bioconductor.org "StatisticalMethod" keyword
View the packages on the bioconductor.org package registry that are tagged with the "StatisticalMethod" keyword.
PAIRADISE 1.26.0
PAIRADISE: Paired analysis of differential isoform expression7 versions - Latest release: 2 months ago - 14.3 thousand downloads total - 2 maintainers
RUVnormalize 1.44.0
RUV for normalization of expression array data6 versions - Latest release: 2 months ago - 24.1 thousand downloads total - 1 maintainer
XAItest 1.2.0
XAItest: Enhancing Feature Discovery with eXplainable AI4 versions - Latest release: 3 months ago - 2.37 thousand downloads total - 1 stars on GitHub - 1 maintainer
Harman 1.38.0
The removal of batch effects from datasets using a PCA and constrained optimisation based technique6 versions - Latest release: 2 months ago - 1 dependent package - 30.3 thousand downloads total - 1 maintainer
AMARETTO 1.26.0
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis an...6 versions - Latest release: 3 months ago - 16.9 thousand downloads total - 1 maintainer
CytoDx 1.30.0
Robust prediction of clinical outcomes using cytometry data without cell gating6 versions - Latest release: 2 months ago - 14.7 thousand downloads total - 1 maintainer
survtype 1.26.0
Subtype Identification with Survival Data6 versions - Latest release: 2 months ago - 11.2 thousand downloads total - 1 maintainer
BiocSklearn 1.32.0
interface to python sklearn via Rstudio reticulate7 versions - Latest release: 2 months ago - 24.1 thousand downloads total - 1 maintainer
glmSparseNet 1.28.0
Network Centrality Metrics for Elastic-Net Regularized Models7 versions - Latest release: 3 months ago - 107 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 3.1% on bioconductor.org
6 versions - Latest release: 2 months ago - 4 dependent packages - 126 thousand downloads total - 1 maintainer
RankProd 3.36.0
Rank Product method for identifying differentially expressed genes with application in meta-analysis6 versions - Latest release: 2 months ago - 4 dependent packages - 126 thousand downloads total - 1 maintainer
randRotation 1.22.0
Random Rotation Methods for High Dimensional Data with Batch Structure6 versions - Latest release: 3 months ago - 9.08 thousand downloads total - 0 stars on GitHub - 1 maintainer
waddR 1.24.0
Statistical tests for detecting differential distributions based on the 2-Wasserstein distance6 versions - Latest release: 3 months ago - 10.9 thousand downloads total - 27 stars on GitHub - 1 maintainer
Top 5.8% on bioconductor.org
6 versions - Latest release: 2 months ago - 3 dependent packages - 59.1 thousand downloads total - 1 maintainer
fabia 2.56.0
FABIA: Factor Analysis for Bicluster Acquisition6 versions - Latest release: 2 months ago - 3 dependent packages - 59.1 thousand downloads total - 1 maintainer
flowGraph 1.18.0
Identifying differential cell populations in flow cytometry data accounting for marker frequency6 versions - Latest release: 3 months ago - 8.79 thousand downloads total - 1 stars on GitHub - 1 maintainer
signeR 2.12.0
Empirical Bayesian approach to mutational signature discovery6 versions - Latest release: 3 months ago - 21.9 thousand downloads total - 13 stars on GitHub - 1 maintainer
GSAR 1.44.0
Gene Set Analysis in R6 versions - Latest release: 2 months ago - 31.6 thousand downloads total - 2 maintainers
Lheuristic 1.2.0
Detection of scatterplots with L-shaped pattern2 versions - Latest release: 2 months ago - 2.13 thousand downloads total - 0 stars on GitHub - 1 maintainer
synergyfinder 3.18.0
