bioconductor.org "Software" keyword
CalibraCurve 1.0.0
Calibration curves for targeted proteomics, lipidomics and metabolomics data1 version - Latest release: 4 months ago - 971 downloads total - 5 stars on GitHub - 1 maintainer
Top 0.1% on bioconductor.org
9 versions - Latest release: 4 months ago - 740 dependent packages - 11.2 million downloads total - 1 maintainer
S4Vectors 0.48.0
Foundation of vector-like and list-like containers in Bioconductor9 versions - Latest release: 4 months ago - 740 dependent packages - 11.2 million downloads total - 1 maintainer
Top 1.4% on bioconductor.org
8 versions - Latest release: 4 months ago - 54 dependent packages - 1.74 million downloads total - 1 maintainer
HDF5Array 1.38.0
HDF5 datasets as array-like objects in R8 versions - Latest release: 4 months ago - 54 dependent packages - 1.74 million downloads total - 1 maintainer
Top 1.4% on bioconductor.org
6 versions - Latest release: 4 months ago - 47 dependent packages - 2.35 million downloads total - 105 stars on GitHub - 1 maintainer
GEOquery 2.78.0
Get data from NCBI Gene Expression Omnibus (GEO)6 versions - Latest release: 4 months ago - 47 dependent packages - 2.35 million downloads total - 105 stars on GitHub - 1 maintainer
Top 0.7% on bioconductor.org
8 versions - Latest release: 3 months ago - 101 dependent packages - 3.49 million downloads total - 1 maintainer
graph 1.88.1
graph: A package to handle graph data structures8 versions - Latest release: 3 months ago - 101 dependent packages - 3.49 million downloads total - 1 maintainer
Top 1.0% on bioconductor.org
6 versions - Latest release: 4 months ago - 61 dependent packages - 1.93 million downloads total - 1 maintainer
Rgraphviz 2.54.0
Provides plotting capabilities for R graph objects6 versions - Latest release: 4 months ago - 61 dependent packages - 1.93 million downloads total - 1 maintainer
epihet 1.16.0 removed
Determining Epigenetic Heterogeneity from Bisulfite Sequencing Data1 version - Latest release: over 2 years ago - 4.09 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 2.0% on bioconductor.org
6 versions - Latest release: 4 months ago - 6 dependent packages - 319 thousand downloads total - 1 maintainer
ROC 1.86.0
utilities for ROC, with microarray focus6 versions - Latest release: 4 months ago - 6 dependent packages - 319 thousand downloads total - 1 maintainer
Top 1.0% on bioconductor.org
10 versions - Latest release: about 2 months ago - 38 dependent packages - 2.28 million downloads total - 345 stars on GitHub - 1 maintainer
fgsea 1.36.2
Fast Gene Set Enrichment Analysis10 versions - Latest release: about 2 months ago - 38 dependent packages - 2.28 million downloads total - 345 stars on GitHub - 1 maintainer
Top 1.4% on bioconductor.org
6 versions - Latest release: 4 months ago - 33 dependent packages - 1.92 million downloads total - 1 maintainer
RBGL 1.86.0
An interface to the BOOST graph library6 versions - Latest release: 4 months ago - 33 dependent packages - 1.92 million downloads total - 1 maintainer
infinityFlow 1.20.2
Augmenting Massively Parallel Cytometry Experiments Using Multivariate Non-Linear Regressions7 versions - Latest release: about 1 month ago - 11 thousand downloads total - 1 maintainer
Top 1.3% on bioconductor.org
6 versions - Latest release: 4 months ago - 44 dependent packages - 1.98 million downloads total - 1 maintainer
impute 1.84.0
impute: Imputation for microarray data6 versions - Latest release: 4 months ago - 44 dependent packages - 1.98 million downloads total - 1 maintainer
Top 0.9% on bioconductor.org
6 versions - Latest release: 4 months ago - 36 dependent packages - 9.46 million downloads total - 1 maintainer
XVector 0.50.0
Foundation of external vector representation and manipulation in Bioconductor6 versions - Latest release: 4 months ago - 36 dependent packages - 9.46 million downloads total - 1 maintainer
