bioconductor.org "SequenceMatching" keyword
View the packages on the bioconductor.org package registry that are tagged with the "SequenceMatching" keyword.
Top 0.2% on bioconductor.org
10 versions - Latest release: 3 months ago - 333 dependent packages - 7.64 million downloads total - 1 maintainer
Biostrings 2.76.0
Efficient manipulation of biological strings10 versions - Latest release: 3 months ago - 333 dependent packages - 7.64 million downloads total - 1 maintainer
Top 0.8% on bioconductor.org
7 versions - Latest release: 3 months ago - 129 dependent packages - 2.39 million downloads total - 1 maintainer
BSgenome 1.76.0
Software infrastructure for efficient representation of full genomes and their SNPs7 versions - Latest release: 3 months ago - 129 dependent packages - 2.39 million downloads total - 1 maintainer
Top 1.8% on bioconductor.org
5 versions - Latest release: 3 months ago - 15 dependent packages - 429 thousand downloads total - 4 stars on GitHub - 1 maintainer
seqLogo 1.74.0
Sequence logos for DNA sequence alignments5 versions - Latest release: 3 months ago - 15 dependent packages - 429 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 1.8% on bioconductor.org
7 versions - Latest release: 3 months ago - 14 dependent packages - 363 thousand downloads total - 2 maintainers
Rsubread 2.22.1
Mapping, quantification and variant analysis of sequencing data7 versions - Latest release: 3 months ago - 14 dependent packages - 363 thousand downloads total - 2 maintainers
MotifPeeker 1.0.0
Benchmarking Epigenomic Profiling Methods Using Motif Enrichment1 version - Latest release: 3 months ago - 1.48 thousand downloads total - 2 stars on GitHub - 1 maintainer
memes 1.16.0
motif matching, comparison, and de novo discovery using the MEME Suite5 versions - Latest release: 3 months ago - 17.2 thousand downloads total - 43 stars on GitHub - 1 maintainer
HelloRanges 1.34.0
Introduce *Ranges to bedtools users5 versions - Latest release: 2 months ago - 2 dependent packages - 20.6 thousand downloads total - 1 maintainer
TVTB 1.34.0
TVTB: The VCF Tool Box6 versions - Latest release: 2 months ago - 13.5 thousand downloads total - 2 stars on GitHub - 1 maintainer
scanMiRApp 1.14.0
scanMiR shiny application5 versions - Latest release: 2 months ago - 6.49 thousand downloads total - 1 maintainer
scanMiR 1.14.0
scanMiR6 versions - Latest release: 2 months ago - 1 dependent package - 7.26 thousand downloads total - 1 maintainer
SimFFPE 1.20.0
NGS Read Simulator for FFPE Tissue5 versions - Latest release: 3 months ago - 7.64 thousand downloads total - 1 maintainer
ipdDb 1.26.0
IPD IMGT/HLA and IPD KIR database for Homo sapiens5 versions - Latest release: 2 months ago - 11.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 5.0% on bioconductor.org
5 versions - Latest release: 3 months ago - 2 dependent packages - 73.6 thousand downloads total - 1 maintainer
seqPattern 1.40.0
Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences5 versions - Latest release: 3 months ago - 2 dependent packages - 73.6 thousand downloads total - 1 maintainer
EDIRquery 1.8.0
Query the EDIR Database For Specific Gene5 versions - Latest release: 3 months ago - 4.32 thousand downloads total - 1 maintainer
ChIPanalyser 1.30.0
ChIPanalyser: Predicting Transcription Factor Binding Sites5 versions - Latest release: 3 months ago - 13.1 thousand downloads total - 1 maintainer
rRDP 1.42.0
Interface to the RDP Classifier5 versions - Latest release: 3 months ago - 18.9 thousand downloads total - 3 stars on GitHub - 1 maintainer
motifTestR 1.4.0
Perform key tests for binding motifs in sequence data6 versions - Latest release: 2 months ago - 3.88 thousand downloads total - 1 stars on GitHub - 1 maintainer
Basic4Cseq 1.44.0
Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data5 versions - Latest release: 3 months ago - 26.7 thousand downloads total - 1 maintainer
Top 6.2% on bioconductor.org
5 versions - Latest release: 3 months ago - 2 dependent packages - 46.2 thousand downloads total - 1 maintainer
PWMEnrich 4.44.0
PWM enrichment analysis5 versions - Latest release: 3 months ago - 2 dependent packages - 46.2 thousand downloads total - 1 maintainer