Calculate and Visualize Synergy Scores for Drug Combinations7 versions - Latest release: 2 months ago - 35.3 thousand downloads total - 1 maintainer
srnadiff 1.30.0
Finding differentially expressed unannotated genomic regions from RNA-seq data7 versions - Latest release: 2 months ago - 13.3 thousand downloads total - 1 maintainer
ROCpAI 1.22.0
Receiver Operating Characteristic Partial Area Indexes for evaluating classifiers6 versions - Latest release: 2 months ago - 9.37 thousand downloads total - 0 stars on GitHub - 1 maintainer
profileScoreDist 1.38.0
Profile score distributions6 versions - Latest release: 2 months ago - 15.1 thousand downloads total - 1 maintainer
PPInfer 1.36.0
Inferring functionally related proteins using protein interaction networks6 versions - Latest release: 2 months ago - 1 dependent package - 20.3 thousand downloads total - 1 maintainer
GPA 1.22.0
GPA (Genetic analysis incorporating Pleiotropy and Annotation)6 versions - Latest release: 3 months ago - 9.5 thousand downloads total - 15 stars on GitHub - 1 maintainer
Top 3.2% on bioconductor.org
8 versions - Latest release: 3 months ago - 11 dependent packages - 267 thousand downloads total - 108 stars on GitHub - 1 maintainer
SNPRelate 1.44.0
Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data8 versions - Latest release: 3 months ago - 11 dependent packages - 267 thousand downloads total - 108 stars on GitHub - 1 maintainer
BEclear 2.26.0
Correction of batch effects in DNA methylation data6 versions - Latest release: 2 months ago - 23.5 thousand downloads total - 5 stars on GitHub - 1 maintainer
DESpace 2.2.2
DESpace: a framework to discover spatially variable genes and differential spatial patterns acros...8 versions - Latest release: about 1 month ago - 7.68 thousand downloads total - 5 stars on GitHub - 1 maintainer
stageR 1.32.0
stageR: stage-wise analysis of high throughput gene expression data in R7 versions - Latest release: 2 months ago - 2 dependent packages - 33.3 thousand downloads total - 1 maintainer
Top 3.6% on bioconductor.org
6 versions - Latest release: 3 months ago - 3 dependent packages - 211 thousand downloads total - 141 stars on GitHub - 1 maintainer
ballgown 2.42.0
Flexible, isoform-level differential expression analysis6 versions - Latest release: 3 months ago - 3 dependent packages - 211 thousand downloads total - 141 stars on GitHub - 1 maintainer
pageRank 1.20.0
Temporal and Multiplex PageRank for Gene Regulatory Network Analysis6 versions - Latest release: 3 months ago - 9.07 thousand downloads total - 0 stars on GitHub - 1 maintainer
lefser 1.20.2
R implementation of the LEfSE method for microbiome biomarker discovery8 versions - Latest release: 3 months ago - 1 dependent package - 92 thousand downloads total - 42 stars on GitHub - 1 maintainer
SETA 1.0.0
Single Cell Ecological Taxonomic Analysis1 version - Latest release: 3 months ago - 688 downloads total - 1 maintainer
CTSV 1.12.0
Identification of cell-type-specific spatially variable genes accounting for excess zeros6 versions - Latest release: 3 months ago - 6.88 thousand downloads total - 2 stars on GitHub - 1 maintainer
BUScorrect 1.28.0
Batch Effects Correction with Unknown Subtypes6 versions - Latest release: 2 months ago - 12.3 thousand downloads total - 1 maintainer
cpvSNP 1.42.0
Gene set analysis methods for SNP association p-values that lie in genes in given gene sets6 versions - Latest release: 2 months ago - 20.5 thousand downloads total - 1 maintainer
mbQTL 1.10.0
