bioconductor.org "StatisticalMethod" keyword
kmcut 1.4.0
Optimized Kaplan Meier analysis and identification and validation of prognostic biomarkers3 versions - Latest release: 5 months ago - 3.96 thousand downloads total - 1 maintainer
Top 1.7% on bioconductor.org
7 versions - Latest release: 6 months ago - 43 dependent packages - 1.2 million downloads total - 3 maintainers
sva 3.58.0
Surrogate Variable Analysis7 versions - Latest release: 6 months ago - 43 dependent packages - 1.2 million downloads total - 3 maintainers
iCARE 1.38.0
Individualized Coherent Absolute Risk Estimation (iCARE)6 versions - Latest release: 5 months ago - 22.3 thousand downloads total - 1 maintainer
MultiMed 2.32.0
Testing multiple biological mediators simultaneously6 versions - Latest release: 5 months ago - 21.5 thousand downloads total - 1 maintainer
MCbiclust 1.34.0
Massive correlating biclusters for gene expression data and associated methods6 versions - Latest release: 5 months ago - 19.4 thousand downloads total - 1 maintainer
STADyUM 1.0.2
Statistical Transcriptome Analysis under a Dynamic Unified Model2 versions - Latest release: 4 months ago - 1.59 thousand downloads total - 1 stars on GitHub - 1 maintainer
BiocSklearn 1.32.0
interface to python sklearn via Rstudio reticulate7 versions - Latest release: 5 months ago - 25.2 thousand downloads total - 1 maintainer
MetaCyto 1.32.0
MetaCyto: A package for meta-analysis of cytometry data6 versions - Latest release: 5 months ago - 17.9 thousand downloads total - 1 maintainer
randRotation 1.22.0
Random Rotation Methods for High Dimensional Data with Batch Structure6 versions - Latest release: 5 months ago - 9.97 thousand downloads total - 0 stars on GitHub - 1 maintainer
bacon 1.38.0
Controlling bias and inflation in association studies using the empirical null distribution6 versions - Latest release: 5 months ago - 31.2 thousand downloads total - 1 maintainer
RGSEA 1.44.0
Random Gene Set Enrichment Analysis6 versions - Latest release: 5 months ago - 25.9 thousand downloads total - 1 maintainer
decompTumor2Sig 2.26.0
Decomposition of individual tumors into mutational signatures by signature refitting6 versions - Latest release: 5 months ago - 1 dependent package - 18.1 thousand downloads total - 1 maintainer
pageRank 1.20.0
Temporal and Multiplex PageRank for Gene Regulatory Network Analysis6 versions - Latest release: 5 months ago - 9.98 thousand downloads total - 0 stars on GitHub - 1 maintainer
synergyfinder 3.18.0
Calculate and Visualize Synergy Scores for Drug Combinations7 versions - Latest release: 5 months ago - 36.9 thousand downloads total - 1 maintainer
PAIRADISE 1.26.0
PAIRADISE: Paired analysis of differential isoform expression7 versions - Latest release: 5 months ago - 15.4 thousand downloads total - 2 maintainers
ClusterSignificance 1.38.0
The ClusterSignificance package provides tools to assess if class clusters in dimensionality redu...6 versions - Latest release: 4 months ago - 18.7 thousand downloads total - 0 stars on GitHub - 1 maintainer
receptLoss 1.21.0
Unsupervised Identification of Genes with Expression Loss in Subsets of Tumors6 versions - Latest release: 5 months ago - 8.77 thousand downloads total - 1 maintainer
RUVnormalize 1.44.0
RUV for normalization of expression array data6 versions - Latest release: 5 months ago - 25.3 thousand downloads total - 1 maintainer
stageR 1.32.0
stageR: stage-wise analysis of high throughput gene expression data in R7 versions - Latest release: 5 months ago - 2 dependent packages - 35 thousand downloads total - 1 maintainer
