bioconductor.org "StatisticalMethod" keyword
View the packages on the bioconductor.org package registry that are tagged with the "StatisticalMethod" keyword.
MOSClip 1.2.2
Multi Omics Survival Clip4 versions - Latest release: about 1 month ago - 1.85 thousand downloads total - 0 stars on GitHub - 1 maintainer
nucleoSim 1.36.0
Generate synthetic nucleosome maps5 versions - Latest release: 3 months ago - 1 dependent package - 14.8 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 1.7% on bioconductor.org
6 versions - Latest release: 3 months ago - 43 dependent packages - 964 thousand downloads total - 3 maintainers
sva 3.56.0
Surrogate Variable Analysis6 versions - Latest release: 3 months ago - 43 dependent packages - 964 thousand downloads total - 3 maintainers
onlineFDR 2.16.0
Online error rate control5 versions - Latest release: 3 months ago - 8.96 thousand downloads total - 14 stars on GitHub - 1 maintainer
BioCor 1.32.0
Functional similarities5 versions - Latest release: 2 months ago - 18.6 thousand downloads total - 14 stars on GitHub - 1 maintainer
HDTD 1.42.0
Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Trans...5 versions - Latest release: 3 months ago - 17.8 thousand downloads total - 1 stars on GitHub - 1 maintainer
SAIGEgds 2.8.0
Scalable Implementation of Generalized mixed models using GDS files in Phenome-Wide Association S...7 versions - Latest release: 2 months ago - 12.5 thousand downloads total - 7 stars on GitHub - 1 maintainer
SomaticSignatures 2.44.0
Somatic Signatures5 versions - Latest release: 3 months ago - 1 dependent package - 51.1 thousand downloads total - 22 stars on GitHub - 1 maintainer
Top 9.7% on bioconductor.org
6 versions - Latest release: 3 months ago - 1 dependent package - 35 thousand downloads total - 195 stars on GitHub - 1 maintainer
muscat 1.22.0
Multi-sample multi-group scRNA-seq data analysis tools6 versions - Latest release: 3 months ago - 1 dependent package - 35 thousand downloads total - 195 stars on GitHub - 1 maintainer
peco 1.20.0
A Supervised Approach for **P**r**e**dicting **c**ell Cycle Pr**o**gression using scRNA-seq data5 versions - Latest release: 2 months ago - 8.14 thousand downloads total - 12 stars on GitHub - 1 maintainer
DESpace 2.0.0
DESpace: a framework to discover spatially variable genes and differential spatial patterns acros...6 versions - Latest release: 3 months ago - 5.21 thousand downloads total - 4 stars on GitHub - 1 maintainer
DifferentialRegulation 2.6.0
Differentially regulated genes from scRNA-seq data9 versions - Latest release: 3 months ago - 6.18 thousand downloads total - 11 stars on GitHub - 1 maintainer
QUBIC 1.36.0
An R package for qualitative biclustering in support of gene co-expression analyses5 versions - Latest release: 3 months ago - 2 dependent packages - 30.5 thousand downloads total - 3 stars on GitHub - 1 maintainer
HIBAG 1.44.0
HLA Genotype Imputation with Attribute Bagging7 versions - Latest release: 3 months ago - 27.1 thousand downloads total - 28 stars on GitHub - 1 maintainer
IntramiRExploreR 1.30.0
Predicting Targets for Drosophila Intragenic miRNAs5 versions - Latest release: 2 months ago - 11.6 thousand downloads total - 0 stars on GitHub - 1 maintainer
selectKSigs 1.20.0
Selecting the number of mutational signatures using a perplexity-based measure and cross-validation5 versions - Latest release: 2 months ago - 7.99 thousand downloads total - 0 stars on GitHub - 1 maintainer
lefser 1.18.0
