Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "ReportWriting" keyword
Top 3.5% on bioconductor.org
3 versions - Latest release: 25 days ago - 1 dependent package - 135 thousand downloads total - 23 stars on GitHub - 1 maintainer
Glimma 2.14.0
Interactive visualizations for gene expression analysis3 versions - Latest release: 25 days ago - 1 dependent package - 135 thousand downloads total - 23 stars on GitHub - 1 maintainer
Top 5.4% on bioconductor.org
3 versions - Latest release: about 1 month ago - 2 dependent packages - 50.1 thousand downloads total - 52 stars on GitHub - 1 maintainer
pcaExplorer 2.30.0
Interactive Visualization of RNA-seq Data Using a Principal Components Approach3 versions - Latest release: about 1 month ago - 2 dependent packages - 50.1 thousand downloads total - 52 stars on GitHub - 1 maintainer
GSEABenchmarkeR 1.24.0
Reproducible GSEA Benchmarking3 versions - Latest release: about 1 month ago - 2 dependent packages - 9.59 thousand downloads total - 13 stars on GitHub - 1 maintainer
ideal 1.28.0
Interactive Differential Expression AnaLysis3 versions - Latest release: about 1 month ago - 14.6 thousand downloads total - 29 stars on GitHub - 1 maintainer
mosdef 1.0.0
MOSt frequently used and useful Differential Expression Functions1 version - Latest release: about 1 month ago - 0 stars on GitHub - 1 maintainer
Top 6.1% on bioconductor.org
3 versions - Latest release: 7 months ago - 5 dependent packages - 50.5 thousand downloads total - 19 stars on GitHub - 1 maintainer
EnrichmentBrowser 2.32.0
Seamless navigation through combined results of set-based and network-based enrichment analysis3 versions - Latest release: 7 months ago - 5 dependent packages - 50.5 thousand downloads total - 19 stars on GitHub - 1 maintainer
ChromSCape 1.12.0
Analysis of single-cell epigenomics datasets with a Shiny App3 versions - Latest release: 7 months ago - 4.34 thousand downloads total - 14 stars on GitHub - 1 maintainer
annmap 1.44.0
Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.3 versions - Latest release: 6 months ago - 19.3 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 6.4% on bioconductor.org
3 versions - Latest release: 7 months ago - 2 dependent packages - 375 thousand downloads total - 1 maintainer
annaffy 1.74.0
Annotation tools for Affymetrix biological metadata3 versions - Latest release: 7 months ago - 2 dependent packages - 375 thousand downloads total - 1 maintainer
Top 8.2% on bioconductor.org
3 versions - Latest release: 7 months ago - 1 dependent package - 392 thousand downloads total - 1 maintainer
DynDoc 1.80.0
Dynamic document tools3 versions - Latest release: 7 months ago - 1 dependent package - 392 thousand downloads total - 1 maintainer
BiocBook 1.0.0
Write, containerize, publish and version Quarto books with Bioconductor2 versions - Latest release: 7 months ago - 1.05 thousand downloads total - 1 maintainer
Top 8.7% on bioconductor.org
3 versions - Latest release: 6 months ago - 1 dependent package - 24.6 thousand downloads total - 9 stars on GitHub - 1 maintainer
regionReport 1.36.0
Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results3 versions - Latest release: 6 months ago - 1 dependent package - 24.6 thousand downloads total - 9 stars on GitHub - 1 maintainer
MBECS 1.6.0
Evaluation and correction of batch effects in microbiome data-sets3 versions - Latest release: 6 months ago - 2.63 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 7.0% on bioconductor.org
3 versions - Latest release: 7 months ago - 32.8 thousand downloads total - 1 maintainer
SpeCond 1.56.0
Condition specific detection from expression data3 versions - Latest release: 7 months ago - 32.8 thousand downloads total - 1 maintainer
abseqR 1.20.0
Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries3 versions - Latest release: 7 months ago - 7.28 thousand downloads total - 0 stars on GitHub - 1 maintainer
DMRforPairs 1.38.0 removed
