bioconductor.org "Software" keyword
Top 7.9% on bioconductor.org
6 versions - Latest release: 4 months ago - 3 dependent packages - 50.7 thousand downloads total - 1 maintainer
quantro 1.44.0
A test for when to use quantile normalization6 versions - Latest release: 4 months ago - 3 dependent packages - 50.7 thousand downloads total - 1 maintainer
Top 0.2% on bioconductor.org
21 versions - Latest release: 4 months ago - 342 dependent packages - 10.7 million downloads total - 1 maintainer
GenomeInfoDb 1.46.2
Utilities for manipulating chromosome names, including modifying them to follow a particular nami...21 versions - Latest release: 4 months ago - 342 dependent packages - 10.7 million downloads total - 1 maintainer
Top 8.9% on bioconductor.org
6 versions - Latest release: 4 months ago - 43.2 thousand downloads total - 2 maintainers
CRImage 1.58.0
CRImage a package to classify cells and calculate tumour cellularity6 versions - Latest release: 4 months ago - 43.2 thousand downloads total - 2 maintainers
Top 1.3% on bioconductor.org
6 versions - Latest release: 5 months ago - 44 dependent packages - 2 million downloads total - 1 maintainer
impute 1.84.0
impute: Imputation for microarray data6 versions - Latest release: 5 months ago - 44 dependent packages - 2 million downloads total - 1 maintainer
Top 0.1% on bioconductor.org
7 versions - Latest release: 5 months ago - 729 dependent packages - 12.2 million downloads total - 1 maintainer
BiocGenerics 0.56.0
S4 generic functions used in Bioconductor7 versions - Latest release: 5 months ago - 729 dependent packages - 12.2 million downloads total - 1 maintainer
Top 1.0% on bioconductor.org
10 versions - Latest release: 3 months ago - 38 dependent packages - 2.33 million downloads total - 345 stars on GitHub - 1 maintainer
fgsea 1.36.2
Fast Gene Set Enrichment Analysis10 versions - Latest release: 3 months ago - 38 dependent packages - 2.33 million downloads total - 345 stars on GitHub - 1 maintainer
Top 1.1% on bioconductor.org
10 versions - Latest release: 5 months ago - 377 dependent packages - 8.89 million downloads total - 63 stars on GitHub - 1 maintainer
BiocParallel 1.44.0
Bioconductor facilities for parallel evaluation10 versions - Latest release: 5 months ago - 377 dependent packages - 8.89 million downloads total - 63 stars on GitHub - 1 maintainer
Top 1.7% on bioconductor.org
13 versions - Latest release: 17 days ago - 28 dependent packages - 2.36 million downloads total - 1 maintainer
ggtree 4.0.5
an R package for visualization of tree and annotation data13 versions - Latest release: 17 days ago - 28 dependent packages - 2.36 million downloads total - 1 maintainer
onlineFDR 2.18.0
Online error rate control6 versions - Latest release: 5 months ago - 11.2 thousand downloads total - 14 stars on GitHub - 1 maintainer
Top 1.6% on bioconductor.org
13 versions - Latest release: 5 months ago - 27 dependent packages - 2.27 million downloads total - 1 maintainer
DOSE 4.4.0
Disease Ontology Semantic and Enrichment analysis13 versions - Latest release: 5 months ago - 27 dependent packages - 2.27 million downloads total - 1 maintainer
Top 1.2% on bioconductor.org
19 versions - Latest release: 4 months ago - 59 dependent packages - 2.46 million downloads total - 1 maintainer
clusterProfiler 4.18.4
A universal enrichment tool for interpreting omics data19 versions - Latest release: 4 months ago - 59 dependent packages - 2.46 million downloads total - 1 maintainer
Top 1.4% on bioconductor.org
6 versions - Latest release: 5 months ago - 47 dependent packages - 2.37 million downloads total - 109 stars on GitHub - 1 maintainer
GEOquery 2.78.0
Get data from NCBI Gene Expression Omnibus (GEO)6 versions - Latest release: 5 months ago - 47 dependent packages - 2.37 million downloads total - 109 stars on GitHub - 1 maintainer