Top 0.9% on bioconductor.org
6 versions - Latest release: 4 months ago - 74 dependent packages - 2.25 million downloads total - 1 maintainer
affy 1.88.0
Methods for Affymetrix Oligonucleotide Arrays6 versions - Latest release: 4 months ago - 74 dependent packages - 2.25 million downloads total - 1 maintainer
Top 1.0% on bioconductor.org
8 versions - Latest release: 4 months ago - 201 dependent packages - 2.03 million downloads total - 1 maintainer
SingleCellExperiment 1.32.0
S4 Classes for Single Cell Data8 versions - Latest release: 4 months ago - 201 dependent packages - 2.03 million downloads total - 1 maintainer
Top 0.9% on bioconductor.org
7 versions - Latest release: 4 months ago - 48 dependent packages - 4.74 million downloads total - 1 maintainer
annotate 1.88.0
Annotation for microarrays7 versions - Latest release: 4 months ago - 48 dependent packages - 4.74 million downloads total - 1 maintainer
Top 0.7% on bioconductor.org
6 versions - Latest release: 4 months ago - 66 dependent packages - 4.16 million downloads total - 1 maintainer
genefilter 1.92.0
genefilter: methods for filtering genes from high-throughput experiments6 versions - Latest release: 4 months ago - 66 dependent packages - 4.16 million downloads total - 1 maintainer
flowMeans 1.70.0
Non-parametric Flow Cytometry Data Gating6 versions - Latest release: 3 months ago - 2 dependent packages - 59 thousand downloads total - 1 maintainer
Top 0.5% on bioconductor.org
8 versions - Latest release: 4 months ago - 111 dependent packages - 7.81 million downloads total - 1 maintainer
DelayedArray 0.36.0
A unified framework for working transparently with on-disk and in-memory array-like datasets8 versions - Latest release: 4 months ago - 111 dependent packages - 7.81 million downloads total - 1 maintainer
Top 1.8% on bioconductor.org
6 versions - Latest release: 4 months ago - 10 dependent packages - 406 thousand downloads total - 1 maintainer
lumi 2.62.0
BeadArray Specific Methods for Illumina Methylation and Expression Microarrays6 versions - Latest release: 4 months ago - 10 dependent packages - 406 thousand downloads total - 1 maintainer
RTNduals 1.34.1
Analysis of co-regulation and inference of 'dual regulons'7 versions - Latest release: about 9 hours ago - 1 dependent package - 17.4 thousand downloads total - 2 maintainers
Top 1.5% on bioconductor.org
6 versions - Latest release: 4 months ago - 9 dependent packages - 337 thousand downloads total - 485 stars on GitHub - 1 maintainer
maftools 2.26.0 💰
Summarize, Analyze and Visualize MAF Files6 versions - Latest release: 4 months ago - 9 dependent packages - 337 thousand downloads total - 485 stars on GitHub - 1 maintainer
Top 0.5% on bioconductor.org
9 versions - Latest release: 4 months ago - 183 dependent packages - 4.3 million downloads total - 1 maintainer
GenomicFeatures 1.62.0
Query the gene models of a given organism/assembly9 versions - Latest release: 4 months ago - 183 dependent packages - 4.3 million downloads total - 1 maintainer
wavClusteR 2.44.0
Sensitive and highly resolved identification of RNA-protein interaction sites in PAR-CLIP data6 versions - Latest release: 3 months ago - 25.8 thousand downloads total - 1 maintainer
MatrixRider 1.42.0
Obtain total affinity and occupancies for binding site matrices on a given sequence6 versions - Latest release: 3 months ago - 20 thousand downloads total - 1 maintainer
Top 6.3% on bioconductor.org
6 versions - Latest release: 4 months ago - 52.9 thousand downloads total - 1 maintainer
goTools 1.84.0
Functions for Gene Ontology database6 versions - Latest release: 4 months ago - 52.9 thousand downloads total - 1 maintainer
notame 1.0.1
Workflow for non-targeted LC-MS metabolic profiling2 versions - Latest release: about 2 months ago - 1.54 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 0.1% on bioconductor.org