IMMAN 1.28.0
Interlog protein network reconstruction by Mapping and Mining ANalysis5 versions - Latest release: 3 months ago - 11.4 thousand downloads total - 1 maintainer
hapFabia 1.50.0
hapFabia: Identification of very short segments of identity by descent (IBD) characterized by rar...5 versions - Latest release: 3 months ago - 26.7 thousand downloads total - 1 maintainer
BSgenomeForge 1.8.0
Forge your own BSgenome data package8 versions - Latest release: 3 months ago - 1 dependent package - 13.3 thousand downloads total - 1 maintainer
Motif2Site 1.12.0
Detect binding sites from motifs and ChIP-seq experiments, and compare binding sites across condi...5 versions - Latest release: 3 months ago - 5.55 thousand downloads total - 0 stars on GitHub - 1 maintainer
DominoEffect 1.28.0
Identification and Annotation of Protein Hotspot Residues5 versions - Latest release: 3 months ago - 11.5 thousand downloads total - 2 maintainers
rBLAST 1.4.0
R Interface for the Basic Local Alignment Search Tool3 versions - Latest release: 2 months ago - 5.7 thousand downloads total - 111 stars on GitHub - 1 maintainer
Top 5.9% on bioconductor.org
5 versions - Latest release: 3 months ago - 53.3 thousand downloads total - 1 maintainer
muscle 3.50.0
Multiple Sequence Alignment with MUSCLE5 versions - Latest release: 3 months ago - 53.3 thousand downloads total - 1 maintainer
scoup 1.2.0
Simulate Codons with Darwinian Selection Modelled as an OU Process2 versions - Latest release: 3 months ago - 1.63 thousand downloads total - 0 stars on GitHub - 1 maintainer
Structstrings 1.24.0
Implementation of the dot bracket annotations with Biostrings6 versions - Latest release: 3 months ago - 3 dependent packages - 14.1 thousand downloads total - 5 stars on GitHub - 1 maintainer
MethTargetedNGS 1.40.0
Perform Methylation Analysis on Next Generation Sequencing Data5 versions - Latest release: 3 months ago - 15.8 thousand downloads total - 1 maintainer
motifcounter 1.32.0
R package for analysing TFBSs in DNA sequences5 versions - Latest release: 3 months ago - 24.1 thousand downloads total - 1 maintainer
CRISPRseek 1.48.0
Design of guide RNAs in CRISPR genome-editing systems5 versions - Latest release: 3 months ago - 3 dependent packages - 34.1 thousand downloads total - 1 maintainer
FastqCleaner 1.26.0
A Shiny Application for Quality Control, Filtering and Trimming of FASTQ Files5 versions - Latest release: 3 months ago - 13.8 thousand downloads total - 1 maintainer
Top 3.6% on bioconductor.org
5 versions - Latest release: 3 months ago - 10 dependent packages - 125 thousand downloads total - 1 maintainer
motifStack 1.52.0
Plot stacked logos for single or multiple DNA, RNA and amino acid sequence5 versions - Latest release: 3 months ago - 10 dependent packages - 125 thousand downloads total - 1 maintainer
XNAString 1.15.0
Efficient Manipulation of Modified Oligonucleotide Sequences5 versions - Latest release: 3 months ago - 6.61 thousand downloads total - 1 maintainer
rprimer 1.12.0
Design Degenerate Oligos from a Multiple DNA Sequence Alignment5 versions - Latest release: 3 months ago - 6.38 thousand downloads total - 3 stars on GitHub - 1 maintainer
KinSwingR 1.26.0
KinSwingR: network-based kinase activity prediction5 versions - Latest release: 3 months ago - 9.46 thousand downloads total - 1 maintainer
QSutils 1.26.0
Quasispecies Diversity5 versions - Latest release: 3 months ago - 24.9 thousand downloads total - 1 maintainer
triplex 1.48.0
Search and visualize intramolecular triplex-forming sequences in DNA5 versions - Latest release: 3 months ago - 24.3 thousand downloads total - 1 maintainer
DiffLogo 2.32.0
DiffLogo: A comparative visualisation of biooligomer motifs5 versions - Latest release: 3 months ago - 17.3 thousand downloads total - 8 stars on GitHub
pqsfinder 2.24.0
Identification of potential quadruplex forming sequences5 versions - Latest release: 3 months ago - 18.1 thousand downloads total - 1 maintainer
packFinder 1.20.0
de novo Annotation of Pack-TYPE Transposable Elements5 versions - Latest release: 3 months ago - 8.4 thousand downloads total - 7 stars on GitHub - 1 maintainer
Top 5.5% on bioconductor.org