Top 1.4% on bioconductor.org
7 versions - Latest release: 5 months ago - 49 dependent packages - 1.41 million downloads total - 1 maintainer
GSEABase 1.72.0
Gene set enrichment data structures and methods7 versions - Latest release: 5 months ago - 49 dependent packages - 1.41 million downloads total - 1 maintainer
Top 0.5% on bioconductor.org
9 versions - Latest release: 2 days ago - 111 dependent packages - 7.93 million downloads total - 1 maintainer
DelayedArray 0.36.1
A unified framework for working transparently with on-disk and in-memory array-like datasets9 versions - Latest release: 2 days ago - 111 dependent packages - 7.93 million downloads total - 1 maintainer
Top 0.7% on bioconductor.org
6 versions - Latest release: 5 months ago - 66 dependent packages - 4.19 million downloads total - 1 maintainer
genefilter 1.92.0
genefilter: methods for filtering genes from high-throughput experiments6 versions - Latest release: 5 months ago - 66 dependent packages - 4.19 million downloads total - 1 maintainer
Top 1.2% on bioconductor.org
6 versions - Latest release: 5 months ago - 37 dependent packages - 2.66 million downloads total - 1 maintainer
multtest 2.66.0
Resampling-based multiple hypothesis testing6 versions - Latest release: 5 months ago - 37 dependent packages - 2.66 million downloads total - 1 maintainer
SpatialFeatureExperiment 1.12.1
Integrating SpatialExperiment with Simple Features in sf13 versions - Latest release: 5 months ago - 1 dependent package - 18 thousand downloads total - 57 stars on GitHub - 1 maintainer
Top 1.5% on bioconductor.org
10 versions - Latest release: 13 days ago - 96 dependent packages - 1.09 million downloads total - 1 maintainer
scater 1.38.1
Single-Cell Analysis Toolkit for Gene Expression Data in R10 versions - Latest release: 13 days ago - 96 dependent packages - 1.09 million downloads total - 1 maintainer
Top 0.5% on bioconductor.org
9 versions - Latest release: 5 months ago - 183 dependent packages - 4.34 million downloads total - 1 maintainer
GenomicFeatures 1.62.0
Query the gene models of a given organism/assembly9 versions - Latest release: 5 months ago - 183 dependent packages - 4.34 million downloads total - 1 maintainer
Top 3.8% on bioconductor.org
6 versions - Latest release: 5 months ago - 9 dependent packages - 143 thousand downloads total - 1 maintainer
ropls 1.42.0
PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics data6 versions - Latest release: 5 months ago - 9 dependent packages - 143 thousand downloads total - 1 maintainer
Top 0.7% on bioconductor.org
8 versions - Latest release: 4 months ago - 101 dependent packages - 3.53 million downloads total - 1 maintainer
graph 1.88.1
graph: A package to handle graph data structures8 versions - Latest release: 4 months ago - 101 dependent packages - 3.53 million downloads total - 1 maintainer
Top 1.3% on bioconductor.org
7 versions - Latest release: 5 months ago - 36 dependent packages - 1.99 million downloads total - 1 maintainer
ShortRead 1.68.0
FASTQ input and manipulation7 versions - Latest release: 5 months ago - 36 dependent packages - 1.99 million downloads total - 1 maintainer
h5vc 2.44.0
Managing alignment tallies using a hdf5 backend7 versions - Latest release: 4 months ago - 38.1 thousand downloads total - 1 maintainer
Top 1.7% on bioconductor.org
7 versions - Latest release: 5 months ago - 43 dependent packages - 1.19 million downloads total - 3 maintainers
sva 3.58.0
Surrogate Variable Analysis7 versions - Latest release: 5 months ago - 43 dependent packages - 1.19 million downloads total - 3 maintainers
Top 0.2% on bioconductor.org