mbQTL: A package for SNP-Taxa mGWAS analysis6 versions - Latest release: 3 months ago - 5.61 thousand downloads total - 1 maintainer
Uniquorn 2.30.0
Identification of cancer cell lines based on their weighted mutational/ variational fingerprint6 versions - Latest release: 2 months ago - 16.9 thousand downloads total - 1 maintainer
MCbiclust 1.34.0
Massive correlating biclusters for gene expression data and associated methods6 versions - Latest release: 3 months ago - 17.9 thousand downloads total - 1 maintainer
epimutacions 1.14.0
Robust outlier identification for DNA methylation data7 versions - Latest release: 3 months ago - 7.83 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 5.2% on bioconductor.org
6 versions - Latest release: 3 months ago - 1 dependent package - 83 thousand downloads total - 40 stars on GitHub - 1 maintainer
GENESIS 2.40.0
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzi...6 versions - Latest release: 3 months ago - 1 dependent package - 83 thousand downloads total - 40 stars on GitHub - 1 maintainer
phosphonormalizer 1.34.0
Compensates for the bias introduced by median normalization in6 versions - Latest release: 2 months ago - 14.7 thousand downloads total - 1 maintainer
iCARE 1.38.0
Individualized Coherent Absolute Risk Estimation (iCARE)6 versions - Latest release: 2 months ago - 21.2 thousand downloads total - 1 maintainer
deltaCaptureC 1.24.0
This Package Discovers Meso-scale Chromatin Remodeling from 3C Data7 versions - Latest release: 3 months ago - 10.2 thousand downloads total - 1 maintainer
target 1.24.0
Predict Combined Function of Transcription Factors6 versions - Latest release: 2 months ago - 11 thousand downloads total - 5 stars on GitHub - 1 maintainer
missRows 1.30.0
Handling Missing Individuals in Multi-Omics Data Integration6 versions - Latest release: 2 months ago - 13.2 thousand downloads total - 1 maintainer
quantiseqr 1.18.0
Quantification of the Tumor Immune contexture from RNA-seq data6 versions - Latest release: 2 months ago - 2 dependent packages - 34.6 thousand downloads total - 1 maintainer
MultiMed 2.32.0
Testing multiple biological mediators simultaneously6 versions - Latest release: 2 months ago - 20.3 thousand downloads total - 1 maintainer
tweeDEseq 1.56.0
RNA-seq data analysis using the Poisson-Tweedie family of distributions6 versions - Latest release: 3 months ago - 41.6 thousand downloads total - 0 stars on GitHub - 1 maintainer
iasva 1.28.0
Iteratively Adjusted Surrogate Variable Analysis6 versions - Latest release: 2 months ago - 13.8 thousand downloads total - 2 maintainers
PhenStat 2.46.0
Statistical analysis of phenotypic data6 versions - Latest release: 2 months ago - 24 thousand downloads total - 1 maintainer
spillR 1.6.0
Spillover Compensation in Mass Cytometry Data6 versions - Latest release: 2 months ago - 4.78 thousand downloads total - 1 maintainer
TFARM 1.32.0
Transcription Factors Association Rules Miner6 versions - Latest release: 2 months ago - 13.8 thousand downloads total - 1 maintainer
EmpiricalBrownsMethod 1.38.0
Uses Brown's method to combine p-values from dependent tests6 versions - Latest release: 3 months ago - 2 dependent packages - 22.7 thousand downloads total - 22 stars on GitHub - 1 maintainer
MDTS 1.30.0
Detection of de novo deletion in targeted sequencing trios6 versions - Latest release: 3 months ago - 13.4 thousand downloads total - 1 maintainer
scoup 1.4.0
Simulate Codons with Darwinian Selection Modelled as an OU Process3 versions - Latest release: 3 months ago - 3.09 thousand downloads total - 0 stars on GitHub - 1 maintainer
RGSEA 1.44.0