R implementation of the LEfSE method for microbiome biomarker discovery7 versions - Latest release: 3 months ago - 1 dependent package - 34 thousand downloads total - 42 stars on GitHub - 1 maintainer
HiLDA 1.22.0
Conducting statistical inference on comparing the mutational exposures of mutational signatures b...5 versions - Latest release: 2 months ago - 1 dependent package - 10.1 thousand downloads total - 3 stars on GitHub - 1 maintainer
swfdr 1.34.0
Estimation of the science-wise false discovery rate and the false discovery rate conditional on c...5 versions - Latest release: 3 months ago - 13.4 thousand downloads total - 3 stars on GitHub - 2 maintainers
deconvR 1.14.0
Simulation and Deconvolution of Omic Profiles5 versions - Latest release: 3 months ago - 8.85 thousand downloads total - 9 stars on GitHub - 1 maintainer
flowGraph 1.16.0
Identifying differential cell populations in flow cytometry data accounting for marker frequency5 versions - Latest release: 3 months ago - 7.12 thousand downloads total - 0 stars on GitHub - 1 maintainer
FeatSeekR 1.8.0
FeatSeekR an R package for unsupervised feature selection5 versions - Latest release: 2 months ago - 4.33 thousand downloads total - 1 stars on GitHub - 1 maintainer
BioQC 1.36.0
Detect tissue heterogeneity in expression profiles with gene sets5 versions - Latest release: 2 months ago - 24.3 thousand downloads total - 5 stars on GitHub - 1 maintainer
PING 2.51.0
Probabilistic inference for Nucleosome Positioning with MNase-based or Sonicated Short-read Data5 versions - Latest release: 3 months ago - 28.5 thousand downloads total - 1 maintainer
Top 7.1% on bioconductor.org
5 versions - Latest release: 3 months ago - 27 thousand downloads total - 87 stars on GitHub - 1 maintainer
TitanCNA 1.45.0
Subclonal copy number and LOH prediction from whole genome sequencing of tumours5 versions - Latest release: 3 months ago - 27 thousand downloads total - 87 stars on GitHub - 1 maintainer
limpca 1.4.0
An R package for the linear modeling of high-dimensional designed data based on ASCA/APCA family ...3 versions - Latest release: 2 months ago - 3.24 thousand downloads total - 2 stars on GitHub - 1 maintainer
ClusterSignificance 1.36.0
The ClusterSignificance package provides tools to assess if class clusters in dimensionality redu...5 versions - Latest release: 2 months ago - 15.5 thousand downloads total - 0 stars on GitHub - 1 maintainer
granulator 1.16.0
Rapid benchmarking of methods for *in silico* deconvolution of bulk RNA-seq data5 versions - Latest release: 2 months ago - 1 dependent package - 11.1 thousand downloads total - 3 stars on GitHub - 1 maintainer
netboost 2.16.0
Network Analysis Supported by Boosting5 versions - Latest release: 3 months ago - 8.54 thousand downloads total - 1 maintainer
treeclimbR 1.4.0
An algorithm to find optimal signal levels in a tree4 versions - Latest release: 3 months ago - 3.37 thousand downloads total - 20 stars on GitHub - 1 maintainer
plotGrouper 1.26.0
Shiny app GUI wrapper for ggplot with built-in statistical analysis5 versions - Latest release: 3 months ago - 9.69 thousand downloads total - 6 stars on GitHub - 1 maintainer
ClusterJudge 1.30.0
Judging Quality of Clustering Methods using Mutual Information5 versions - Latest release: 3 months ago - 12.6 thousand downloads total - 1 maintainer
receptLoss 1.20.0
Unsupervised Identification of Genes with Expression Loss in Subsets of Tumors5 versions - Latest release: 3 months ago - 7.34 thousand downloads total - 1 maintainer
APL 1.12.0
Association Plots6 versions - Latest release: 3 months ago - 7.5 thousand downloads total - 16 stars on GitHub - 1 maintainer