7 versions - Latest release: 5 months ago - 632 dependent packages - 7.83 million downloads total - 1 maintainer
SummarizedExperiment 1.40.0
A container (S4 class) for matrix-like assays7 versions - Latest release: 5 months ago - 632 dependent packages - 7.83 million downloads total - 1 maintainer
Top 0.5% on bioconductor.org
11 versions - Latest release: 5 months ago - 146 dependent packages - 4.27 million downloads total - 330 stars on GitHub - 1 maintainer
DESeq2 1.50.2
Differential gene expression analysis based on the negative binomial distribution11 versions - Latest release: 5 months ago - 146 dependent packages - 4.27 million downloads total - 330 stars on GitHub - 1 maintainer
sigsquared 1.42.0
Gene signature generation for functionally validated signaling pathways6 versions - Latest release: 5 months ago - 19.8 thousand downloads total - 1 maintainer
scPCA 1.24.0
Sparse Contrastive Principal Component Analysis6 versions - Latest release: 5 months ago - 15.1 thousand downloads total - 12 stars on GitHub - 1 maintainer
Top 0.6% on bioconductor.org
8 versions - Latest release: 5 months ago - 132 dependent packages - 4.99 million downloads total - 1 maintainer
GenomicAlignments 1.46.0
Representation and manipulation of short genomic alignments8 versions - Latest release: 5 months ago - 132 dependent packages - 4.99 million downloads total - 1 maintainer
Top 1.5% on bioconductor.org
7 versions - Latest release: 4 months ago - 512 thousand downloads total - 384 stars on GitHub - 1 maintainer
EnhancedVolcano 1.28.2
Publication-ready volcano plots with enhanced colouring and labeling7 versions - Latest release: 4 months ago - 512 thousand downloads total - 384 stars on GitHub - 1 maintainer
Top 0.4% on bioconductor.org
7 versions - Latest release: 3 months ago - 251 dependent packages - 5.22 million downloads total - 1 maintainer
rtracklayer 1.70.1
R interface to genome annotation files and the UCSC genome browser7 versions - Latest release: 3 months ago - 251 dependent packages - 5.22 million downloads total - 1 maintainer
Top 0.9% on bioconductor.org
6 versions - Latest release: 5 months ago - 36 dependent packages - 9.59 million downloads total - 1 maintainer
XVector 0.50.0
Foundation of external vector representation and manipulation in Bioconductor6 versions - Latest release: 5 months ago - 36 dependent packages - 9.59 million downloads total - 1 maintainer
Top 1.7% on bioconductor.org
7 versions - Latest release: 2 months ago - 30 dependent packages - 1.19 million downloads total - 1 maintainer
vsn 3.78.1
Variance stabilization and calibration for microarray data7 versions - Latest release: 2 months ago - 30 dependent packages - 1.19 million downloads total - 1 maintainer
seqArchR 1.14.0
Identify Different Architectures of Sequence Elements6 versions - Latest release: 5 months ago - 1 dependent package - 8.2 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 7.0% on bioconductor.org
8 versions - Latest release: 5 months ago - 3 dependent packages - 3.18 million downloads total - 6 stars on GitHub - 1 maintainer
Rhdf5lib 1.32.0
hdf5 library as an R package8 versions - Latest release: 5 months ago - 3 dependent packages - 3.18 million downloads total - 6 stars on GitHub - 1 maintainer
batchCorr 1.0.0
Within And Between Batch Correction Of LC-MS Metabolomics Data1 version - Latest release: 5 months ago - 1.7 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 1.8% on bioconductor.org
8 versions - Latest release: 5 months ago - 14 dependent packages - 421 thousand downloads total - 2 maintainers
Rsubread 2.24.0
Mapping, quantification and variant analysis of sequencing data8 versions - Latest release: 5 months ago - 14 dependent packages - 421 thousand downloads total - 2 maintainers
Top 0.2% on bioconductor.org
