bioconductor.org "StatisticalMethod" keyword
plotGrouper 1.30.0
Shiny app GUI wrapper for ggplot with built-in statistical analysis7 versions - Latest release: about 3 hours ago - 13.4 thousand downloads total - 6 stars on GitHub - 1 maintainer
BUSseq 1.18.0
Batch Effect Correction with Unknow Subtypes for scRNA-seq data7 versions - Latest release: about 5 hours ago - 10.5 thousand downloads total - 0 stars on GitHub - 1 maintainer
receptLoss 1.24.0
Unsupervised Identification of Genes with Expression Loss in Subsets of Tumors7 versions - Latest release: about 5 hours ago - 9.06 thousand downloads total - 1 maintainer
STADyUM 1.2.0
Statistical Transcriptome Analysis under a Dynamic Unified Model3 versions - Latest release: about 12 hours ago - 2.03 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 1.7% on bioconductor.org
9 versions - Latest release: 9 days ago - 43 dependent packages - 1.22 million downloads total - 3 maintainers
sva 3.60.0
Surrogate Variable Analysis9 versions - Latest release: 9 days ago - 43 dependent packages - 1.22 million downloads total - 3 maintainers
PhenStat 2.46.0 removed
Statistical analysis of phenotypic data6 versions - Latest release: 6 months ago - 24.9 thousand downloads total - 1 maintainer
missRows 1.32.0
Handling Missing Individuals in Multi-Omics Data Integration7 versions - Latest release: 1 day ago - 15 thousand downloads total - 1 maintainer
mosbi 1.17.0
Molecular Signature identification using Biclustering7 versions - Latest release: 1 day ago - 9.91 thousand downloads total - 1 maintainer
metaCCA 1.40.0
Summary Statistics-Based Multivariate Meta-Analysis of Genome-Wide Association Studies Using Cano...7 versions - Latest release: 1 day ago - 20.6 thousand downloads total - 1 maintainer
MAI 1.18.0
Mechanism-Aware Imputation7 versions - Latest release: 1 day ago - 13.3 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 3.7% on bioconductor.org
7 versions - Latest release: 1 day ago - 2 dependent packages - 114 thousand downloads total - 1 maintainer
safe 3.52.1
Significance Analysis of Function and Expression7 versions - Latest release: 1 day ago - 2 dependent packages - 114 thousand downloads total - 1 maintainer
MOSClip 1.6.0
Multi Omics Survival Clip7 versions - Latest release: 1 day ago - 4.49 thousand downloads total - 0 stars on GitHub - 1 maintainer
onlineFDR 2.20.0
Online error rate control7 versions - Latest release: 1 day ago - 11.9 thousand downloads total - 14 stars on GitHub - 1 maintainer
decompTumor2Sig 2.28.0
Decomposition of individual tumors into mutational signatures by signature refitting7 versions - Latest release: 1 day ago - 1 dependent package - 18.7 thousand downloads total - 1 maintainer
APL 1.16.0
Association Plots8 versions - Latest release: 2 days ago - 10.8 thousand downloads total - 17 stars on GitHub - 1 maintainer
netboost 2.20.0
Network Analysis Supported by Boosting8 versions - Latest release: 2 days ago - 12.1 thousand downloads total - 1 maintainer
nucleoSim 1.40.0
Generate synthetic nucleosome maps7 versions - Latest release: 2 days ago - 1 dependent package - 18.8 thousand downloads total - 2 stars on GitHub - 1 maintainer
OpenStats 1.24.0
A Robust and Scalable Software Package for Reproducible Analysis of High-Throughput genotype-phen...7 versions - Latest release: 2 days ago - 10.7 thousand downloads total - 1 maintainer
GSAR 1.46.0
Gene Set Analysis in R7 versions - Latest release: 2 days ago - 34.1 thousand downloads total - 2 maintainers
midasHLA 1.20.0
R package for immunogenomics data handling and association analysis7 versions - Latest release: 3 days ago - 12.6 thousand downloads total - 1 maintainer
CytoDx 1.32.0
Robust prediction of clinical outcomes using cytometry data without cell gating7 versions - Latest release: 3 days ago - 16.5 thousand downloads total - 1 maintainer
MDTS 1.32.0
Detection of de novo deletion in targeted sequencing trios7 versions - Latest release: 3 days ago - 15.1 thousand downloads total - 1 maintainer
ROCpAI 1.24.0
Receiver Operating Characteristic Partial Area Indexes for evaluating classifiers7 versions - Latest release: 3 days ago - 10.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
signeR 2.14.0