stageR 1.30.1
stageR: stage-wise analysis of high throughput gene expression data in R6 versions - Latest release: about 2 months ago - 2 dependent packages - 26.9 thousand downloads total - 1 maintainer
CytoGLMM 1.16.0
Conditional Differential Analysis for Flow and Mass Cytometry Experiments5 versions - Latest release: 3 months ago - 1 dependent package - 7.55 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 4.9% on bioconductor.org
8 versions - Latest release: 3 months ago - 5 dependent packages - 63.4 thousand downloads total - 68 stars on GitHub - 1 maintainer
CATALYST 1.32.0
Cytometry dATa anALYSis Tools8 versions - Latest release: 3 months ago - 5 dependent packages - 63.4 thousand downloads total - 68 stars on GitHub - 1 maintainer
methylclock 1.14.0
Methylclock - DNA methylation-based clocks5 versions - Latest release: 3 months ago - 13 thousand downloads total - 40 stars on GitHub - 1 maintainer
pageRank 1.18.0
Temporal and Multiplex PageRank for Gene Regulatory Network Analysis5 versions - Latest release: 3 months ago - 7.41 thousand downloads total - 0 stars on GitHub - 1 maintainer
DExMA 1.16.0
Differential Expression Meta-Analysis6 versions - Latest release: 3 months ago - 7.27 thousand downloads total - 1 maintainer
dStruct 1.14.0
Identifying differentially reactive regions from RNA structurome profiling data5 versions - Latest release: 3 months ago - 5.63 thousand downloads total - 2 stars on GitHub - 1 maintainer
beer 1.12.0
Bayesian Enrichment Estimation in R5 versions - Latest release: 3 months ago - 6.05 thousand downloads total - 11 stars on GitHub - 1 maintainer
deltaCaptureC 1.22.0
This Package Discovers Meso-scale Chromatin Remodeling from 3C Data6 versions - Latest release: 3 months ago - 8.42 thousand downloads total - 1 maintainer
SPOTlight 1.12.1
`SPOTlight`: Spatial Transcriptomics Deconvolution8 versions - Latest release: 19 days ago - 14.3 thousand downloads total - 186 stars on GitHub - 1 maintainer
kmcut 1.2.0
Optimized Kaplan Meier analysis and identification and validation of prognostic biomarkers2 versions - Latest release: 3 months ago - 1.96 thousand downloads total - 1 maintainer
MAI 1.14.0
Mechanism-Aware Imputation5 versions - Latest release: 3 months ago - 6.34 thousand downloads total - 2 stars on GitHub - 1 maintainer
pareg 1.12.0
Pathway enrichment using a regularized regression approach5 versions - Latest release: 3 months ago - 4.14 thousand downloads total - 7 stars on GitHub - 1 maintainer
randPack 1.54.0
Randomization routines for Clinical Trials5 versions - Latest release: 3 months ago - 26 thousand downloads total - 1 maintainer
switchBox 1.44.0
Utilities to train and validate classifiers based on pair switching using the K-Top-Scoring-Pair ...5 versions - Latest release: 3 months ago - 1 dependent package - 23 thousand downloads total - 3 maintainers
zitools 1.2.0
Analysis of zero-inflated count data2 versions - Latest release: 3 months ago - 1.71 thousand downloads total - 0 stars on GitHub - 1 maintainer
tpSVG 1.4.0
Thin plate models to detect spatially variable genes4 versions - Latest release: 3 months ago - 3.22 thousand downloads total - 2 stars on GitHub - 1 maintainer
decoupleR 2.14.0
decoupleR: Ensemble of computational methods to infer biological activities from omics data6 versions - Latest release: 2 months ago - 3 dependent packages - 54.6 thousand downloads total - 256 stars on GitHub - 1 maintainer
CytoDx 1.28.0