11 versions - Latest release: 5 months ago - 333 dependent packages - 9.51 million downloads total - 1 maintainer
Biostrings 2.78.0
Efficient manipulation of biological strings11 versions - Latest release: 5 months ago - 333 dependent packages - 9.51 million downloads total - 1 maintainer
Top 0.1% on bioconductor.org
6 versions - Latest release: 5 months ago - 518 dependent packages - 11.4 million downloads total - 1 maintainer
Biobase 2.70.0
Biobase: Base functions for Bioconductor6 versions - Latest release: 5 months ago - 518 dependent packages - 11.4 million downloads total - 1 maintainer
Top 0.9% on bioconductor.org
8 versions - Latest release: 5 months ago - 93 dependent packages - 2.1 million downloads total - 1 maintainer
VariantAnnotation 1.56.0
Annotation of Genetic Variants8 versions - Latest release: 5 months ago - 93 dependent packages - 2.1 million downloads total - 1 maintainer
BioCartaImage 1.8.1
BioCarta Pathway Images6 versions - Latest release: about 1 month ago - 6.22 thousand downloads total - 11 stars on GitHub - 1 maintainer
MEIGOR 1.44.0
MEIGOR - MEtaheuristics for bIoinformatics Global Optimization8 versions - Latest release: 4 months ago - 2 dependent packages - 25.2 thousand downloads total - 1 maintainer
Top 1.8% on bioconductor.org
6 versions - Latest release: 5 months ago - 12 dependent packages - 444 thousand downloads total - 1 maintainer
oligoClasses 1.72.0
Classes for high-throughput arrays supported by oligo and crlmm6 versions - Latest release: 5 months ago - 12 dependent packages - 444 thousand downloads total - 1 maintainer
BaalChIP 1.36.0
BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes6 versions - Latest release: 5 months ago - 21.9 thousand downloads total - 1 maintainer
DepInfeR 1.14.0
Inferring tumor-specific cancer dependencies through integrating ex-vivo drug response assays and...6 versions - Latest release: 5 months ago - 7.57 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 0.9% on bioconductor.org
7 versions - Latest release: 5 months ago - 48 dependent packages - 4.78 million downloads total - 1 maintainer
annotate 1.88.0
Annotation for microarrays7 versions - Latest release: 5 months ago - 48 dependent packages - 4.78 million downloads total - 1 maintainer
Top 0.8% on bioconductor.org
8 versions - Latest release: 5 months ago - 129 dependent packages - 2.82 million downloads total - 1 maintainer
BSgenome 1.78.0
Software infrastructure for efficient representation of full genomes and their SNPs8 versions - Latest release: 5 months ago - 129 dependent packages - 2.82 million downloads total - 1 maintainer
SEraster 1.2.0
Rasterization Preprocessing Framework for Scalable Spatial Omics Data Analysis2 versions - Latest release: 4 months ago - 3 thousand downloads total - 19 stars on GitHub - 1 maintainer
Top 0.3% on bioconductor.org
16 versions - Latest release: 5 months ago - 322 dependent packages - 7.05 million downloads total - 1 maintainer
limma 3.66.0
Linear Models for Microarray and Omics Data16 versions - Latest release: 5 months ago - 322 dependent packages - 7.05 million downloads total - 1 maintainer
Top 0.1% on bioconductor.org
9 versions - Latest release: 5 months ago - 740 dependent packages - 11.3 million downloads total - 1 maintainer
S4Vectors 0.48.0
Foundation of vector-like and list-like containers in Bioconductor9 versions - Latest release: 5 months ago - 740 dependent packages - 11.3 million downloads total - 1 maintainer
Top 2.0% on bioconductor.org
6 versions - Latest release: 5 months ago - 6 dependent packages - 322 thousand downloads total - 1 maintainer
ROC 1.86.0
utilities for ROC, with microarray focus6 versions - Latest release: 5 months ago - 6 dependent packages - 322 thousand downloads total - 1 maintainer