Random Gene Set Enrichment Analysis6 versions - Latest release: 3 months ago - 24.5 thousand downloads total - 1 maintainer
midasHLA 1.18.0
R package for immunogenomics data handling and association analysis6 versions - Latest release: 3 months ago - 11.3 thousand downloads total - 1 maintainer
HIBAG 1.46.0
HLA Genotype Imputation with Attribute Bagging8 versions - Latest release: 3 months ago - 30 thousand downloads total - 28 stars on GitHub - 1 maintainer
peco 1.22.0
A Supervised Approach for **P**r**e**dicting **c**ell Cycle Pr**o**gression using scRNA-seq data6 versions - Latest release: 3 months ago - 10 thousand downloads total - 12 stars on GitHub - 1 maintainer
IWTomics 1.34.1
Interval-Wise Testing for Omics Data7 versions - Latest release: 5 days ago - 17.4 thousand downloads total - 1 maintainer
IsoformSwitchAnalyzeR 2.10.0
Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- a...6 versions - Latest release: 2 months ago - 49.4 thousand downloads total - 1 maintainer
BioQC 1.38.0
Detect tissue heterogeneity in expression profiles with gene sets6 versions - Latest release: 3 months ago - 27.8 thousand downloads total - 5 stars on GitHub - 1 maintainer
granulator 1.17.0
Rapid benchmarking of methods for *in silico* deconvolution of bulk RNA-seq data6 versions - Latest release: 2 months ago - 1 dependent package - 12.7 thousand downloads total - 3 stars on GitHub - 1 maintainer
FeatSeekR 1.10.0
FeatSeekR an R package for unsupervised feature selection6 versions - Latest release: 3 months ago - 5.82 thousand downloads total - 1 stars on GitHub - 1 maintainer
nucleoSim 1.38.0
Generate synthetic nucleosome maps6 versions - Latest release: 3 months ago - 1 dependent package - 16.9 thousand downloads total - 2 stars on GitHub - 1 maintainer
QUBIC 1.38.0
An R package for qualitative biclustering in support of gene co-expression analyses6 versions - Latest release: 3 months ago - 2 dependent packages - 33.3 thousand downloads total - 4 stars on GitHub - 1 maintainer
STATegRa 1.46.0
Classes and methods for multi-omics data integration6 versions - Latest release: 2 months ago - 23.6 thousand downloads total - 2 maintainers
APL 1.14.0
Association Plots7 versions - Latest release: 3 months ago - 9.25 thousand downloads total - 16 stars on GitHub - 1 maintainer
Top 4.2% on bioconductor.org
6 versions - Latest release: 2 months ago - 6 dependent packages - 115 thousand downloads total - 1 maintainer
EBSeq 2.8.0
An R package for gene and isoform differential expression analysis of RNA-seq data6 versions - Latest release: 2 months ago - 6 dependent packages - 115 thousand downloads total - 1 maintainer
Top 7.1% on bioconductor.org
6 versions - Latest release: 3 months ago - 29 thousand downloads total - 87 stars on GitHub - 1 maintainer
TitanCNA 1.48.0
Subclonal copy number and LOH prediction from whole genome sequencing of tumours6 versions - Latest release: 3 months ago - 29 thousand downloads total - 87 stars on GitHub - 1 maintainer
metaCCA 1.38.0
Summary Statistics-Based Multivariate Meta-Analysis of Genome-Wide Association Studies Using Cano...6 versions - Latest release: 2 months ago - 18.9 thousand downloads total - 1 maintainer
mosbi 1.16.0
Molecular Signature identification using Biclustering6 versions - Latest release: 2 months ago - 8.36 thousand downloads total - 1 maintainer
Top 4.7% on bioconductor.org
7 versions - Latest release: 3 months ago - 161 thousand downloads total - 646 stars on GitHub - 1 maintainer
infercnv 1.26.0
