bioconductor.org "StatisticalMethod" keyword
MSstatsResponse 1.0.0
Statistical Methods for Chemoproteomics Dose-Response Analysis1 version - Latest release: 5 months ago - 1.05 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 1.7% on bioconductor.org
7 versions - Latest release: 5 months ago - 43 dependent packages - 1.18 million downloads total - 3 maintainers
sva 3.58.0
Surrogate Variable Analysis7 versions - Latest release: 5 months ago - 43 dependent packages - 1.18 million downloads total - 3 maintainers
GGPA 1.22.0
graph-GPA: A graphical model for prioritizing GWAS results and investigating pleiotropic architec...6 versions - Latest release: 4 months ago - 10.5 thousand downloads total - 1 stars on GitHub - 1 maintainer
spaSim 1.12.0
Spatial point data simulator for tissue images6 versions - Latest release: 4 months ago - 7.61 thousand downloads total - 2 stars on GitHub - 1 maintainer
GPA 1.22.0
GPA (Genetic analysis incorporating Pleiotropy and Annotation)6 versions - Latest release: 4 months ago - 9.99 thousand downloads total - 16 stars on GitHub - 1 maintainer
zitools 1.4.0
Analysis of zero-inflated count data3 versions - Latest release: 4 months ago - 3.53 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 4.9% on bioconductor.org
6 versions - Latest release: 4 months ago - 76.4 thousand downloads total - 1 maintainer
scde 2.38.0
Single Cell Differential Expression6 versions - Latest release: 4 months ago - 76.4 thousand downloads total - 1 maintainer
Top 4.7% on bioconductor.org
7 versions - Latest release: 4 months ago - 167 thousand downloads total - 646 stars on GitHub - 1 maintainer
infercnv 1.26.0
Infer Copy Number Variation from Single-Cell RNA-Seq Data7 versions - Latest release: 4 months ago - 167 thousand downloads total - 646 stars on GitHub - 1 maintainer
nucleoSim 1.38.0
Generate synthetic nucleosome maps6 versions - Latest release: 4 months ago - 1 dependent package - 17.6 thousand downloads total - 2 stars on GitHub - 1 maintainer
BEclear 2.26.0
Correction of batch effects in DNA methylation data6 versions - Latest release: 4 months ago - 24.2 thousand downloads total - 5 stars on GitHub - 1 maintainer
CTSV 1.12.0
Identification of cell-type-specific spatially variable genes accounting for excess zeros6 versions - Latest release: 4 months ago - 7.37 thousand downloads total - 2 stars on GitHub - 1 maintainer
VaSP 1.22.0
Quantification and Visualization of Variations of Splicing in Population6 versions - Latest release: 4 months ago - 9.91 thousand downloads total - 3 stars on GitHub - 1 maintainer
tweeDEseq 1.56.0
RNA-seq data analysis using the Poisson-Tweedie family of distributions6 versions - Latest release: 4 months ago - 42.5 thousand downloads total - 0 stars on GitHub - 1 maintainer
switchBox 1.46.0
Utilities to train and validate classifiers based on pair switching using the K-Top-Scoring-Pair ...6 versions - Latest release: 4 months ago - 1 dependent package - 26.9 thousand downloads total - 3 maintainers
garfield 1.38.0
GWAS Analysis of Regulatory or Functional Information Enrichment with LD correction6 versions - Latest release: 4 months ago - 16.6 thousand downloads total - 1 maintainer
INDEED 2.24.0
Interactive Visualization of Integrated Differential Expression and Differential Network Analysis...6 versions - Latest release: 4 months ago - 11.1 thousand downloads total - 4 stars on GitHub - 2 maintainers
BANDITS 1.26.0
BANDITS: Bayesian ANalysis of DIfferenTial Splicing8 versions - Latest release: 4 months ago - 1 dependent package - 17.4 thousand downloads total - 19 stars on GitHub - 1 maintainer