Top 5.2% on bioconductor.org
9 versions - Latest release: 4 months ago - 3 dependent packages - 85.2 thousand downloads total - 11 stars on GitHub - 1 maintainer
rols 3.6.1
An R interface to the Ontology Lookup Service9 versions - Latest release: 4 months ago - 3 dependent packages - 85.2 thousand downloads total - 11 stars on GitHub - 1 maintainer
hermes 1.14.0 💰
Preprocessing, analyzing, and reporting of RNA-seq data8 versions - Latest release: 5 months ago - 13 thousand downloads total - 12 stars on GitHub - 1 maintainer
easylift 1.8.0
An R package to perform genomic liftover5 versions - Latest release: 4 months ago - 6.33 thousand downloads total - 8 stars on GitHub - 1 maintainer
Top 4.3% on bioconductor.org
8 versions - Latest release: 5 months ago - 27 dependent packages - 311 thousand downloads total - 24 stars on GitHub - 1 maintainer
basilisk 1.22.0
Freezing Python Dependencies Inside Bioconductor Packages8 versions - Latest release: 5 months ago - 27 dependent packages - 311 thousand downloads total - 24 stars on GitHub - 1 maintainer
Top 5.5% on bioconductor.org
7 versions - Latest release: 4 months ago - 3 dependent packages - 78 thousand downloads total - 6 stars on GitHub - 1 maintainer
rpx 2.18.0
R Interface to the ProteomeXchange Repository7 versions - Latest release: 4 months ago - 3 dependent packages - 78 thousand downloads total - 6 stars on GitHub - 1 maintainer
atSNP 1.26.0
Affinity test for identifying regulatory SNPs6 versions - Latest release: 4 months ago - 16.3 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 1.5% on bioconductor.org
13 versions - Latest release: 5 months ago - 15 dependent packages - 978 thousand downloads total - 185 stars on GitHub - 1 maintainer
xcms 4.8.0
LC-MS and GC-MS Data Analysis13 versions - Latest release: 5 months ago - 15 dependent packages - 978 thousand downloads total - 185 stars on GitHub - 1 maintainer
Top 0.8% on bioconductor.org
9 versions - Latest release: 3 months ago - 51 dependent packages - 4.96 million downloads total - 1 maintainer
flowCore 2.22.1
flowCore: Basic structures for flow cytometry data9 versions - Latest release: 3 months ago - 51 dependent packages - 4.96 million downloads total - 1 maintainer
Top 1.4% on bioconductor.org
6 versions - Latest release: 5 months ago - 33 dependent packages - 1.94 million downloads total - 1 maintainer
RBGL 1.86.0
An interface to the BOOST graph library6 versions - Latest release: 5 months ago - 33 dependent packages - 1.94 million downloads total - 1 maintainer
Top 1.4% on bioconductor.org
8 versions - Latest release: 5 months ago - 54 dependent packages - 1.77 million downloads total - 1 maintainer
HDF5Array 1.38.0
HDF5 datasets as array-like objects in R8 versions - Latest release: 5 months ago - 54 dependent packages - 1.77 million downloads total - 1 maintainer
Top 1.0% on bioconductor.org
8 versions - Latest release: 5 months ago - 201 dependent packages - 2.07 million downloads total - 1 maintainer
SingleCellExperiment 1.32.0
S4 Classes for Single Cell Data8 versions - Latest release: 5 months ago - 201 dependent packages - 2.07 million downloads total - 1 maintainer
Top 0.1% on bioconductor.org
8 versions - Latest release: 5 months ago - 563 dependent packages - 11.8 million downloads total - 1 maintainer
IRanges 2.44.0
Foundation of integer range manipulation in Bioconductor8 versions - Latest release: 5 months ago - 563 dependent packages - 11.8 million downloads total - 1 maintainer
Top 1.4% on bioconductor.org
6 versions - Latest release: 5 months ago - 45 dependent packages - 2.44 million downloads total - 106 stars on GitHub - 2 maintainers
qvalue 2.42.0