Infer Copy Number Variation from Single-Cell RNA-Seq Data7 versions - Latest release: 3 months ago - 161 thousand downloads total - 646 stars on GitHub - 1 maintainer
treekoR 1.18.0
Cytometry Cluster Hierarchy and Cellular-to-phenotype Associations6 versions - Latest release: 3 months ago - 9.29 thousand downloads total - 1 maintainer
Oscope 1.40.0
Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell R...6 versions - Latest release: 2 months ago - 1 dependent package - 23.8 thousand downloads total - 1 maintainer
TMixClust 1.32.0
Time Series Clustering of Gene Expression with Gaussian Mixed-Effects Models and Smoothing Splines6 versions - Latest release: 3 months ago - 16.4 thousand downloads total - 1 maintainer
VaSP 1.22.0
Quantification and Visualization of Variations of Splicing in Population6 versions - Latest release: 2 months ago - 9.28 thousand downloads total - 3 stars on GitHub - 1 maintainer
MetaCyto 1.32.0
MetaCyto: A package for meta-analysis of cytometry data6 versions - Latest release: 2 months ago - 16.6 thousand downloads total - 1 maintainer
OpenStats 1.22.0
A Robust and Scalable Software Package for Reproducible Analysis of High-Throughput genotype-phen...6 versions - Latest release: 2 months ago - 9.39 thousand downloads total - 1 maintainer
spaSim 1.12.0
Spatial point data simulator for tissue images6 versions - Latest release: 3 months ago - 7.09 thousand downloads total - 2 stars on GitHub - 1 maintainer
ClusterSignificance 1.38.0
The ClusterSignificance package provides tools to assess if class clusters in dimensionality redu...6 versions - Latest release: 2 months ago - 17.6 thousand downloads total - 0 stars on GitHub - 1 maintainer
bacon 1.38.0
Controlling bias and inflation in association studies using the empirical null distribution6 versions - Latest release: 2 months ago - 29.7 thousand downloads total - 1 maintainer
GGPA 1.22.0
graph-GPA: A graphical model for prioritizing GWAS results and investigating pleiotropic architec...6 versions - Latest release: 2 months ago - 9.92 thousand downloads total - 1 stars on GitHub - 1 maintainer
LipidTrend 1.0.0
LipidTrend: Analysis and Visualization of Lipid Feature Tendencies1 version - Latest release: 3 months ago - 1.45 thousand downloads total - 0 stars on GitHub - 1 maintainer
ClustAll 1.6.0
ClustAll: Data driven strategy to robustly identify stratification of patients within complex dis...5 versions - Latest release: 2 months ago - 4.89 thousand downloads total - 1 maintainer
gscreend 1.24.0
Analysis of pooled genetic screens7 versions - Latest release: 3 months ago - 10.7 thousand downloads total - 11 stars on GitHub - 1 maintainer
BANDITS 1.26.0
BANDITS: Bayesian ANalysis of DIfferenTial Splicing8 versions - Latest release: 3 months ago - 1 dependent package - 16.8 thousand downloads total - 18 stars on GitHub - 1 maintainer
BioCor 1.34.0
Functional Similarities6 versions - Latest release: 3 months ago - 21.4 thousand downloads total - 14 stars on GitHub - 1 maintainer
HiLDA 1.24.0
Conducting statistical inference on comparing the mutational exposures of mutational signatures b...6 versions - Latest release: 3 months ago - 1 dependent package - 12 thousand downloads total - 3 stars on GitHub - 1 maintainer
ORFhunteR 1.18.0
Predict open reading frames in nucleotide sequences6 versions - Latest release: 2 months ago - 8.82 thousand downloads total - 1 stars on GitHub - 1 maintainer
CBN2Path 1.0.0
"CBN2Path: an R/Bioconductor package for the analysis of cancer progression pathways using Conjun...2 versions - Latest release: 2 months ago - 949 downloads total - 0 stars on GitHub - 1 maintainer