DMRforPairs: identifying Differentially Methylated Regions between unique samples using array bas...2 versions - Latest release: 7 months ago - 16 thousand downloads total - 1 maintainer
Top 6.1% on bioconductor.org
3 versions - Latest release: 7 months ago - 58.3 thousand downloads total - 2 maintainers
ChIPQC 1.38.0
Quality metrics for ChIPseq data3 versions - Latest release: 7 months ago - 58.3 thousand downloads total - 2 maintainers
Top 9.3% on bioconductor.org
3 versions - Latest release: 7 months ago - 26.2 thousand downloads total - 1 maintainer
xmapbridge 1.60.0
Export plotting files to the xmapBridge for visualisation in X:Map3 versions - Latest release: 7 months ago - 26.2 thousand downloads total - 1 maintainer
tracktables 1.36.0
Build IGV tracks and HTML reports3 versions - Latest release: 7 months ago - 18.2 thousand downloads total - 1 maintainer
rebook 1.12.0
Re-using Content in Bioconductor Books3 versions - Latest release: 7 months ago - 8.22 thousand downloads total - 1 maintainer
Top 9.1% on bioconductor.org
3 versions - Latest release: 7 months ago - 30.3 thousand downloads total - 1 maintainer
Harshlight 1.74.0
A "corrective make-up" program for microarray chips3 versions - Latest release: 7 months ago - 30.3 thousand downloads total - 1 maintainer
BiocWorkflowTools 1.28.0
Tools to aid the development of Bioconductor Workflow packages3 versions - Latest release: 7 months ago - 17.9 thousand downloads total - 1 maintainer
systemPipeShiny 1.12.0
systemPipeShiny: An Interactive Framework for Workflow Management and Visualization3 versions - Latest release: 7 months ago - 4.34 thousand downloads total - 1 maintainer
Top 9.4% on bioconductor.org
3 versions - Latest release: 7 months ago - 26.8 thousand downloads total - 1 maintainer
R453Plus1Toolbox 1.52.0
A package for importing and analyzing data from Roche's Genome Sequencer System3 versions - Latest release: 7 months ago - 26.8 thousand downloads total - 1 maintainer
seqArchRplus 1.2.0
Downstream analyses of promoter sequence architectures and HTML report generation3 versions - Latest release: 7 months ago - 1.51 thousand downloads total - 0 stars on GitHub - 1 maintainer
systemPipeTools 1.10.0
Tools for data visualization3 versions - Latest release: 7 months ago - 2.93 thousand downloads total - 1 maintainer
CellScore 1.22.0
Tool for Evaluation of Cell Identity from Transcription Profiles3 versions - Latest release: 7 months ago - 7.15 thousand downloads total - 1 maintainer
metaseqR2 1.14.0
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statisti...3 versions - Latest release: 7 months ago - 5.12 thousand downloads total - 1 maintainer
easyreporting 1.14.0
Helps creating report for improving Reproducible Computational Research3 versions - Latest release: 7 months ago - 4.6 thousand downloads total - 2 stars on GitHub - 1 maintainer
signifinder 1.4.0
Collection and implementation of public transcriptional cancer signatures3 versions - Latest release: 6 months ago - 1.7 thousand downloads total - 5 stars on GitHub - 1 maintainer
GeDi 1.0.0
Defining and visualizing the distances between different genesets1 version - Latest release: about 1 month ago - 148 downloads total - 1 stars on GitHub - 1 maintainer
countsimQC 1.22.0
Compare Characteristic Features of Count Data Sets3 versions - Latest release: about 1 month ago - 1 dependent package - 9 thousand downloads total - 27 stars on GitHub - 1 maintainer
Top 6.0% on bioconductor.org
7 versions - Latest release: 20 days ago - 3 dependent packages - 93 thousand downloads total - 64 stars on GitHub - 1 maintainer
tximeta 1.22.1
Transcript Quantification Import with Automatic Metadata7 versions - Latest release: 20 days ago - 3 dependent packages - 93 thousand downloads total - 64 stars on GitHub - 1 maintainer
Top 5.2% on bioconductor.org
6 versions - Latest release: 21 days ago - 1 dependent package - 58.6 thousand downloads total - 22 stars on GitHub - 1 maintainer
DEGreport 1.40.0
