago - 2 dependent packages - 66.4 thousand downloads total - 56 stars on GitHub - 1 maintainer
Top 5.9% on bioconductor.org
8 versions - Latest release: 7 days ago - 3 dependent packages - 276 thousand downloads total - 54 stars on GitHub - 1 maintainer
systemPipeR 2.16.3
systemPipeR: Workflow Environment for Data Analysis and Report Generation8 versions - Latest release: 7 days ago - 3 dependent packages - 276 thousand downloads total - 54 stars on GitHub - 1 maintainer
biocthis 1.20.0
Automate package and project setup for Bioconductor packages6 versions - Latest release: 3 months ago - 2 dependent packages - 37.6 thousand downloads total - 54 stars on GitHub - 1 maintainer
GeneTonic 3.4.0
Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional ...6 versions - Latest release: 2 months ago - 1 dependent package - 21.2 thousand downloads total - 78 stars on GitHub - 1 maintainer
Top 6.1% on bioconductor.org
6 versions - Latest release: 2 months ago - 76.8 thousand downloads total - 2 maintainers
ChIPQC 1.45.0
Quality metrics for ChIPseq data6 versions - Latest release: 2 months ago - 76.8 thousand downloads total - 2 maintainers
Top 6.0% on bioconductor.org
14 versions - Latest release: 7 days ago - 3 dependent packages - 183 thousand downloads total - 67 stars on GitHub - 1 maintainer
tximeta 1.28.2
Transcript Quantification Import with Automatic Metadata14 versions - Latest release: 7 days ago - 3 dependent packages - 183 thousand downloads total - 67 stars on GitHub - 1 maintainer
MBECS 1.14.0
Evaluation and correction of batch effects in microbiome data-sets6 versions - Latest release: 2 months ago - 9.83 thousand downloads total - 4 stars on GitHub - 1 maintainer
GeDi 1.6.1
Defining and visualizing the distances between different genesets6 versions - Latest release: about 2 months ago - 5.04 thousand downloads total - 1 stars on GitHub - 1 maintainer
annmap 1.52.0
Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.6 versions - Latest release: 3 months ago - 27.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
tracktables 1.44.0
Build IGV tracks and HTML reports6 versions - Latest release: 2 months ago - 29.6 thousand downloads total - 1 maintainer
qcmetrics 1.48.0
A Framework for Quality Control7 versions - Latest release: 3 months ago - 1 dependent package - 28 thousand downloads total - 2 stars on GitHub - 1 maintainer
ngsReports 2.12.1
Load FastqQC reports and other NGS related files8 versions - Latest release: 2 months ago - 15.5 thousand downloads total - 23 stars on GitHub - 1 maintainer
BiocWorkflowTools 1.36.0
Tools to aid the development of Bioconductor Workflow packages6 versions - Latest release: 3 months ago - 28.1 thousand downloads total - 1 maintainer
signifinder 1.12.0
Collection and implementation of public transcriptional cancer signatures7 versions - Latest release: 3 months ago - 6.12 thousand downloads total - 8 stars on GitHub - 1 maintainer
systemPipeTools 1.18.0
Tools for data visualization6 versions - Latest release: 3 months ago - 8.06 thousand downloads total - 1 maintainer
ideal 2.4.0
Interactive Differential Expression AnaLysis6 versions - Latest release: 3 months ago - 22.4 thousand downloads total - 29 stars on GitHub - 1 maintainer
Top 3.5% on bioconductor.org
6 versions - Latest release: 2 months ago - 1 dependent package - 184 thousand downloads total - 34 stars on GitHub - 1 maintainer
Glimma 2.20.0
Interactive visualizations for gene expression analysis6 versions - Latest release: 2 months ago - 1 dependent package - 184 thousand downloads total - 34 stars on GitHub - 1 maintainer
seqArchRplus 1.9.0
Downstream analyses of promoter sequence architectures and HTML report generation6 versions - Latest release: 2 months ago - 5.73 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 2.4% on bioconductor.org