gsean 1.30.0
Gene Set Enrichment Analysis with Networks6 versions - Latest release: 4 months ago - 15.3 thousand downloads total - 1 maintainer
MAI 1.16.0
Mechanism-Aware Imputation6 versions - Latest release: 4 months ago - 12.2 thousand downloads total - 2 stars on GitHub - 1 maintainer
FeatSeekR 1.10.0
FeatSeekR an R package for unsupervised feature selection6 versions - Latest release: 4 months ago - 6.29 thousand downloads total - 1 stars on GitHub - 1 maintainer
CatsCradle 1.4.2
This package provides methods for analysing spatial transcriptomics data and for discovering gene...5 versions - Latest release: about 2 months ago - 4.55 thousand downloads total - 3 stars on GitHub - 1 maintainer
methylInheritance 1.34.0
Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multip...7 versions - Latest release: 4 months ago - 1 dependent package - 17.4 thousand downloads total - 0 stars on GitHub - 1 maintainer
methInheritSim 1.32.0
Simulating Whole-Genome Inherited Bisulphite Sequencing Data6 versions - Latest release: 4 months ago - 1 dependent package - 15.7 thousand downloads total - 2 stars on GitHub - 1 maintainer
covEB 1.36.0
Empirical Bayes estimate of block diagonal covariance matrices6 versions - Latest release: 4 months ago - 16.7 thousand downloads total - 1 maintainer
fgga 1.18.0
Hierarchical ensemble method based on factor graph7 versions - Latest release: 4 months ago - 9.25 thousand downloads total - 3 stars on GitHub - 1 maintainer
selectKSigs 1.22.0
Selecting the number of mutational signatures using a perplexity-based measure and cross-validation6 versions - Latest release: 4 months ago - 10.1 thousand downloads total - 0 stars on GitHub - 1 maintainer
flowGraph 1.18.0
Identifying differential cell populations in flow cytometry data accounting for marker frequency6 versions - Latest release: 4 months ago - 9.3 thousand downloads total - 1 stars on GitHub - 1 maintainer
QUBIC 1.38.0
An R package for qualitative biclustering in support of gene co-expression analyses6 versions - Latest release: 4 months ago - 2 dependent packages - 34.1 thousand downloads total - 4 stars on GitHub - 1 maintainer
omicRexposome 1.32.0
Exposome and omic data associatin and integration analysis7 versions - Latest release: 5 months ago - 15.8 thousand downloads total - 1 maintainer
target 1.24.0
Predict Combined Function of Transcription Factors6 versions - Latest release: 4 months ago - 11.6 thousand downloads total - 5 stars on GitHub - 1 maintainer
discordant 1.34.0
The Discordant Method: A Novel Approach for Differential Correlation6 versions - Latest release: 4 months ago - 19.7 thousand downloads total - 10 stars on GitHub - 1 maintainer
regionalpcs 1.8.0
Summarizing Regional Methylation with Regional Principal Components Analysis6 versions - Latest release: about 2 months ago - 5.84 thousand downloads total - 3 stars on GitHub - 1 maintainer
RolDE 1.14.0
RolDE: Robust longitudinal Differential Expression6 versions - Latest release: 4 months ago - 7.89 thousand downloads total - 5 stars on GitHub - 1 maintainer
distinct 1.22.0
distinct: a method for differential analyses via hierarchical permutation tests7 versions - Latest release: 4 months ago - 2 dependent packages - 18.8 thousand downloads total - 11 stars on GitHub - 1 maintainer
DESpace 2.2.2
DESpace: a framework to discover spatially variable genes and differential spatial patterns acros...8 versions - Latest release: 3 months ago - 8.39 thousand downloads total - 6 stars on GitHub - 1 maintainer