Robust prediction of clinical outcomes using cytometry data without cell gating5 versions - Latest release: 3 months ago - 12.5 thousand downloads total - 1 maintainer
MCbiclust 1.32.0
Massive correlating biclusters for gene expression data and associated methods5 versions - Latest release: 3 months ago - 15.2 thousand downloads total - 1 maintainer
signeR 2.10.0
Empirical Bayesian approach to mutational signature discovery5 versions - Latest release: 2 months ago - 18.7 thousand downloads total - 13 stars on GitHub - 1 maintainer
Top 4.7% on bioconductor.org
6 versions - Latest release: 3 months ago - 117 thousand downloads total - 615 stars on GitHub - 1 maintainer
infercnv 1.24.0
Infer Copy Number Variation from Single-Cell RNA-Seq Data6 versions - Latest release: 3 months ago - 117 thousand downloads total - 615 stars on GitHub - 1 maintainer
RGSEA 1.42.0
Random Gene Set Enrichment Analysis5 versions - Latest release: 3 months ago - 22 thousand downloads total - 1 maintainer
gsean 1.28.0
Gene Set Enrichment Analysis with Networks5 versions - Latest release: 3 months ago - 12.3 thousand downloads total - 1 maintainer
CyTOFpower 1.13.1
Power analysis for CyTOF experiments5 versions - Latest release: 3 months ago - 4.14 thousand downloads total - 1 maintainer
consICA 2.6.0
consensus Independent Component Analysis5 versions - Latest release: 2 months ago - 6.71 thousand downloads total - 0 stars on GitHub - 1 maintainer
MetID 1.26.0
Network-based prioritization of putative metabolite IDs5 versions - Latest release: 3 months ago - 9.55 thousand downloads total - 1 stars on GitHub - 1 maintainer
scoup 1.2.0
Simulate Codons with Darwinian Selection Modelled as an OU Process2 versions - Latest release: 3 months ago - 1.63 thousand downloads total - 0 stars on GitHub - 1 maintainer
POMA 1.18.0
Tools for Omics Data Analysis5 versions - Latest release: 3 months ago - 1 dependent package - 10.6 thousand downloads total - 11 stars on GitHub - 1 maintainer
Summix 2.14.0
Summix2: A suite of methods to estimate, adjust, and leverage substructure in genetic summary data5 versions - Latest release: 3 months ago - 5.86 thousand downloads total - 1 maintainer
Top 7.6% on bioconductor.org
5 versions - Latest release: 3 months ago - 37.4 thousand downloads total - 1 maintainer
Mulcom 1.58.0
Calculates Mulcom test5 versions - Latest release: 3 months ago - 37.4 thousand downloads total - 1 maintainer
treekoR 1.16.0
Cytometry Cluster Hierarchy and Cellular-to-phenotype Associations5 versions - Latest release: 3 months ago - 6.81 thousand downloads total - 1 maintainer
Top 5.2% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 66.5 thousand downloads total - 38 stars on GitHub - 1 maintainer
GENESIS 2.38.0
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzi...5 versions - Latest release: 3 months ago - 1 dependent package - 66.5 thousand downloads total - 38 stars on GitHub - 1 maintainer
waddR 1.22.0
Statistical tests for detecting differential distributions based on the 2-Wasserstein distance5 versions - Latest release: 3 months ago - 8.93 thousand downloads total - 26 stars on GitHub - 1 maintainer
GGPA 1.20.0
graph-GPA: A graphical model for prioritizing GWAS results and investigating pleiotropic architec...5 versions - Latest release: 3 months ago - 7.79 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 5.8% on bioconductor.org
5 versions - Latest release: 3 months ago - 3 dependent packages - 54.9 thousand downloads total - 1 maintainer
fabia 2.54.0
FABIA: Factor Analysis for Bicluster Acquisition5 versions - Latest release: 3 months ago - 3 dependent packages - 54.9 thousand downloads total - 1 maintainer