6 versions - Latest release: 4 months ago - 518 dependent packages - 11.2 million downloads total - 1 maintainer
Biobase 2.70.0
Biobase: Base functions for Bioconductor6 versions - Latest release: 4 months ago - 518 dependent packages - 11.2 million downloads total - 1 maintainer
Coralysis 1.0.0
Coralysis sensitive identification of imbalanced cell types and states in single-cell data via mu...1 version - Latest release: 4 months ago - 1.96 thousand downloads total - 1 stars on GitHub - 1 maintainer
DspikeIn 1.0.0
Estimating Absolute Abundance from Microbial Spike-in Controls2 versions - Latest release: 3 months ago - 933 downloads total - 16 stars on GitHub - 1 maintainer
Top 1.9% on bioconductor.org
8 versions - Latest release: 4 months ago - 31 dependent packages - 942 thousand downloads total - 63 stars on GitHub - 1 maintainer
minfi 1.56.0
Analyze Illumina Infinium DNA methylation arrays8 versions - Latest release: 4 months ago - 31 dependent packages - 942 thousand downloads total - 63 stars on GitHub - 1 maintainer
Top 1.2% on bioconductor.org
6 versions - Latest release: 4 months ago - 37 dependent packages - 2.63 million downloads total - 1 maintainer
multtest 2.66.0
Resampling-based multiple hypothesis testing6 versions - Latest release: 4 months ago - 37 dependent packages - 2.63 million downloads total - 1 maintainer
Top 1.2% on bioconductor.org
19 versions - Latest release: 3 months ago - 59 dependent packages - 2.41 million downloads total - 1 maintainer
clusterProfiler 4.18.4
A universal enrichment tool for interpreting omics data19 versions - Latest release: 3 months ago - 59 dependent packages - 2.41 million downloads total - 1 maintainer
Top 0.1% on bioconductor.org
8 versions - Latest release: 4 months ago - 563 dependent packages - 11.7 million downloads total - 1 maintainer
IRanges 2.44.0
Foundation of integer range manipulation in Bioconductor8 versions - Latest release: 4 months ago - 563 dependent packages - 11.7 million downloads total - 1 maintainer
scPCA 1.24.0
Sparse Contrastive Principal Component Analysis6 versions - Latest release: 4 months ago - 14.5 thousand downloads total - 12 stars on GitHub - 1 maintainer
schex 1.24.0
Hexbin plots for single cell omics data7 versions - Latest release: 4 months ago - 3 dependent packages - 23.1 thousand downloads total - 74 stars on GitHub - 1 maintainer
interacCircos 1.20.0
The Generation of Interactive Circos Plot6 versions - Latest release: 3 months ago - 9.45 thousand downloads total - 1 maintainer
Top 1.6% on bioconductor.org
13 versions - Latest release: 4 months ago - 27 dependent packages - 2.22 million downloads total - 1 maintainer
DOSE 4.4.0
Disease Ontology Semantic and Enrichment analysis13 versions - Latest release: 4 months ago - 27 dependent packages - 2.22 million downloads total - 1 maintainer
Top 0.2% on bioconductor.org
11 versions - Latest release: 4 months ago - 333 dependent packages - 9.4 million downloads total - 1 maintainer
Biostrings 2.78.0
Efficient manipulation of biological strings11 versions - Latest release: 4 months ago - 333 dependent packages - 9.4 million downloads total - 1 maintainer
Top 1.9% on bioconductor.org
8 versions - Latest release: 4 months ago - 30 dependent packages - 592 thousand downloads total - 123 stars on GitHub - 1 maintainer
MSnbase 2.36.0
Base Functions and Classes for Mass Spectrometry and Proteomics8 versions - Latest release: 4 months ago - 30 dependent packages - 592 thousand downloads total - 123 stars on GitHub - 1 maintainer
MetaDICT 1.0.0
Microbiome data integration method via shared dictionary learning1 version - Latest release: 4 months ago - 933 downloads total - 2 stars on GitHub - 1 maintainer
iModMix 1.0.0
Integrative Modules for Multi-Omics Data1 version - Latest release: 4 months ago - 936 downloads total - 2 stars on GitHub - 1 maintainer