Report of DEG analysis6 versions - Latest release: 21 days ago - 1 dependent package - 58.6 thousand downloads total - 22 stars on GitHub - 1 maintainer
GeneTonic 2.8.0
Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional ...3 versions - Latest release: about 1 month ago - 1 dependent package - 10 thousand downloads total - 75 stars on GitHub - 1 maintainer
Top 2.7% on bioconductor.org
3 versions - Latest release: 25 days ago - 2 dependent packages - 119 thousand downloads total - 1 maintainer
affycoretools 1.76.0
Functions useful for those doing repetitive analyses with Affymetrix GeneChips3 versions - Latest release: 25 days ago - 2 dependent packages - 119 thousand downloads total - 1 maintainer
Top 5.9% on bioconductor.org
3 versions - Latest release: 25 days ago - 3 dependent packages - 204 thousand downloads total - 1 maintainer
systemPipeR 2.10.0
systemPipeR: workflow management and report generation environment3 versions - Latest release: 25 days ago - 3 dependent packages - 204 thousand downloads total - 1 maintainer
Top 2.4% on bioconductor.org
3 versions - Latest release: 25 days ago - 2 dependent packages - 227 thousand downloads total - 1 maintainer
DiffBind 3.14.0
Differential Binding Analysis of ChIP-Seq Peak Data3 versions - Latest release: 25 days ago - 2 dependent packages - 227 thousand downloads total - 1 maintainer
Top 4.3% on bioconductor.org
3 versions - Latest release: 26 days ago - 181 thousand downloads total - 1 stars on GitHub - 1 maintainer
arrayQualityMetrics 3.60.0
Quality metrics report for microarray data sets3 versions - Latest release: 26 days ago - 181 thousand downloads total - 1 stars on GitHub - 1 maintainer
ngsReports 2.6.0
Load FastqQC reports and other NGS related files3 versions - Latest release: about 1 month ago - 7.68 thousand downloads total - 20 stars on GitHub - 1 maintainer
qcmetrics 1.42.0
A Framework for Quality Control4 versions - Latest release: about 1 month ago - 1 dependent package - 19.4 thousand downloads total - 2 stars on GitHub - 1 maintainer
biocthis 1.14.0
Automate package and project setup for Bioconductor packages3 versions - Latest release: about 1 month ago - 2 dependent packages - 16.4 thousand downloads total - 49 stars on GitHub - 1 maintainer
NanoStringQCPro 1.32.0 removed
Quality metrics and data processing methods for NanoString mRNA gene expression data1 version - Latest release: 8 months ago - 18.7 thousand downloads total - 1 maintainer
Related Keywords
Software
43
Visualization
22
QualityControl
18
Microarray
14
GeneExpression
13
RNASeq
13
Sequencing
12
ImmunoOncology
12
DifferentialExpression
11
GeneSetEnrichment
9
Annotation
8
Transcription
8
Clustering
7
Infrastructure
7
DataImport
7
r
6
Pathways
6
MultipleComparison
6
bioconductor
6
ShinyApps
6
OneChannel
5
Preprocessing
5
Normalization
5
ChIPSeq
5
GO
5
GUI
4
SingleCell
4
shiny
4
Transcriptomics
4
BatchEffect
3
FunctionalGenomics
3
BiomedicalInformatics
3
DifferentialPeakCalling
3
Epigenetics
3
MethylSeq
3
DifferentialMethylation
3
ExperimentalDesign
3
ATACSeq
3
differential-expression
3
PrincipalComponent
3
user-friendly
3
reproducible-research
3
rna-seq-analysis
3
WorkflowStep
2
CellBiology
2
Microbiome
2
rstats
2
Coverage
2
bioconductor-package
2
rna-seq-data
2
transcriptome
2
rna-seq
2
NetworkEnrichment
2
Network
2
GraphAndNetwork
2
mRNAMicroarray
1
Alignment
1
transcriptomics
1
pathway-analysis
1
gui
1
gene-expression
1
github
1
functional-enrichment-analysis
1
data-visualization
1
data-exploration
1
smallrna
1
report
1
qc
1
interactive-visualizations
1
Genetics
1
RiboSeq
1
SNP
1
WorkflowManagement
1
DNaseSeq
1
usethis
1
GeneRegulation
1
HistoneModification
1
PeakDetection
1
RIPSeq
1
TwoChannel
1
MassSpectrometry
1
Proteomics
1
styler
1
biocthis
1
actions
1
DimensionReduction
1
principal-components
1
Classification
1
epigenomics
1
single-cell
1
derfinder
1
deseq2
1
edger
1
regionreport
1
rmarkdown
1
rnaseq
1
DNAMethylation
1
DataRepresentation
1
MotifAnnotation
1
MultidimensionalScaling
1