metaCCA 1.36.0
Summary Statistics-Based Multivariate Meta-Analysis of Genome-Wide Association Studies Using Cano...5 versions - Latest release: 3 months ago - 16.8 thousand downloads total - 1 maintainer
Top 4.9% on bioconductor.org
5 versions - Latest release: 3 months ago - 64.7 thousand downloads total - 1 maintainer
scde 2.36.0
Single Cell Differential Expression5 versions - Latest release: 3 months ago - 64.7 thousand downloads total - 1 maintainer
OpenStats 1.20.0
A Robust and Scalable Software Package for Reproducible Analysis of High-Throughput genotype-phen...5 versions - Latest release: 3 months ago - 7.57 thousand downloads total - 1 maintainer
IsoformSwitchAnalyzeR 2.8.0
Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- a...5 versions - Latest release: 3 months ago - 37.7 thousand downloads total - 1 maintainer
mbQTL 1.8.0
mbQTL: A package for SNP-Taxa mGWAS analysis5 versions - Latest release: 3 months ago - 4.37 thousand downloads total - 1 maintainer
Harman 1.36.0
The removal of batch effects from datasets using a PCA and constrained optimisation based technique5 versions - Latest release: 3 months ago - 1 dependent package - 25.9 thousand downloads total - 1 maintainer
BUScorrect 1.26.0
Batch Effects Correction with Unknown Subtypes5 versions - Latest release: 3 months ago - 9.99 thousand downloads total - 1 maintainer
profileScoreDist 1.36.0
Profile score distributions5 versions - Latest release: 3 months ago - 12.8 thousand downloads total - 1 maintainer
survtype 1.24.0
Subtype Identification with Survival Data5 versions - Latest release: 3 months ago - 9.11 thousand downloads total - 1 maintainer
cpvSNP 1.40.0
Gene set analysis methods for SNP association p-values that lie in genes in given gene sets5 versions - Latest release: 3 months ago - 17.8 thousand downloads total - 1 maintainer
ORFhunteR 1.16.0
Predict open reading frames in nucleotide sequences5 versions - Latest release: 3 months ago - 6.64 thousand downloads total - 1 stars on GitHub - 1 maintainer
phenomis 1.10.0
Postprocessing and univariate analysis of omics data7 versions - Latest release: 3 months ago - 5.74 thousand downloads total - 1 maintainer
rqt 1.34.0
rqt: utilities for gene-level meta-analysis5 versions - Latest release: 3 months ago - 11.8 thousand downloads total - 2 stars on GitHub - 1 maintainer
YAPSA 1.34.0
Yet Another Package for Signature Analysis5 versions - Latest release: 3 months ago - 24.1 thousand downloads total - 1 maintainer
synergyfinder 3.16.0
Calculate and Visualize Synergy Scores for Drug Combinations6 versions - Latest release: 3 months ago - 31 thousand downloads total - 1 maintainer
PLSDAbatch 1.4.0
PLSDA-batch3 versions - Latest release: 3 months ago - 3.7 thousand downloads total - 13 stars on GitHub - 1 maintainer
PAIRADISE 1.24.1
PAIRADISE: Paired analysis of differential isoform expression6 versions - Latest release: about 2 months ago - 11.7 thousand downloads total - 2 maintainers
spillR 1.4.0
Spillover Compensation in Mass Cytometry Data5 versions - Latest release: 3 months ago - 3.23 thousand downloads total - 1 maintainer
quantiseqr 1.16.0
Quantification of the Tumor Immune contexture from RNA-seq data5 versions - Latest release: 3 months ago - 2 dependent packages - 24.9 thousand downloads total - 1 maintainer
srnadiff 1.28.0
Finding differentially expressed unannotated genomic regions from RNA-seq data6 versions - Latest release: 3 months ago - 10.9 thousand downloads total - 1 maintainer