IWTomics 1.34.1
Interval-Wise Testing for Omics Data7 versions - Latest release: 2 months ago - 18.7 thousand downloads total - 1 maintainer
TFARM 1.32.0
Transcription Factors Association Rules Miner6 versions - Latest release: 5 months ago - 14.9 thousand downloads total - 1 maintainer
Top 3.6% on bioconductor.org
6 versions - Latest release: 5 months ago - 3 dependent packages - 221 thousand downloads total - 141 stars on GitHub - 1 maintainer
ballgown 2.42.0
Flexible, isoform-level differential expression analysis6 versions - Latest release: 5 months ago - 3 dependent packages - 221 thousand downloads total - 141 stars on GitHub - 1 maintainer
Top 5.2% on bioconductor.org
6 versions - Latest release: 5 months ago - 1 dependent package - 85.1 thousand downloads total - 40 stars on GitHub - 1 maintainer
GENESIS 2.40.0
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzi...6 versions - Latest release: 5 months ago - 1 dependent package - 85.1 thousand downloads total - 40 stars on GitHub - 1 maintainer
IsoformSwitchAnalyzeR 2.10.0
Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- a...6 versions - Latest release: 5 months ago - 52.1 thousand downloads total - 1 maintainer
MDTS 1.30.0
Detection of de novo deletion in targeted sequencing trios6 versions - Latest release: 5 months ago - 14.5 thousand downloads total - 1 maintainer
Top 5.8% on bioconductor.org
6 versions - Latest release: 5 months ago - 3 dependent packages - 60.7 thousand downloads total - 1 maintainer
fabia 2.56.0
FABIA: Factor Analysis for Bicluster Acquisition6 versions - Latest release: 5 months ago - 3 dependent packages - 60.7 thousand downloads total - 1 maintainer
granulator 1.17.0
Rapid benchmarking of methods for *in silico* deconvolution of bulk RNA-seq data6 versions - Latest release: 5 months ago - 1 dependent package - 13.2 thousand downloads total - 3 stars on GitHub - 1 maintainer
BioQC 1.38.0
Detect tissue heterogeneity in expression profiles with gene sets6 versions - Latest release: 5 months ago - 29.3 thousand downloads total - 5 stars on GitHub - 1 maintainer
ClustAll 1.6.0
ClustAll: Data driven strategy to robustly identify stratification of patients within complex dis...5 versions - Latest release: 5 months ago - 5.57 thousand downloads total - 1 maintainer
Top 3.1% on bioconductor.org
6 versions - Latest release: 5 months ago - 4 dependent packages - 128 thousand downloads total - 1 maintainer
RankProd 3.36.0
Rank Product method for identifying differentially expressed genes with application in meta-analysis6 versions - Latest release: 5 months ago - 4 dependent packages - 128 thousand downloads total - 1 maintainer
EmpiricalBrownsMethod 1.38.0
Uses Brown's method to combine p-values from dependent tests6 versions - Latest release: 5 months ago - 2 dependent packages - 23.9 thousand downloads total - 22 stars on GitHub - 1 maintainer
gscreend 1.24.0
Analysis of pooled genetic screens7 versions - Latest release: 5 months ago - 11.7 thousand downloads total - 11 stars on GitHub - 1 maintainer
XAItest 1.2.2
XAItest: Enhancing Feature Discovery with eXplainable AI5 versions - Latest release: 5 days ago - 2.97 thousand downloads total - 1 stars on GitHub - 1 maintainer
metaCCA 1.38.0
Summary Statistics-Based Multivariate Meta-Analysis of Genome-Wide Association Studies Using Cano...6 versions - Latest release: 5 months ago - 19.9 thousand downloads total - 1 maintainer
epimutacions 1.14.0
Robust outlier identification for DNA methylation data7 versions - Latest release: 5 months ago - 9.01 thousand downloads total - 0 stars on GitHub - 1 maintainer