5 versions - Latest release: 3 months ago - 54.5 thousand downloads total - 1 maintainer
MEDIPS 1.60.0
DNA IP-seq data analysis5 versions - Latest release: 3 months ago - 54.5 thousand downloads total - 1 maintainer
pwalign 1.4.0
Perform pairwise sequence alignments3 versions - Latest release: 3 months ago - 9 dependent packages - 136 thousand downloads total - 1 maintainer
heatmaps 1.32.0
Flexible Heatmaps for Functional Genomics and Sequence Features5 versions - Latest release: 3 months ago - 1 dependent package - 34.7 thousand downloads total - 1 maintainer
SICtools 1.38.0
Find SNV/Indel differences between two bam files with near relationship5 versions - Latest release: 3 months ago - 14.7 thousand downloads total - 1 maintainer
Top 7.6% on bioconductor.org
5 versions - Latest release: 3 months ago - 36 thousand downloads total - 1 maintainer
REDseq 1.54.0
Analysis of high-throughput sequencing data processed by restriction enzyme digestion5 versions - Latest release: 3 months ago - 36 thousand downloads total - 1 maintainer
periodicDNA 1.18.0
Set of tools to identify periodic occurrences of k-mers in DNA sequences5 versions - Latest release: 3 months ago - 7.21 thousand downloads total - 6 stars on GitHub - 1 maintainer
RRHO 1.48.0
Inference on agreement between ordered lists5 versions - Latest release: 3 months ago - 25.4 thousand downloads total - 1 maintainer
bcSeq 1.30.0
Fast Sequence Mapping in High-Throughput shRNA and CRISPR Screens5 versions - Latest release: 3 months ago - 12.2 thousand downloads total - 0 stars on GitHub - 1 maintainer
scPipe 2.8.0
Pipeline for single cell multi-omic data pre-processing5 versions - Latest release: 3 months ago - 20.3 thousand downloads total - 69 stars on GitHub - 1 maintainer
dagLogo 1.46.0
dagLogo: a Bioconductor package for visualizing conserved amino acid sequence pattern in groups b...5 versions - Latest release: 3 months ago - 23.7 thousand downloads total - 1 maintainer
Top 5.0% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 68.5 thousand downloads total - 1 maintainer
microRNA 1.66.0
Data and functions for dealing with microRNAs5 versions - Latest release: 3 months ago - 1 dependent package - 68.5 thousand downloads total - 1 maintainer
SynMut 1.24.0
SynMut: Designing Synonymously Mutated Sequences with Different Genomic Signatures5 versions - Latest release: 3 months ago - 8.64 thousand downloads total - 2 stars on GitHub - 1 maintainer
crisprseekplus 1.30.0 removed
crisprseekplus3 versions - Latest release: about 1 year ago - 9.62 thousand downloads total - 4 stars on GitHub - 1 maintainer
LowMACA 1.31.0 removed
LowMACA - Low frequency Mutation Analysis via Consensus Alignment2 versions - Latest release: over 1 year ago - 12.2 thousand downloads total - 2 maintainers
Related Keywords
Software
55
Sequencing
28
Alignment
27
DataImport
20
Genetics
18
Visualization
10
Coverage
8
MotifAnnotation
7
ChIPSeq
7
QualityControl
7
DataRepresentation
6
ImmunoOncology
6
GenomeAnnotation
6
Infrastructure
6
GeneRegulation
6
MultipleSequenceAlignment
5
Preprocessing
5
Annotation
4
SNP
4
bioconductor
4
MultipleComparison
4
MotifDiscovery
4
GeneticVariability
4
VariantAnnotation
4
Proteomics
3
FunctionalGenomics
3
RNASeq
3
Microarray
3
bioinformatics
3
Transcription
3
WholeGenome
2
miRNA
2
CRISPR
2
r
2
ChipOnChip
2
WorkflowStep
2
Classification
2
Network
2
ResearchField
2
SomaticMutation
2
SingleCell
2
VariantDetection
2
Epigenetics
2
GeneExpression
2
GenomicVariation
2
GUI
2
DNASeq
2
StatisticalMethod
1
IndelDetection
1
rna
1
rna-structural-analysis
1
rna-structure
1
sequences
1
ExperimentalDesign
1
structures
1
GeneFusionDetection
1
SangerSeq
1
ChIPchip
1
ddPCR
1
qPCR
1
text-mining
1
CopyNumberVariation
1
CpGIsland
1
DNAMethylation
1
DifferentialExpression
1
ATACSeq
1
ShinyApps
1
AnnotationHubSoftware
1
BiologicalQuestion
1
r-package
1
PeakDetection
1
motif-enrichment-analysis
1
interactive-report
1
Bayesian
1
epigenomics
1
Microbiome
1
chip-seq
1
classification
1
GraphAndNetwork
1
bioconductor-package
1
SystemsBiology
1
Clustering
1
GenomeAssembly
1
DifferentialPeakCalling
1
blast-search
1
ComparativeGenomics
1
MathematicalBiology
1