regionalpcs 1.6.0
Summarizing Regional Methylation with Regional Principal Components Analysis4 versions - Latest release: 3 months ago - 4.21 thousand downloads total - 3 stars on GitHub - 1 maintainer
methInheritSim 1.30.0
Simulating Whole-Genome Inherited Bisulphite Sequencing Data5 versions - Latest release: 3 months ago - 1 dependent package - 12.7 thousand downloads total - 1 stars on GitHub - 1 maintainer
tweeDEseq 1.54.0
RNA-seq data analysis using the Poisson-Tweedie family of distributions5 versions - Latest release: 3 months ago - 37.6 thousand downloads total - 0 stars on GitHub - 1 maintainer
spaSim 1.10.0
Spatial point data simulator for tissue images5 versions - Latest release: 3 months ago - 5.15 thousand downloads total - 2 stars on GitHub - 1 maintainer
DeMixT 1.24.0
Cell type-specific deconvolution of heterogeneous tumor samples with two or three components usin...5 versions - Latest release: 3 months ago - 12 thousand downloads total - 1 maintainer
Top 9.4% on bioconductor.org
5 versions - Latest release: 3 months ago - 31.5 thousand downloads total - 1 maintainer
MeasurementError.cor 1.80.0
Measurement Error model estimate for correlation coefficient5 versions - Latest release: 3 months ago - 31.5 thousand downloads total - 1 maintainer
phosphonormalizer 1.32.0
Compensates for the bias introduced by median normalization in5 versions - Latest release: 3 months ago - 12.7 thousand downloads total - 1 maintainer
IWTomics 1.32.0
Interval-Wise Testing for Omics Data5 versions - Latest release: 3 months ago - 14.1 thousand downloads total - 1 maintainer
AMARETTO 1.24.0
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis an...5 versions - Latest release: 3 months ago - 14.2 thousand downloads total - 1 maintainer
MultiMed 2.30.0
Testing multiple biological mediators simultaneously5 versions - Latest release: 3 months ago - 17.6 thousand downloads total - 1 maintainer
Related Keywords
Software
177
GeneExpression
59
DifferentialExpression
45
Sequencing
43
ImmunoOncology
36
RNASeq
32
Clustering
30
Visualization
25
MultipleComparison
23
Genetics
23
Regression
22
Classification
21
SingleCell
21
Preprocessing
19
Microarray
18
Network
17
Transcriptomics
15
BatchEffect
15
Bayesian
15
BiologicalQuestion
15
PrincipalComponent
14
Transcription
13
DimensionReduction
12
GraphAndNetwork
12
Normalization
12
FlowCytometry
11
Pathways
10
DNAMethylation
10
GenomeWideAssociation
10
GeneSetEnrichment
10
r
9
FeatureExtraction
8
Spatial
7
Coverage
7
Proteomics
7
bioconductor
7
GenomicVariation
7
CellBiology
7
DataImport
7
CellBasedAssays
7
DifferentialMethylation
7
MassSpectrometry
7
SNP
7
AlternativeSplicing
7
WholeGenome
6
DifferentialSplicing
6
NetworkEnrichment
6
Survival
6
QualityControl
6
SomaticMutation
6
bioinformatics
6
Metabolomics
6
GeneRegulation
6
Epigenetics
5
Technology
5
bioconductor-package
5
TimeCourse
5
MethylationArray
5
BiomedicalInformatics
5
GeneTarget
5
ResearchField
5
ExperimentalDesign
4
DNASeq
4
Microbiome
4
r-package
4
Infrastructure
4
KEGG
4
WorkflowStep
4
SystemsBiology
4
CopyNumberVariation
3
NetworkInference
3
rstats
3
Annotation
3
MethylSeq
3
HiddenMarkovModel
3
ChIPSeq
2
mRNAMicroarray
2
MicroRNAArray
2
GenomeAnnotation
2
methylation
2
inheritance
2
ExomeSeq
2
FunctionalPrediction
2
MathematicalBiology
2
FunctionalGenomics
2
GO
2
missing-data
2
machine-learning
2
statistics
2
dna-methylation
2
nucleosomes
2
bioconductor-packages
2
Alignment
2
snp
2
GenePrediction
2
simulation
2
DataRepresentation
1
causality
1
BioCarta
1
CRISPR
1