OpenStats 1.22.0
A Robust and Scalable Software Package for Reproducible Analysis of High-Throughput genotype-phen...6 versions - Latest release: 5 months ago - 10.2 thousand downloads total - 1 maintainer
midasHLA 1.18.0
R package for immunogenomics data handling and association analysis6 versions - Latest release: 5 months ago - 12 thousand downloads total - 1 maintainer
signeR 2.12.0
Empirical Bayesian approach to mutational signature discovery6 versions - Latest release: 5 months ago - 23.3 thousand downloads total - 13 stars on GitHub - 1 maintainer
quantiseqr 1.18.0
Quantification of the Tumor Immune contexture from RNA-seq data6 versions - Latest release: 5 months ago - 2 dependent packages - 38.1 thousand downloads total - 1 maintainer
beer 1.14.1
Bayesian Enrichment Estimation in R6 versions - Latest release: 5 months ago - 9.4 thousand downloads total - 11 stars on GitHub - 1 maintainer
treekoR 1.18.0
Cytometry Cluster Hierarchy and Cellular-to-phenotype Associations6 versions - Latest release: 5 months ago - 10.5 thousand downloads total - 1 maintainer
iasva 1.28.0
Iteratively Adjusted Surrogate Variable Analysis6 versions - Latest release: 5 months ago - 14.8 thousand downloads total - 2 maintainers
PPInfer 1.36.0
Inferring functionally related proteins using protein interaction networks6 versions - Latest release: 5 months ago - 1 dependent package - 21.5 thousand downloads total - 1 maintainer
HiLDA 1.24.0
Conducting statistical inference on comparing the mutational exposures of mutational signatures b...6 versions - Latest release: 5 months ago - 1 dependent package - 13.3 thousand downloads total - 3 stars on GitHub - 1 maintainer
Harman 1.38.0
The removal of batch effects from datasets using a PCA and constrained optimisation based technique6 versions - Latest release: 5 months ago - 1 dependent package - 31.8 thousand downloads total - 1 maintainer
HDTD 1.44.0
Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Trans...6 versions - Latest release: 5 months ago - 20.8 thousand downloads total - 1 stars on GitHub - 1 maintainer
SomaticSignatures 2.46.0
Somatic Signatures6 versions - Latest release: 5 months ago - 1 dependent package - 57.5 thousand downloads total - 22 stars on GitHub - 1 maintainer
HIBAG 1.46.0
HLA Genotype Imputation with Attribute Bagging8 versions - Latest release: 5 months ago - 31.5 thousand downloads total - 28 stars on GitHub - 1 maintainer
randPack 1.56.0
Randomization routines for Clinical Trials6 versions - Latest release: 5 months ago - 30 thousand downloads total - 1 maintainer
MOSClip 1.4.0
Multi Omics Survival Clip6 versions - Latest release: 5 months ago - 4.05 thousand downloads total - 0 stars on GitHub - 1 maintainer
TMixClust 1.32.0
Time Series Clustering of Gene Expression with Gaussian Mixed-Effects Models and Smoothing Splines6 versions - Latest release: 5 months ago - 17.6 thousand downloads total - 1 maintainer
BUSseq 1.16.0
Batch Effect Correction with Unknow Subtypes for scRNA-seq data6 versions - Latest release: 5 months ago - 9.74 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 4.2% on bioconductor.org
6 versions - Latest release: 5 months ago - 6 dependent packages - 117 thousand downloads total - 1 maintainer
EBSeq 2.8.0
An R package for gene and isoform differential expression analysis of RNA-seq data6 versions - Latest release: 5 months ago - 6 dependent packages - 117 thousand downloads total - 1 maintainer
mosbi 1.16.0
Molecular Signature identification using Biclustering6 versions - Latest release: 5 months ago - 9.36 thousand downloads total - 1 maintainer