randPack 1.56.0
Randomization routines for Clinical Trials6 versions - Latest release: 2 months ago - 28.7 thousand downloads total - 1 maintainer
CyTOFpower 1.16.0
Power analysis for CyTOF experiments7 versions - Latest release: 3 months ago - 5.82 thousand downloads total - 1 maintainer
BUSseq 1.16.0
Batch Effect Correction with Unknow Subtypes for scRNA-seq data6 versions - Latest release: 3 months ago - 8.91 thousand downloads total - 0 stars on GitHub - 1 maintainer
methInheritSim 1.32.0
Simulating Whole-Genome Inherited Bisulphite Sequencing Data6 versions - Latest release: 3 months ago - 1 dependent package - 15 thousand downloads total - 2 stars on GitHub - 1 maintainer
deconvR 1.16.0
Simulation and Deconvolution of Omic Profiles7 versions - Latest release: 3 months ago - 10.9 thousand downloads total - 9 stars on GitHub - 1 maintainer
RolDE 1.14.0
RolDE: Robust longitudinal Differential Expression6 versions - Latest release: 3 months ago - 7.39 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 9.7% on bioconductor.org
7 versions - Latest release: 3 months ago - 1 dependent package - 56.1 thousand downloads total - 199 stars on GitHub - 1 maintainer
muscat 1.24.0
Multi-sample multi-group scRNA-seq data analysis tools7 versions - Latest release: 3 months ago - 1 dependent package - 56.1 thousand downloads total - 199 stars on GitHub - 1 maintainer
SomaticSignatures 2.46.0
Somatic Signatures6 versions - Latest release: 3 months ago - 1 dependent package - 55.9 thousand downloads total - 22 stars on GitHub - 1 maintainer
padma 1.20.0
Individualized Multi-Omic Pathway Deviation Scores Using Multiple Factor Analysis8 versions - Latest release: 3 months ago - 9.85 thousand downloads total - 3 stars on GitHub - 1 maintainer
PLSDAbatch 1.6.0
PLSDA-batch4 versions - Latest release: 3 months ago - 5.34 thousand downloads total - 13 stars on GitHub - 1 maintainer
Related Keywords
Software
183
GeneExpression
60
DifferentialExpression
46
Sequencing
44
ImmunoOncology
36
RNASeq
33
Clustering
30
Visualization
27
Regression
24
Genetics
23
MultipleComparison
23
SingleCell
22
Classification
22
Preprocessing
19
Microarray
18
Transcriptomics
17
Network
17
Bayesian
17
BiologicalQuestion
15
BatchEffect
15
Transcription
14
PrincipalComponent
14
DimensionReduction
13
Normalization
13
GraphAndNetwork
13
FlowCytometry
11
Pathways
11
GenomeWideAssociation
11
GeneSetEnrichment
10
DNAMethylation
10
r
9
DataImport
8
Proteomics
8
MassSpectrometry
8
FeatureExtraction
8
Spatial
8
Coverage
7
GenomicVariation
7
bioconductor
7
SNP
7
AlternativeSplicing
7
CellBiology
7
CellBasedAssays
7
DifferentialMethylation
7
WholeGenome
6
NetworkEnrichment
6
DifferentialSplicing
6
bioinformatics
6
GeneRegulation
6
SomaticMutation
6
QualityControl
6
Metabolomics
6
Survival
6
BiomedicalInformatics
5
GeneTarget
5
MethylationArray
5
SystemsBiology
5
ResearchField
5
Technology
5
bioconductor-package
5
Epigenetics
5
TimeCourse
5
Microbiome
4
WorkflowStep
4
DNASeq
4
r-package
4
ExperimentalDesign
4
KEGG
4
Infrastructure
4
HiddenMarkovModel
4
CopyNumberVariation
3
MethylSeq
3
NetworkInference
3
Annotation
3
GenomeAnnotation
3
FunctionalGenomics
3
rstats
3
simulation
2
GO
2
bioconductor-packages
2
nucleosomes
2
Alignment
2
MathematicalBiology
2
machine-learning
2
statistics
2
inheritance
2
FunctionalPrediction
2
GenePrediction
2
MicroRNAArray
2
mRNAMicroarray
2
Lipidomics
2
ChIPSeq
2
snp
2
dna-methylation
2
methylation
2
missing-data
2
ExomeSeq
2
DataRepresentation
2
data-visualization
1
pre-processing
1