Top 1.7% on bioconductor.org
11 versions - Latest release: 3 months ago - 69 dependent packages - 3.28 million downloads total - 72 stars on GitHub - 1 maintainer
rhdf5 2.54.1
R Interface to HDF511 versions - Latest release: 3 months ago - 69 dependent packages - 3.28 million downloads total - 72 stars on GitHub - 1 maintainer
Top 0.5% on bioconductor.org
11 versions - Latest release: 4 months ago - 146 dependent packages - 4.21 million downloads total - 330 stars on GitHub - 1 maintainer
DESeq2 1.50.2
Differential gene expression analysis based on the negative binomial distribution11 versions - Latest release: 4 months ago - 146 dependent packages - 4.21 million downloads total - 330 stars on GitHub - 1 maintainer
nondetects 2.40.0
Non-detects in qPCR data7 versions - Latest release: 3 months ago - 24.8 thousand downloads total - 1 maintainer
pRolocGUI 2.20.0
Interactive visualisation of spatial proteomics data6 versions - Latest release: 4 months ago - 27.8 thousand downloads total - 8 stars on GitHub - 1 maintainer
Top 1.5% on bioconductor.org
13 versions - Latest release: 4 months ago - 15 dependent packages - 973 thousand downloads total - 185 stars on GitHub - 1 maintainer
xcms 4.8.0
LC-MS and GC-MS Data Analysis13 versions - Latest release: 4 months ago - 15 dependent packages - 973 thousand downloads total - 185 stars on GitHub - 1 maintainer
Top 0.6% on bioconductor.org
8 versions - Latest release: 4 months ago - 132 dependent packages - 4.93 million downloads total - 1 maintainer
GenomicAlignments 1.46.0
Representation and manipulation of short genomic alignments8 versions - Latest release: 4 months ago - 132 dependent packages - 4.93 million downloads total - 1 maintainer
Top 5.9% on bioconductor.org
7 versions - Latest release: about 18 hours ago - 4 dependent packages - 190 thousand downloads total - 1 maintainer
survcomp 1.60.1
Performance Assessment and Comparison for Survival Analysis7 versions - Latest release: about 18 hours ago - 4 dependent packages - 190 thousand downloads total - 1 maintainer
Top 1.5% on bioconductor.org
9 versions - Latest release: 4 months ago - 96 dependent packages - 1.06 million downloads total - 1 maintainer
scater 1.38.0
Single-Cell Analysis Toolkit for Gene Expression Data in R9 versions - Latest release: 4 months ago - 96 dependent packages - 1.06 million downloads total - 1 maintainer
Top 9.1% on bioconductor.org
6 versions - Latest release: 3 months ago - 33.6 thousand downloads total - 1 maintainer
lapmix 1.76.0
Laplace Mixture Model in Microarray Experiments6 versions - Latest release: 3 months ago - 33.6 thousand downloads total - 1 maintainer
Top 0.9% on bioconductor.org
8 versions - Latest release: 4 months ago - 93 dependent packages - 2.08 million downloads total - 1 maintainer
VariantAnnotation 1.56.0
Annotation of Genetic Variants8 versions - Latest release: 4 months ago - 93 dependent packages - 2.08 million downloads total - 1 maintainer
Top 1.7% on bioconductor.org
12 versions - Latest release: about 2 months ago - 28 dependent packages - 2.27 million downloads total - 1 maintainer
ggtree 4.0.4
an R package for visualization of tree and annotation data12 versions - Latest release: about 2 months ago - 28 dependent packages - 2.27 million downloads total - 1 maintainer
FinfoMDS 1.0.0
Multidimensional Scaling with F-ratio for microbiome visualization1 version - Latest release: 4 months ago - 988 downloads total - 2 stars on GitHub - 1 maintainer
vulcan 1.32.0
VirtUaL ChIP-Seq data Analysis using Networks6 versions - Latest release: 3 months ago - 15.1 thousand downloads total - 1 maintainer
Top 1.4% on bioconductor.org
7 versions - Latest release: 4 months ago - 49 dependent packages - 1.39 million downloads total - 1 maintainer
GSEABase 1.72.0