Q-value estimation for false discovery rate control6 versions - Latest release: 5 months ago - 45 dependent packages - 2.44 million downloads total - 106 stars on GitHub - 2 maintainers
marr 1.20.0
Maximum rank reproducibility6 versions - Latest release: 5 months ago - 10 thousand downloads total - 2 stars on GitHub - 1 maintainer
immApex 1.4.3
Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning9 versions - Latest release: 3 months ago - 7.48 thousand downloads total - 12 stars on GitHub - 1 maintainer
Summix 2.16.0
Summix2: A suite of methods to estimate, adjust, and leverage substructure in genetic summary data6 versions - Latest release: 5 months ago - 8.17 thousand downloads total - 1 maintainer
anglemania 1.0.0
Feature Extraction for scRNA-seq Dataset Integration1 version - Latest release: 5 months ago - 1.31 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 1.0% on bioconductor.org
7 versions - Latest release: 5 months ago - 45 dependent packages - 5.55 million downloads total - 1 maintainer
MatrixGenerics 1.22.0
S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects7 versions - Latest release: 5 months ago - 45 dependent packages - 5.55 million downloads total - 1 maintainer
arrayMvout 1.68.0
multivariate outlier detection for expression array QA6 versions - Latest release: 5 months ago - 46.3 thousand downloads total - 1 maintainer
crisprBwa 1.14.0
BWA-based alignment of CRISPR gRNA spacer sequences6 versions - Latest release: 4 months ago - 1 dependent package - 8.93 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 1.8% on bioconductor.org
6 versions - Latest release: 5 months ago - 10 dependent packages - 409 thousand downloads total - 1 maintainer
lumi 2.62.0
BeadArray Specific Methods for Illumina Methylation and Expression Microarrays6 versions - Latest release: 5 months ago - 10 dependent packages - 409 thousand downloads total - 1 maintainer
MsFeatures 1.18.0
Functionality for Mass Spectrometry Features6 versions - Latest release: 5 months ago - 2 dependent packages - 146 thousand downloads total - 7 stars on GitHub - 1 maintainer
ontoProc 2.4.0
processing of ontologies of anatomy, cell lines, and so on8 versions - Latest release: 5 months ago - 3 dependent packages - 26.3 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 0.1% on bioconductor.org
10 versions - Latest release: 4 months ago - 604 dependent packages - 9.43 million downloads total - 1 maintainer
GenomicRanges 1.62.1
Representation and manipulation of genomic intervals10 versions - Latest release: 4 months ago - 604 dependent packages - 9.43 million downloads total - 1 maintainer
Top 1.8% on bioconductor.org
6 versions - Latest release: 5 months ago - 15 dependent packages - 515 thousand downloads total - 4 stars on GitHub - 1 maintainer
seqLogo 1.76.0
Sequence logos for DNA sequence alignments6 versions - Latest release: 5 months ago - 15 dependent packages - 515 thousand downloads total - 4 stars on GitHub - 1 maintainer
fedup 1.18.0
Fisher's Test for Enrichment and Depletion of User-Defined Pathways6 versions - Latest release: 5 months ago - 9.32 thousand downloads total - 7 stars on GitHub - 1 maintainer
pmp 1.22.1
Peak Matrix Processing and signal batch correction for metabolomics datasets7 versions - Latest release: 5 months ago - 2 dependent packages - 17.5 thousand downloads total - 1 maintainer
Top 1.7% on bioconductor.org
11 versions - Latest release: 4 months ago - 69 dependent packages - 3.33 million downloads total - 72 stars on GitHub - 1 maintainer
rhdf5 2.54.1
R Interface to HDF511 versions - Latest release: 4 months ago - 69 dependent packages - 3.33 million downloads total - 72 stars on GitHub - 1 maintainer
lineagespot 1.14.0