GSAR 1.44.0
Gene Set Analysis in R6 versions - Latest release: 5 months ago - 33.1 thousand downloads total - 2 maintainers
peco 1.22.0
A Supervised Approach for **P**r**e**dicting **c**ell Cycle Pr**o**gression using scRNA-seq data6 versions - Latest release: 5 months ago - 11 thousand downloads total - 12 stars on GitHub - 1 maintainer
CytoDx 1.30.0
Robust prediction of clinical outcomes using cytometry data without cell gating6 versions - Latest release: 5 months ago - 15.8 thousand downloads total - 1 maintainer
deltaCaptureC 1.24.0
This Package Discovers Meso-scale Chromatin Remodeling from 3C Data7 versions - Latest release: 5 months ago - 11.1 thousand downloads total - 1 maintainer
PhenStat 2.46.0
Statistical analysis of phenotypic data6 versions - Latest release: 5 months ago - 24.9 thousand downloads total - 1 maintainer
divergence 1.26.0
Divergence: Functionality for assessing omics data by divergence with respect to a baseline6 versions - Latest release: 5 months ago - 11.5 thousand downloads total - 2 maintainers
ASSET 2.28.0
An R package for subset-based association analysis of heterogeneous traits and subtypes6 versions - Latest release: 5 months ago - 1 dependent package - 33.1 thousand downloads total - 1 maintainer
cpvSNP 1.42.0
Gene set analysis methods for SNP association p-values that lie in genes in given gene sets6 versions - Latest release: 5 months ago - 21.8 thousand downloads total - 1 maintainer
LipidTrend 1.0.0
LipidTrend: Analysis and Visualization of Lipid Feature Tendencies1 version - Latest release: 5 months ago - 1.92 thousand downloads total - 0 stars on GitHub - 1 maintainer
CytoGLMM 1.18.0
Conditional Differential Analysis for Flow and Mass Cytometry Experiments7 versions - Latest release: 5 months ago - 1 dependent package - 10.3 thousand downloads total - 2 stars on GitHub - 1 maintainer
DeMixT 1.26.0
Cell type-specific deconvolution of heterogeneous tumor samples with two or three components usin...6 versions - Latest release: 5 months ago - 16 thousand downloads total - 1 maintainer
dStruct 1.16.0
Identifying differentially reactive regions from RNA structurome profiling data6 versions - Latest release: 5 months ago - 8.18 thousand downloads total - 2 stars on GitHub - 1 maintainer
DExMA 1.18.0
Differential Expression Meta-Analysis7 versions - Latest release: 5 months ago - 10.3 thousand downloads total - 1 maintainer
waddR 1.24.0
Statistical tests for detecting differential distributions based on the 2-Wasserstein distance6 versions - Latest release: 5 months ago - 11.5 thousand downloads total - 27 stars on GitHub - 1 maintainer
ROCpAI 1.22.0
Receiver Operating Characteristic Partial Area Indexes for evaluating classifiers6 versions - Latest release: 5 months ago - 10.3 thousand downloads total - 0 stars on GitHub - 1 maintainer
ORFhunteR 1.18.0
Predict open reading frames in nucleotide sequences6 versions - Latest release: 5 months ago - 9.65 thousand downloads total - 1 stars on GitHub - 1 maintainer
profileScoreDist 1.38.0
Profile score distributions6 versions - Latest release: 5 months ago - 16.2 thousand downloads total - 1 maintainer
Lheuristic 1.2.0
Detection of scatterplots with L-shaped pattern2 versions - Latest release: 5 months ago - 2.61 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 3.2% on bioconductor.org
8 versions - Latest release: 5 months ago - 11 dependent packages - 273 thousand downloads total - 108 stars on GitHub - 1 maintainer
SNPRelate 1.44.0
Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data8 versions - Latest release: 5 months ago - 11 dependent packages - 273 thousand downloads total - 108 stars on GitHub - 1 maintainer
missRows 1.30.0
Handling Missing Individuals in Multi-Omics Data Integration6 versions - Latest release: 5 months ago - 14.2 thousand downloads total - 1 maintainer
CBN2Path 1.0.0
"CBN2Path: an R/Bioconductor package for the analysis of cancer progression pathways using Conjun...2 versions - Latest release: 4 months ago - 1.49 thousand downloads total - 0 stars on GitHub - 1 maintainer
MetID 1.28.0
Network-based prioritization of putative metabolite IDs6 versions - Latest release: 5 months ago - 12.6 thousand downloads total - 1 stars on GitHub - 1 maintainer
spillR 1.6.0
Spillover Compensation in Mass Cytometry Data6 versions - Latest release: 5 months ago - 5.4 thousand downloads total - 1 maintainer
SETA 1.0.0
Single Cell Ecological Taxonomic Analysis1 version - Latest release: 5 months ago - 1.19 thousand downloads total - 1 maintainer
survtype 1.26.0
Subtype Identification with Survival Data6 versions - Latest release: 5 months ago - 12.2 thousand downloads total - 1 maintainer
BUScorrect 1.28.0
Batch Effects Correction with Unknown Subtypes6 versions - Latest release: 5 months ago - 13.4 thousand downloads total - 1 maintainer
STATegRa 1.46.0
Classes and methods for multi-omics data integration6 versions - Latest release: 5 months ago - 25.1 thousand downloads total - 2 maintainers
deconvR 1.16.0
Simulation and Deconvolution of Omic Profiles7 versions - Latest release: 5 months ago - 11.9 thousand downloads total - 9 stars on GitHub - 1 maintainer
Top 9.7% on bioconductor.org
7 versions - Latest release: 5 months ago - 1 dependent package - 61.5 thousand downloads total - 222 stars on GitHub - 1 maintainer
muscat 1.24.0
Multi-sample multi-group scRNA-seq data analysis tools7 versions - Latest release: 5 months ago - 1 dependent package - 61.5 thousand downloads total - 222 stars on GitHub - 1 maintainer
pandaR 1.42.0
PANDA Algorithm6 versions - Latest release: 5 months ago - 1 dependent package - 26.2 thousand downloads total - 2 maintainers
phosphonormalizer 1.34.0
Compensates for the bias introduced by median normalization in6 versions - Latest release: 5 months ago - 15.8 thousand downloads total - 1 maintainer
lefser 1.20.2
R implementation of the LEfSE method for microbiome biomarker discovery8 versions - Latest release: 5 months ago - 1 dependent package - 95.2 thousand downloads total - 42 stars on GitHub - 1 maintainer
AMARETTO 1.26.0
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis an...6 versions - Latest release: 5 months ago - 18 thousand downloads total - 1 maintainer
srnadiff 1.30.0
Finding differentially expressed unannotated genomic regions from RNA-seq data7 versions - Latest release: 5 months ago - 14.4 thousand downloads total - 1 maintainer
Top 4.9% on bioconductor.org
11 versions - Latest release: 4 months ago - 5 dependent packages - 86 thousand downloads total - 70 stars on GitHub - 1 maintainer
CATALYST 1.34.1
Cytometry dATa anALYSis Tools11 versions - Latest release: 4 months ago - 5 dependent packages - 86 thousand downloads total - 70 stars on GitHub - 1 maintainer
Oscope 1.40.0
Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell R...6 versions - Latest release: 5 months ago - 1 dependent package - 25 thousand downloads total - 1 maintainer
Top 7.1% on bioconductor.org
6 versions - Latest release: 5 months ago - 30 thousand downloads total - 87 stars on GitHub - 1 maintainer
TitanCNA 1.48.0