methylclock 1.16.0
Methylclock - DNA methylation-based clocks6 versions - Latest release: 4 months ago - 18 thousand downloads total - 46 stars on GitHub - 1 maintainer
MPRAnalyze 1.28.0
Statistical Analysis of MPRA data6 versions - Latest release: 4 months ago - 13.7 thousand downloads total - 11 stars on GitHub - 1 maintainer
phenomis 1.12.0
Postprocessing and univariate analysis of omics data8 versions - Latest release: 4 months ago - 7.78 thousand downloads total - 1 maintainer
ClusterJudge 1.32.0
Judging Quality of Clustering Methods using Mutual Information6 versions - Latest release: 4 months ago - 15.2 thousand downloads total - 1 maintainer
dcGSA 1.38.0
Distance-correlation based Gene Set Analysis for longitudinal gene expression profiles6 versions - Latest release: 4 months ago - 16.9 thousand downloads total - 1 maintainer
AWFisher 1.24.0
An R package for fast computing for adaptively weighted fisher's method6 versions - Latest release: 4 months ago - 14.5 thousand downloads total - 3 stars on GitHub - 1 maintainer
MethylMix 2.40.0
MethylMix: Identifying methylation driven cancer genes6 versions - Latest release: 4 months ago - 31.1 thousand downloads total - 1 maintainer
IntramiRExploreR 1.32.0
Predicting Targets for Drosophila Intragenic miRNAs6 versions - Latest release: 4 months ago - 14.2 thousand downloads total - 0 stars on GitHub - 1 maintainer
scoup 1.4.0
Simulate Codons with Darwinian Selection Modelled as an OU Process3 versions - Latest release: 4 months ago - 3.42 thousand downloads total - 0 stars on GitHub - 1 maintainer
POMA 1.20.0
Tools for Omics Data Analysis6 versions - Latest release: 4 months ago - 1 dependent package - 15.5 thousand downloads total - 12 stars on GitHub - 1 maintainer
rqt 1.36.0
rqt: utilities for gene-level meta-analysis6 versions - Latest release: 4 months ago - 14.5 thousand downloads total - 2 stars on GitHub - 1 maintainer
kmcut 1.4.0
Optimized Kaplan Meier analysis and identification and validation of prognostic biomarkers3 versions - Latest release: 4 months ago - 3.6 thousand downloads total - 1 maintainer
Top 7.6% on bioconductor.org
6 versions - Latest release: 5 months ago - 40.9 thousand downloads total - 1 maintainer
Mulcom 1.60.0
Calculates Mulcom test6 versions - Latest release: 5 months ago - 40.9 thousand downloads total - 1 maintainer
MultiBaC 1.20.0
Multiomic Batch effect Correction6 versions - Latest release: 4 months ago - 12.7 thousand downloads total - 1 maintainer
STADyUM 1.0.2
Statistical Transcriptome Analysis under a Dynamic Unified Model2 versions - Latest release: 3 months ago - 1.24 thousand downloads total - 1 stars on GitHub - 1 maintainer
iCARE 1.38.0
Individualized Coherent Absolute Risk Estimation (iCARE)6 versions - Latest release: 4 months ago - 21.6 thousand downloads total - 1 maintainer
stageR 1.32.0
stageR: stage-wise analysis of high throughput gene expression data in R7 versions - Latest release: 4 months ago - 2 dependent packages - 34 thousand downloads total - 1 maintainer
bacon 1.38.0
Controlling bias and inflation in association studies using the empirical null distribution6 versions - Latest release: 4 months ago - 30.3 thousand downloads total - 1 maintainer
MCbiclust 1.34.0
Massive correlating biclusters for gene expression data and associated methods6 versions - Latest release: 4 months ago - 18.5 thousand downloads total - 1 maintainer
Top 5.2% on bioconductor.org
6 versions - Latest release: 4 months ago - 1 dependent package - 83.9 thousand downloads total - 40 stars on GitHub - 1 maintainer