Detection of SARS-CoV-2 lineages in wastewater samples using next-generation sequencing6 versions - Latest release: 4 months ago - 7.86 thousand downloads total - 2 stars on GitHub - 1 maintainer
MetaboAnnotation 1.14.0
Utilities for Annotation of Metabolomics Data9 versions - Latest release: 5 months ago - 20.8 thousand downloads total - 17 stars on GitHub - 1 maintainer
Top 0.6% on bioconductor.org
26 versions - Latest release: 3 months ago - 181 dependent packages - 4.32 million downloads total - 4 maintainers
edgeR 4.8.2
Empirical Analysis of Digital Gene Expression Data in R26 versions - Latest release: 3 months ago - 181 dependent packages - 4.32 million downloads total - 4 maintainers
prebs 1.50.0
Probe region expression estimation for RNA-seq data for improved microarray comparability6 versions - Latest release: 5 months ago - 28.7 thousand downloads total - 1 maintainer
DiscoRhythm 1.26.0
Interactive Workflow for Discovering Rhythmicity in Biological Data6 versions - Latest release: 5 months ago - 14.5 thousand downloads total - 12 stars on GitHub - 1 maintainer
tpSVG 1.6.0
Thin plate models to detect spatially variable genes5 versions - Latest release: 5 months ago - 5.25 thousand downloads total - 2 stars on GitHub - 1 maintainer
BAGS 2.50.0
A Bayesian Approach for Geneset Selection6 versions - Latest release: 5 months ago - 29.4 thousand downloads total - 1 maintainer
Top 0.9% on bioconductor.org
6 versions - Latest release: 5 months ago - 74 dependent packages - 2.26 million downloads total - 1 maintainer
affy 1.88.0
Methods for Affymetrix Oligonucleotide Arrays6 versions - Latest release: 5 months ago - 74 dependent packages - 2.26 million downloads total - 1 maintainer
timeOmics 1.22.0
Time-Course Multi-Omics data integration6 versions - Latest release: 5 months ago - 1 dependent package - 13 thousand downloads total - 21 stars on GitHub - 1 maintainer
Top 2.8% on bioconductor.org
6 versions - Latest release: 5 months ago - 7 dependent packages - 203 thousand downloads total - 14 stars on GitHub - 1 maintainer
RUVSeq 1.44.0
Remove Unwanted Variation from RNA-Seq Data6 versions - Latest release: 5 months ago - 7 dependent packages - 203 thousand downloads total - 14 stars on GitHub - 1 maintainer
Top 1.9% on bioconductor.org
21 versions - Latest release: about 1 month ago - 15 dependent packages - 2.3 million downloads total - 1 maintainer
enrichplot 1.30.5
Visualization of Functional Enrichment Result21 versions - Latest release: about 1 month ago - 15 dependent packages - 2.3 million downloads total - 1 maintainer
Top 1.9% on bioconductor.org
8 versions - Latest release: 5 months ago - 30 dependent packages - 599 thousand downloads total - 123 stars on GitHub - 1 maintainer
MSnbase 2.36.0
Base Functions and Classes for Mass Spectrometry and Proteomics8 versions - Latest release: 5 months ago - 30 dependent packages - 599 thousand downloads total - 123 stars on GitHub - 1 maintainer
BgeeCall 1.26.0
Automatic RNA-Seq present/absent gene expression calls generation9 versions - Latest release: 4 months ago - 12.7 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 9.9% on bioconductor.org
6 versions - Latest release: 5 months ago - 50.2 thousand downloads total - 86 stars on GitHub - 1 maintainer
scmap 1.32.0
A tool for unsupervised projection of single cell RNA-seq data6 versions - Latest release: 5 months ago - 50.2 thousand downloads total - 86 stars on GitHub - 1 maintainer
adSplit 1.80.0
Annotation-Driven Clustering6 versions - Latest release: 5 months ago - 50.2 thousand downloads total - 1 maintainer
Top 1.9% on bioconductor.org
8 versions - Latest release: 5 months ago - 31 dependent packages - 950 thousand downloads total - 63 stars on GitHub - 1 maintainer
minfi 1.56.0