Subclonal copy number and LOH prediction from whole genome sequencing of tumours6 versions - Latest release: 5 months ago - 30 thousand downloads total - 87 stars on GitHub - 1 maintainer
BioCor 1.34.0
Functional Similarities6 versions - Latest release: 5 months ago - 22.6 thousand downloads total - 14 stars on GitHub - 1 maintainer
mbQTL 1.10.0
mbQTL: A package for SNP-Taxa mGWAS analysis6 versions - Latest release: 5 months ago - 5.95 thousand downloads total - 1 maintainer
netboost 2.18.1
Network Analysis Supported by Boosting7 versions - Latest release: 2 months ago - 11.4 thousand downloads total - 1 maintainer
CyTOFpower 1.16.0
Power analysis for CyTOF experiments7 versions - Latest release: 5 months ago - 6.61 thousand downloads total - 1 maintainer
onlineFDR 2.18.0
Online error rate control6 versions - Latest release: 5 months ago - 11.2 thousand downloads total - 14 stars on GitHub - 1 maintainer
Summix 2.16.0
Summix2: A suite of methods to estimate, adjust, and leverage substructure in genetic summary data6 versions - Latest release: 5 months ago - 8.17 thousand downloads total - 1 maintainer
tpSVG 1.6.0
Thin plate models to detect spatially variable genes5 versions - Latest release: 5 months ago - 5.25 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 3.7% on bioconductor.org
6 versions - Latest release: 5 months ago - 2 dependent packages - 112 thousand downloads total - 1 maintainer
safe 3.50.0
Significance Analysis of Function and Expression6 versions - Latest release: 5 months ago - 2 dependent packages - 112 thousand downloads total - 1 maintainer
CIMICE 1.18.0
CIMICE-R: (Markov) Chain Method to Inferr Cancer Evolution6 versions - Latest release: 5 months ago - 9.09 thousand downloads total - 0 stars on GitHub - 1 maintainer
Related Keywords
Software
183
GeneExpression
60
DifferentialExpression
46
Sequencing
44
ImmunoOncology
36
RNASeq
33
Clustering
30
Visualization
27
Regression
24
MultipleComparison
23
Genetics
23
SingleCell
22
Classification
22
Preprocessing
19
Microarray
18
Transcriptomics
17
Network
17
Bayesian
17
BatchEffect
15
BiologicalQuestion
15
PrincipalComponent
14
Transcription
14
DimensionReduction
13
GraphAndNetwork
13
Normalization
13
GenomeWideAssociation
11
FlowCytometry
11
Pathways
11
DNAMethylation
10
GeneSetEnrichment
10
r
9
FeatureExtraction
8
MassSpectrometry
8
Spatial
8
Proteomics
8
DataImport
8
bioconductor
7
Coverage
7
DifferentialMethylation
7
AlternativeSplicing
7
SNP
7
CellBiology
7
CellBasedAssays
7
GenomicVariation
7
Survival
6
Metabolomics
6
WholeGenome
6
GeneRegulation
6
DifferentialSplicing
6
bioinformatics
6
QualityControl
6
SomaticMutation
6
NetworkEnrichment
6
TimeCourse
5
ResearchField
5
Epigenetics
5
bioconductor-package
5
Technology
5
MethylationArray
5
SystemsBiology
5
BiomedicalInformatics
5
GeneTarget
5
KEGG
4
WorkflowStep
4
ExperimentalDesign
4
DNASeq
4
Microbiome
4
Infrastructure
4
r-package
4
HiddenMarkovModel
4
GenomeAnnotation
3
Annotation
3
CopyNumberVariation
3
rstats
3
MethylSeq
3
FunctionalGenomics
3
NetworkInference
3
machine-learning
2
simulation
2
dna-methylation
2
GO
2
nucleosomes
2
DataRepresentation
2
Lipidomics
2
inheritance
2
methylation
2
missing-data
2
MathematicalBiology
2
bioconductor-packages
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ExomeSeq
2
MicroRNAArray
2
Alignment
2
snp
2
GenePrediction
2
FunctionalPrediction
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statistics
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ChIPSeq
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mRNAMicroarray
2
missing-values
1
rpackage
1