GENESIS 2.40.0
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzi...6 versions - Latest release: 4 months ago - 1 dependent package - 83.9 thousand downloads total - 40 stars on GitHub - 1 maintainer
PPInfer 1.36.0
Inferring functionally related proteins using protein interaction networks6 versions - Latest release: 4 months ago - 1 dependent package - 20.8 thousand downloads total - 1 maintainer
RGSEA 1.44.0
Random Gene Set Enrichment Analysis6 versions - Latest release: 4 months ago - 25 thousand downloads total - 1 maintainer
randRotation 1.22.0
Random Rotation Methods for High Dimensional Data with Batch Structure6 versions - Latest release: 4 months ago - 9.43 thousand downloads total - 0 stars on GitHub - 1 maintainer
HDTD 1.44.0
Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Trans...6 versions - Latest release: 4 months ago - 19.6 thousand downloads total - 1 stars on GitHub - 1 maintainer
XAItest 1.2.0
XAItest: Enhancing Feature Discovery with eXplainable AI4 versions - Latest release: 4 months ago - 2.59 thousand downloads total - 1 stars on GitHub - 1 maintainer
PAIRADISE 1.26.0
PAIRADISE: Paired analysis of differential isoform expression7 versions - Latest release: 4 months ago - 14.8 thousand downloads total - 2 maintainers
decompTumor2Sig 2.26.0
Decomposition of individual tumors into mutational signatures by signature refitting6 versions - Latest release: 4 months ago - 1 dependent package - 17.4 thousand downloads total - 1 maintainer
granulator 1.17.0
Rapid benchmarking of methods for *in silico* deconvolution of bulk RNA-seq data6 versions - Latest release: 4 months ago - 1 dependent package - 12.9 thousand downloads total - 3 stars on GitHub - 1 maintainer
IWTomics 1.34.1
Interval-Wise Testing for Omics Data7 versions - Latest release: about 2 months ago - 18 thousand downloads total - 1 maintainer
Top 5.8% on bioconductor.org
6 versions - Latest release: 4 months ago - 3 dependent packages - 59.7 thousand downloads total - 1 maintainer
fabia 2.56.0
FABIA: Factor Analysis for Bicluster Acquisition6 versions - Latest release: 4 months ago - 3 dependent packages - 59.7 thousand downloads total - 1 maintainer
Top 3.6% on bioconductor.org
6 versions - Latest release: 4 months ago - 3 dependent packages - 216 thousand downloads total - 141 stars on GitHub - 1 maintainer
ballgown 2.42.0
Flexible, isoform-level differential expression analysis6 versions - Latest release: 4 months ago - 3 dependent packages - 216 thousand downloads total - 141 stars on GitHub - 1 maintainer
Uniquorn 2.30.0
Identification of cancer cell lines based on their weighted mutational/ variational fingerprint6 versions - Latest release: 4 months ago - 17.4 thousand downloads total - 1 maintainer
Harman 1.38.0
The removal of batch effects from datasets using a PCA and constrained optimisation based technique6 versions - Latest release: 4 months ago - 1 dependent package - 31 thousand downloads total - 1 maintainer
gscreend 1.24.0
Analysis of pooled genetic screens7 versions - Latest release: 4 months ago - 11.1 thousand downloads total - 11 stars on GitHub - 1 maintainer
EmpiricalBrownsMethod 1.38.0
Uses Brown's method to combine p-values from dependent tests6 versions - Latest release: 4 months ago - 2 dependent packages - 23.2 thousand downloads total - 22 stars on GitHub - 1 maintainer
signeR 2.12.0
Empirical Bayesian approach to mutational signature discovery6 versions - Latest release: 4 months ago - 22.5 thousand downloads total - 13 stars on GitHub - 1 maintainer
MultiMed 2.32.0