Analyze Illumina Infinium DNA methylation arrays8 versions - Latest release: 5 months ago - 31 dependent packages - 950 thousand downloads total - 63 stars on GitHub - 1 maintainer
Top 1.0% on bioconductor.org
6 versions - Latest release: 5 months ago - 61 dependent packages - 1.95 million downloads total - 1 maintainer
Rgraphviz 2.54.0
Provides plotting capabilities for R graph objects6 versions - Latest release: 5 months ago - 61 dependent packages - 1.95 million downloads total - 1 maintainer
rWikiPathways 1.30.0
rWikiPathways - R client library for the WikiPathways API6 versions - Latest release: 4 months ago - 5 dependent packages - 78.5 thousand downloads total - 17 stars on GitHub - 1 maintainer
biocmake 1.2.0
CMake for Bioconductor3 versions - Latest release: 5 months ago - 16.5 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 2.3% on bioconductor.org
8 versions - Latest release: 2 months ago - 13 dependent packages - 563 thousand downloads total - 141 stars on GitHub - 1 maintainer
tximport 1.38.2
Import and summarize transcript-level estimates for transcript- and gene-level analysis8 versions - Latest release: 2 months ago - 13 dependent packages - 563 thousand downloads total - 141 stars on GitHub - 1 maintainer
Top 8.0% on bioconductor.org
7 versions - Latest release: 4 months ago - 15 dependent packages - 1.82 million downloads total - 5 stars on GitHub - 1 maintainer
beachmat 2.26.0
Compiling Bioconductor to Handle Each Matrix Type7 versions - Latest release: 4 months ago - 15 dependent packages - 1.82 million downloads total - 5 stars on GitHub - 1 maintainer
Related Keywords
GeneExpression
664
Sequencing
659
Visualization
482
ImmunoOncology
460
RNASeq
438
DifferentialExpression
421
Microarray
375
DataImport
368
SingleCell
341
Clustering
321
Transcriptomics
297
Preprocessing
290
Infrastructure
268
QualityControl
255
Genetics
227
Proteomics
208
Transcription
200
Classification
195
MultipleComparison
194
Network
189
Normalization
189
StatisticalMethod
183
GeneSetEnrichment
179
Coverage
175
Pathways
168
DataRepresentation
167
Regression
157
Annotation
156
MassSpectrometry
156
GraphAndNetwork
151
r
130
bioconductor
127
Metabolomics
125
DNAMethylation
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GeneRegulation
123
SystemsBiology
113
FunctionalGenomics
109
Alignment
107
Epigenetics
106
ChIPSeq
100
Bayesian
98
BiomedicalInformatics
96
SNP
96
DimensionReduction
94
GO
84
Spatial
80
BatchEffect
79
CopyNumberVariation
78
bioinformatics
75
FlowCytometry
73
CellBasedAssays
73
CellBiology
72
OneChannel
72
GUI
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NetworkInference
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KEGG
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FeatureExtraction
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DifferentialMethylation
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TwoChannel
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TimeCourse
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Microbiome
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bioconductor-package
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GenomeAnnotation
58
PrincipalComponent
58
NetworkEnrichment
57
SequenceMatching
57
GeneTarget
56
AlternativeSplicing
55
WorkflowStep
47
Survival
47
MethylationArray
47
GeneticVariability
47
ReportWriting
44
rstats
44
DNASeq
44
WholeGenome
43
GenomicVariation
43
ShinyApps
41
Metagenomics
41
GenomeWideAssociation
41
MethylSeq
40
ThirdPartyClient
39
ATACSeq
39
DifferentialSplicing
39
VariantAnnotation
37
ExperimentalDesign
36
FunctionalPrediction
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r-package
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mass-spectrometry
28
SomaticMutation
28
genomics
28
PeakDetection
27
CRISPR
26
MotifAnnotation
25