Gene set enrichment data structures and methods7 versions - Latest release: 4 months ago - 49 dependent packages - 1.39 million downloads total - 1 maintainer
Top 1.3% on bioconductor.org
7 versions - Latest release: 4 months ago - 36 dependent packages - 1.98 million downloads total - 1 maintainer
ShortRead 1.68.0
FASTQ input and manipulation7 versions - Latest release: 4 months ago - 36 dependent packages - 1.98 million downloads total - 1 maintainer
Top 0.8% on bioconductor.org
9 versions - Latest release: about 2 months ago - 51 dependent packages - 4.95 million downloads total - 1 maintainer
flowCore 2.22.1
flowCore: Basic structures for flow cytometry data9 versions - Latest release: about 2 months ago - 51 dependent packages - 4.95 million downloads total - 1 maintainer
metaSeq 1.50.0
Meta-analysis of RNA-Seq count data in multiple studies6 versions - Latest release: 4 months ago - 26.9 thousand downloads total - 1 maintainer
cytoviewer 1.10.0
An interactive multi-channel image viewer for R6 versions - Latest release: 4 months ago - 8.49 thousand downloads total - 7 stars on GitHub - 1 maintainer
HelloRanges 1.36.0
Introduce *Ranges to bedtools users6 versions - Latest release: 3 months ago - 2 dependent packages - 32.1 thousand downloads total - 1 maintainer
Top 3.2% on bioconductor.org
6 versions - Latest release: 3 months ago - 1 dependent package - 201 thousand downloads total - 1 maintainer
lpsymphony 1.38.0
Symphony integer linear programming solver in R6 versions - Latest release: 3 months ago - 1 dependent package - 201 thousand downloads total - 1 maintainer
Top 0.6% on bioconductor.org
26 versions - Latest release: 2 months ago - 181 dependent packages - 4.28 million downloads total - 4 maintainers
edgeR 4.8.2
Empirical Analysis of Digital Gene Expression Data in R26 versions - Latest release: 2 months ago - 181 dependent packages - 4.28 million downloads total - 4 maintainers
scrapper 1.4.0
Bindings to C++ Libraries for Single-Cell Analysis6 versions - Latest release: 3 months ago - 19.1 thousand downloads total - 1 maintainer
Top 1.7% on bioconductor.org
7 versions - Latest release: 4 months ago - 43 dependent packages - 1.18 million downloads total - 3 maintainers
sva 3.58.0
Surrogate Variable Analysis7 versions - Latest release: 4 months ago - 43 dependent packages - 1.18 million downloads total - 3 maintainers
Top 2.6% on bioconductor.org
6 versions - Latest release: 3 months ago - 13 dependent packages - 605 thousand downloads total - 1 maintainer
Category 2.76.0
Category Analysis6 versions - Latest release: 3 months ago - 13 dependent packages - 605 thousand downloads total - 1 maintainer
iCARE 1.38.0
Individualized Coherent Absolute Risk Estimation (iCARE)6 versions - Latest release: 3 months ago - 21.6 thousand downloads total - 1 maintainer
stageR 1.32.0
stageR: stage-wise analysis of high throughput gene expression data in R7 versions - Latest release: 3 months ago - 2 dependent packages - 34 thousand downloads total - 1 maintainer
LOLA 1.40.1
Locus overlap analysis for enrichment of genomic ranges7 versions - Latest release: about 1 month ago - 5 dependent packages - 42.2 thousand downloads total - 1 maintainer
Rcwl 1.26.0
An R interface to the Common Workflow Language6 versions - Latest release: 3 months ago - 2 dependent packages - 16.9 thousand downloads total - 1 maintainer
bacon 1.38.0
Controlling bias and inflation in association studies using the empirical null distribution6 versions - Latest release: 3 months ago - 30.3 thousand downloads total - 1 maintainer
EBcoexpress 1.54.0
EBcoexpress for Differential Co-Expression Analysis6 versions - Latest release: 4 months ago - 1 dependent package - 31.7 thousand downloads total - 1 maintainer
Pviz 1.44.0
Peptide Annotation and Data Visualization using Gviz6 versions - Latest release: 3 months ago - 1 dependent package - 25.2 thousand downloads total - 1 maintainer