Testing multiple biological mediators simultaneously6 versions - Latest release: 4 months ago - 20.7 thousand downloads total - 1 maintainer
TFARM 1.32.0
Transcription Factors Association Rules Miner6 versions - Latest release: 4 months ago - 14.2 thousand downloads total - 1 maintainer
OpenStats 1.22.0
A Robust and Scalable Software Package for Reproducible Analysis of High-Throughput genotype-phen...6 versions - Latest release: 4 months ago - 9.71 thousand downloads total - 1 maintainer
RUVnormalize 1.44.0
RUV for normalization of expression array data6 versions - Latest release: 4 months ago - 24.5 thousand downloads total - 1 maintainer
BiocSklearn 1.32.0
interface to python sklearn via Rstudio reticulate7 versions - Latest release: 4 months ago - 24.5 thousand downloads total - 1 maintainer
MetaCyto 1.32.0
MetaCyto: A package for meta-analysis of cytometry data6 versions - Latest release: 4 months ago - 17.1 thousand downloads total - 1 maintainer
GSAR 1.44.0
Gene Set Analysis in R6 versions - Latest release: 4 months ago - 32.1 thousand downloads total - 2 maintainers
HiLDA 1.24.0
Conducting statistical inference on comparing the mutational exposures of mutational signatures b...6 versions - Latest release: 4 months ago - 1 dependent package - 12.6 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 4.2% on bioconductor.org
6 versions - Latest release: 4 months ago - 6 dependent packages - 116 thousand downloads total - 1 maintainer
EBSeq 2.8.0
An R package for gene and isoform differential expression analysis of RNA-seq data6 versions - Latest release: 4 months ago - 6 dependent packages - 116 thousand downloads total - 1 maintainer
BioQC 1.38.0
Detect tissue heterogeneity in expression profiles with gene sets6 versions - Latest release: 4 months ago - 28.4 thousand downloads total - 5 stars on GitHub - 1 maintainer
synergyfinder 3.18.0
Calculate and Visualize Synergy Scores for Drug Combinations7 versions - Latest release: 4 months ago - 36 thousand downloads total - 1 maintainer
quantiseqr 1.18.0
Quantification of the Tumor Immune contexture from RNA-seq data6 versions - Latest release: 4 months ago - 2 dependent packages - 35.9 thousand downloads total - 1 maintainer
receptLoss 1.21.0
Unsupervised Identification of Genes with Expression Loss in Subsets of Tumors6 versions - Latest release: 4 months ago - 8.5 thousand downloads total - 1 maintainer
treekoR 1.18.0
Cytometry Cluster Hierarchy and Cellular-to-phenotype Associations6 versions - Latest release: 4 months ago - 9.8 thousand downloads total - 1 maintainer
PhenStat 2.46.0
Statistical analysis of phenotypic data6 versions - Latest release: 4 months ago - 24.3 thousand downloads total - 1 maintainer
SomaticSignatures 2.46.0
Somatic Signatures6 versions - Latest release: 4 months ago - 1 dependent package - 56.5 thousand downloads total - 22 stars on GitHub - 1 maintainer
midasHLA 1.18.0
R package for immunogenomics data handling and association analysis6 versions - Latest release: 4 months ago - 11.6 thousand downloads total - 1 maintainer
MDTS 1.30.0
Detection of de novo deletion in targeted sequencing trios6 versions - Latest release: 4 months ago - 13.8 thousand downloads total - 1 maintainer
ClusterSignificance 1.38.0
The ClusterSignificance package provides tools to assess if class clusters in dimensionality redu...6 versions - Latest release: 4 months ago - 18 thousand downloads total - 0 stars on GitHub - 1 maintainer
beer 1.14.1
Bayesian Enrichment Estimation in R6 versions - Latest release: 4 months ago - 8.83 thousand downloads total - 11 stars on GitHub - 1 maintainer