6 versions - Latest release: 2 months ago - 2 dependent packages - 299 thousand downloads total - 1 maintainer
DiffBind 3.20.0
Differential Binding Analysis of ChIP-Seq Peak Data6 versions - Latest release: 2 months ago - 2 dependent packages - 299 thousand downloads total - 1 maintainer
Top 9.3% on bioconductor.org
6 versions - Latest release: 2 months ago - 33.8 thousand downloads total - 1 maintainer
xmapbridge 1.68.0
Export plotting files to the xmapBridge for visualisation in X:Map6 versions - Latest release: 2 months ago - 33.8 thousand downloads total - 1 maintainer
mosdef 1.6.0
MOSt frequently used and useful Differential Expression Functions5 versions - Latest release: 3 months ago - 8.84 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 6.1% on bioconductor.org
7 versions - Latest release: 2 months ago - 5 dependent packages - 73.1 thousand downloads total - 19 stars on GitHub - 1 maintainer
EnrichmentBrowser 2.40.0
Seamless navigation through combined results of set-based and network-based enrichment analysis7 versions - Latest release: 2 months ago - 5 dependent packages - 73.1 thousand downloads total - 19 stars on GitHub - 1 maintainer
abseqR 1.28.0
Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries6 versions - Latest release: 3 months ago - 15 thousand downloads total - 0 stars on GitHub - 1 maintainer
metaseqR2 1.22.0
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statisti...6 versions - Latest release: 2 months ago - 11.5 thousand downloads total - 1 maintainer
ChromSCape 1.20.0
Analysis of single-cell epigenomics datasets with a Shiny App6 versions - Latest release: 3 months ago - 9.56 thousand downloads total - 14 stars on GitHub - 1 maintainer
DMRforPairs 1.38.0 removed
DMRforPairs: identifying Differentially Methylated Regions between unique samples using array bas...2 versions - Latest release: about 2 years ago - 16 thousand downloads total - 1 maintainer
NanoStringQCPro 1.32.0 removed
Quality metrics and data processing methods for NanoString mRNA gene expression data1 version - Latest release: over 2 years ago - 18.7 thousand downloads total - 1 maintainer
Related Keywords
Software
44
Visualization
22
QualityControl
18
GeneExpression
14
Microarray
14
RNASeq
14
ImmunoOncology
13
DifferentialExpression
12
Sequencing
12
GeneSetEnrichment
10
Annotation
8
Transcription
8
DataImport
7
Clustering
7
Pathways
7
Infrastructure
7
bioconductor
6
r
6
ShinyApps
6
MultipleComparison
6
Preprocessing
5
OneChannel
5
ChIPSeq
5
Normalization
5
GO
5
shiny
4
GUI
4
Transcriptomics
4
SingleCell
4
ExperimentalDesign
3
PrincipalComponent
3
reproducible-research
3
rna-seq-analysis
3
user-friendly
3
Epigenetics
3
MethylSeq
3
ATACSeq
3
DifferentialPeakCalling
3
BatchEffect
3
DifferentialMethylation
3
differential-expression
3
FunctionalGenomics
3
BiomedicalInformatics
3
Network
2
NetworkEnrichment
2
bioconductor-package
2
CellBiology
2
GraphAndNetwork
2
rstats
2
GeneTarget
2
Coverage
2
rna-seq
2
transcriptome
2
WorkflowStep
2
Microbiome
2
rna-seq-data
2
Alignment
1
MotifAnnotation
1
ReproducibleResearch
1
KEGG
1
Reactome
1
interactive-visualizations
1
MassSpectrometry
1
MultidimensionalScaling
1
Proteomics
1
Spatial
1
GeneSignaling
1
mRNAMicroarray
1
DNAMethylation
1
single-cell
1
epigenomics
1
Classification
1
TimeCourse
1
SystemsBiology
1
Regression
1
ProprietaryPlatforms
1
DifferentialSplicing
1
Bayesian
1
AlternativeSplicing
1
RIPSeq
1
PeakDetection
1
HistoneModification
1
GeneRegulation
1
DNaseSeq
1
principal-components
1
DimensionReduction
1
DataRepresentation
1
u24ca289073
1
TwoChannel
1
smallrna
1
report
1
qc
1
rnaseq
1
rmarkdown
1
regionreport
1
edger
1
deseq2
1
derfinder
1
GenePrediction
1
CRISPR
1