unifiedWMWqPCR 1.46.0
Unified Wilcoxon-Mann Whitney Test for testing differential expression in qPCR data6 versions - Latest release: 3 months ago - 21.7 thousand downloads total - 1 maintainer
scQTLtools 1.2.4
scQTLtools: an R/Bioconductor package for comprehensive identification and visualization of singl...6 versions - Latest release: 1 day ago - 2.6 thousand downloads total - 5 stars on GitHub - 1 maintainer
getDEE2 1.20.0
Programmatic access to the DEE2 RNA expression dataset7 versions - Latest release: 4 months ago - 10.4 thousand downloads total - 4 stars on GitHub - 1 maintainer
veloviz 1.16.0
VeloViz: RNA-velocity informed 2D embeddings for visualizing cell state trajectories6 versions - Latest release: 3 months ago - 7.7 thousand downloads total - 1 maintainer
twilight 1.86.0
Estimation of local false discovery rate6 versions - Latest release: 3 months ago - 1 dependent package - 55.6 thousand downloads total - 1 maintainer
rawrr 1.18.0
Direct Access to Orbitrap Data and Beyond8 versions - Latest release: 4 months ago - 1 dependent package - 20 thousand downloads total - 57 stars on GitHub - 1 maintainer
MCbiclust 1.34.0
Massive correlating biclusters for gene expression data and associated methods6 versions - Latest release: 3 months ago - 18.5 thousand downloads total - 1 maintainer
Top 6.2% on bioconductor.org
6 versions - Latest release: 4 months ago - 49.1 thousand downloads total - 1 maintainer
GeneticsPed 1.72.0
Pedigree and genetic relationship functions6 versions - Latest release: 4 months ago - 49.1 thousand downloads total - 1 maintainer
GloScope 2.0.1
Population-level Representation on scRNA-Seq data6 versions - Latest release: 3 months ago - 6.39 thousand downloads total - 1 stars on GitHub - 1 maintainer
SigCheck 2.42.0
Check a gene signature's prognostic performance against random signatures, known signatures, and ...6 versions - Latest release: 3 months ago - 21.4 thousand downloads total - 1 maintainer
Top 5.2% on bioconductor.org
6 versions - Latest release: 4 months ago - 1 dependent package - 83.9 thousand downloads total - 40 stars on GitHub - 1 maintainer
GENESIS 2.40.0
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzi...6 versions - Latest release: 4 months ago - 1 dependent package - 83.9 thousand downloads total - 40 stars on GitHub - 1 maintainer
Top 1.4% on bioconductor.org
6 versions - Latest release: 4 months ago - 45 dependent packages - 2.4 million downloads total - 106 stars on GitHub - 2 maintainers
qvalue 2.42.0
Q-value estimation for false discovery rate control6 versions - Latest release: 4 months ago - 45 dependent packages - 2.4 million downloads total - 106 stars on GitHub - 2 maintainers
Top 9.8% on bioconductor.org
6 versions - Latest release: 3 months ago - 1 dependent package - 32.5 thousand downloads total - 15 stars on GitHub - 1 maintainer
metaMS 1.46.0
MS-based metabolomics annotation pipeline6 versions - Latest release: 3 months ago - 1 dependent package - 32.5 thousand downloads total - 15 stars on GitHub - 1 maintainer
rfPred 1.48.0
Assign rfPred functional prediction scores to a missense variants list6 versions - Latest release: 3 months ago - 25.5 thousand downloads total - 1 maintainer
SpatialCPie 1.26.0
Cluster analysis of Spatial Transcriptomics data6 versions - Latest release: 4 months ago - 14 thousand downloads total - 1 maintainer
biotmle 1.34.0
Targeted Learning with Moderated Statistics for Biomarker Discovery7 versions - Latest release: 3 months ago - 19.6 thousand downloads total - 1 maintainer
Top 0.2% on bioconductor.org
7 versions - Latest release: 4 months ago - 632 dependent packages - 7.72 million downloads total - 1 maintainer
SummarizedExperiment 1.40.0
A container (S4 class) for matrix-like assays7 versions - Latest release: 4 months ago - 632 dependent packages - 7.72 million downloads total - 1 maintainer