metaCCA 1.38.0
Summary Statistics-Based Multivariate Meta-Analysis of Genome-Wide Association Studies Using Cano...6 versions - Latest release: 4 months ago - 19.3 thousand downloads total - 1 maintainer
cpvSNP 1.42.0
Gene set analysis methods for SNP association p-values that lie in genes in given gene sets6 versions - Latest release: 4 months ago - 21.1 thousand downloads total - 1 maintainer
deltaCaptureC 1.24.0
This Package Discovers Meso-scale Chromatin Remodeling from 3C Data7 versions - Latest release: 4 months ago - 10.6 thousand downloads total - 1 maintainer
Top 3.1% on bioconductor.org
6 versions - Latest release: 4 months ago - 4 dependent packages - 127 thousand downloads total - 1 maintainer
RankProd 3.36.0
Rank Product method for identifying differentially expressed genes with application in meta-analysis6 versions - Latest release: 4 months ago - 4 dependent packages - 127 thousand downloads total - 1 maintainer
LipidTrend 1.0.0
LipidTrend: Analysis and Visualization of Lipid Feature Tendencies1 version - Latest release: 5 months ago - 1.65 thousand downloads total - 0 stars on GitHub - 1 maintainer
dStruct 1.16.0
Identifying differentially reactive regions from RNA structurome profiling data6 versions - Latest release: 4 months ago - 7.68 thousand downloads total - 2 stars on GitHub - 1 maintainer
BUSseq 1.16.0
Batch Effect Correction with Unknow Subtypes for scRNA-seq data6 versions - Latest release: 4 months ago - 9.24 thousand downloads total - 0 stars on GitHub - 1 maintainer
iasva 1.28.0
Iteratively Adjusted Surrogate Variable Analysis6 versions - Latest release: 4 months ago - 14.2 thousand downloads total - 2 maintainers
ASSET 2.28.0
An R package for subset-based association analysis of heterogeneous traits and subtypes6 versions - Latest release: 4 months ago - 1 dependent package - 32.3 thousand downloads total - 1 maintainer
Related Keywords
Software
183
GeneExpression
60
DifferentialExpression
46
Sequencing
44
ImmunoOncology
36
RNASeq
33
Clustering
30
Visualization
27
Regression
24
MultipleComparison
23
Genetics
23
SingleCell
22
Classification
22
Preprocessing
19
Microarray
18
Network
17
Bayesian
17
Transcriptomics
17
BatchEffect
15
BiologicalQuestion
15
Transcription
14
PrincipalComponent
14
GraphAndNetwork
13
Normalization
13
DimensionReduction
13
GenomeWideAssociation
11
Pathways
11
FlowCytometry
11
DNAMethylation
10
GeneSetEnrichment
10
r
9
FeatureExtraction
8
DataImport
8
MassSpectrometry
8
Proteomics
8
Spatial
8
SNP
7
DifferentialMethylation
7
AlternativeSplicing
7
CellBasedAssays
7
GenomicVariation
7
bioconductor
7
Coverage
7
CellBiology
7
Metabolomics
6
QualityControl
6
Survival
6
NetworkEnrichment
6
WholeGenome
6
bioinformatics
6
SomaticMutation
6
DifferentialSplicing
6
GeneRegulation
6
Technology
5
GeneTarget
5
Epigenetics
5
SystemsBiology
5
BiomedicalInformatics
5
MethylationArray
5
ResearchField
5
TimeCourse
5
bioconductor-package
5
Infrastructure
4
ExperimentalDesign
4
WorkflowStep
4
r-package
4
KEGG
4
DNASeq
4
Microbiome
4
HiddenMarkovModel
4
NetworkInference
3
rstats
3
MethylSeq
3
GenomeAnnotation
3
Annotation
3
FunctionalGenomics
3
CopyNumberVariation
3
bioconductor-packages
2
snp
2
missing-data
2
methylation
2
mRNAMicroarray
2
dna-methylation
2
simulation
2
nucleosomes
2
GenePrediction
2
MathematicalBiology
2
Alignment
2
Lipidomics
2
DataRepresentation
2
MicroRNAArray
2
ExomeSeq
2
machine-learning
2
FunctionalPrediction
2
inheritance
2
GO
2
statistics
2
ChIPSeq
2
ProprietaryPlatforms
1
TwoChannel
1