Top 4.2% on bioconductor.org
6 versions - Latest release: 3 months ago - 12 dependent packages - 586 thousand downloads total - 1 maintainer
bluster 1.20.0
Clustering Algorithms for Bioconductor6 versions - Latest release: 3 months ago - 12 dependent packages - 586 thousand downloads total - 1 maintainer
AnVILPublish 1.20.0
Publish Packages and Other Resources to AnVIL Workspaces6 versions - Latest release: 4 months ago - 10.1 thousand downloads total - 1 maintainer
derfinderPlot 1.44.0
Plotting functions for derfinder6 versions - Latest release: 4 months ago - 3 dependent packages - 32.1 thousand downloads total - 2 stars on GitHub - 1 maintainer
CRISPRball 1.6.0
Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filte...5 versions - Latest release: about 1 month ago - 4.96 thousand downloads total - 11 stars on GitHub - 1 maintainer
Top 6.3% on bioconductor.org
6 versions - Latest release: 3 months ago - 1 dependent package - 67.4 thousand downloads total - 1 maintainer
gpls 1.82.0
Classification using generalized partial least squares6 versions - Latest release: 3 months ago - 1 dependent package - 67.4 thousand downloads total - 1 maintainer
coGPS 1.54.0
cancer outlier Gene Profile Sets6 versions - Latest release: 3 months ago - 29.4 thousand downloads total - 1 maintainer
ADAMgui 1.26.0
Activity and Diversity Analysis Module Graphical User Interface6 versions - Latest release: 3 months ago - 15 thousand downloads total - 1 maintainer
profileplyr 1.26.1
Visualization and annotation of read signal over genomic ranges with profileplyr8 versions - Latest release: about 1 month ago - 1 dependent package - 25.9 thousand downloads total - 2 maintainers
ggspavis 1.16.0
Visualization functions for spatial transcriptomics data10 versions - Latest release: 3 months ago - 1 dependent package - 17.7 thousand downloads total - 3 stars on GitHub - 1 maintainer
OUTRIDER 1.28.1
OUTRIDER - OUTlier in RNA-Seq fInDER10 versions - Latest release: 1 day ago - 1 dependent package - 28.9 thousand downloads total - 53 stars on GitHub - 1 maintainer
Related Keywords
GeneExpression
664
Sequencing
659
Visualization
482
ImmunoOncology
460
RNASeq
438
DifferentialExpression
420
Microarray
375
DataImport
368
SingleCell
341
Clustering
320
Transcriptomics
297
Preprocessing
290
Infrastructure
268
QualityControl
255
Genetics
227
Proteomics
208
Transcription
200
Classification
195
MultipleComparison
194
Network
189
Normalization
189
StatisticalMethod
183
GeneSetEnrichment
179
Coverage
175
Pathways
168
DataRepresentation
167
Regression
157
Annotation
156
MassSpectrometry
156
GraphAndNetwork
151
r
130
bioconductor
127
Metabolomics
125
DNAMethylation
124
GeneRegulation
123
SystemsBiology
113
FunctionalGenomics
109
Alignment
107
Epigenetics
106
ChIPSeq
100
Bayesian
98
BiomedicalInformatics
96
SNP
96
DimensionReduction
94
GO
84
Spatial
80
BatchEffect
79
CopyNumberVariation
78
bioinformatics
75
CellBasedAssays
73
FlowCytometry
73
CellBiology
72
OneChannel
72
GUI
71
NetworkInference
69
KEGG
69
FeatureExtraction
69
DifferentialMethylation
67
TwoChannel
64
TimeCourse
61
Microbiome
60
GenomeAnnotation
58
bioconductor-package
58
PrincipalComponent
58
SequenceMatching
57
NetworkEnrichment
57
GeneTarget
56
AlternativeSplicing
55
GeneticVariability
47
MethylationArray
47
WorkflowStep
47
Survival
47
DNASeq
44
ReportWriting
44
rstats
43
GenomicVariation
43
WholeGenome
43
Metagenomics
41
GenomeWideAssociation
41
ShinyApps
41
MethylSeq
40
ATACSeq
39
DifferentialSplicing
39
ThirdPartyClient
39
VariantAnnotation
37
ExperimentalDesign
36
r-package
35
FunctionalPrediction
35
HiC
35
BiologicalQuestion
35
GenePrediction
31
Reactome
30
Technology
29
genomics
28
SomaticMutation
28
mRNAMicroarray
28
mass-spectrometry
27
PeakDetection
27
CRISPR
26
MotifAnnotation
25