Empirical Bayesian approach to mutational signature discovery7 versions - Latest release: 3 days ago - 24.2 thousand downloads total - 13 stars on GitHub - 1 maintainer
HIBAG 1.48.0
HLA Genotype Imputation with Attribute Bagging9 versions - Latest release: 4 days ago - 32.3 thousand downloads total - 28 stars on GitHub - 1 maintainer
pageRank 1.22.0
Temporal and Multiplex PageRank for Gene Regulatory Network Analysis7 versions - Latest release: 4 days ago - 10.5 thousand downloads total - 0 stars on GitHub - 1 maintainer
granulator 1.20.0
Rapid benchmarking of methods for *in silico* deconvolution of bulk RNA-seq data7 versions - Latest release: 4 days ago - 1 dependent package - 13.4 thousand downloads total - 3 stars on GitHub - 1 maintainer
ClusterSignificance 1.40.0
The ClusterSignificance package provides tools to assess if class clusters in dimensionality redu...7 versions - Latest release: 4 days ago - 19.3 thousand downloads total - 0 stars on GitHub - 1 maintainer
MetaCyto 1.34.0
MetaCyto: A package for meta-analysis of cytometry data7 versions - Latest release: 4 days ago - 18.5 thousand downloads total - 1 maintainer
Top 4.9% on bioconductor.org
12 versions - Latest release: 4 days ago - 5 dependent packages - 87.6 thousand downloads total - 70 stars on GitHub - 1 maintainer
CATALYST 1.36.0
Cytometry dATa anALYSis Tools12 versions - Latest release: 4 days ago - 5 dependent packages - 87.6 thousand downloads total - 70 stars on GitHub - 1 maintainer
pandaR 1.44.0
PANDA Algorithm7 versions - Latest release: 4 days ago - 1 dependent package - 27.1 thousand downloads total - 2 maintainers
Top 5.8% on bioconductor.org
7 versions - Latest release: 4 days ago - 3 dependent packages - 61.6 thousand downloads total - 1 maintainer
fabia 2.58.0
FABIA: Factor Analysis for Bicluster Acquisition7 versions - Latest release: 4 days ago - 3 dependent packages - 61.6 thousand downloads total - 1 maintainer
Top 5.2% on bioconductor.org
7 versions - Latest release: 4 days ago - 1 dependent package - 87.3 thousand downloads total - 40 stars on GitHub - 1 maintainer
GENESIS 2.42.0
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzi...7 versions - Latest release: 4 days ago - 1 dependent package - 87.3 thousand downloads total - 40 stars on GitHub - 1 maintainer
treekoR 1.20.0
Cytometry Cluster Hierarchy and Cellular-to-phenotype Associations7 versions - Latest release: 4 days ago - 11.2 thousand downloads total - 1 maintainer
CTSV 1.14.0
Identification of cell-type-specific spatially variable genes accounting for excess zeros7 versions - Latest release: 4 days ago - 8.16 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 3.6% on bioconductor.org
7 versions - Latest release: 4 days ago - 3 dependent packages - 226 thousand downloads total - 141 stars on GitHub - 1 maintainer
ballgown 2.43.0
Flexible, isoform-level differential expression analysis7 versions - Latest release: 4 days ago - 3 dependent packages - 226 thousand downloads total - 141 stars on GitHub - 1 maintainer
BiocSklearn 1.34.0
interface to python sklearn via Rstudio reticulate8 versions - Latest release: 4 days ago - 25.9 thousand downloads total - 1 maintainer
TFARM 1.34.0
Transcription Factors Association Rules Miner7 versions - Latest release: 4 days ago - 15.5 thousand downloads total - 1 maintainer
MetID 1.30.0
Network-based prioritization of putative metabolite IDs7 versions - Latest release: 5 days ago - 13.2 thousand downloads total - 1 stars on GitHub - 1 maintainer
BioCor 1.36.0
Functional Similarities7 versions - Latest release: 5 days ago - 23.5 thousand downloads total - 14 stars on GitHub - 1 maintainer
AMARETTO 1.28.0
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis an...7 versions - Latest release: 5 days ago - 18.8 thousand downloads total - 1 maintainer
RUVnormalize 1.46.0
RUV for normalization of expression array data7 versions - Latest release: 5 days ago - 25.8 thousand downloads total - 1 maintainer
ClustAll 1.8.0
ClustAll: Data driven strategy to robustly identify stratification of patients within complex dis...6 versions - Latest release: 5 days ago - 5.98 thousand downloads total - 1 maintainer
randPack 1.58.0
Randomization routines for Clinical Trials7 versions - Latest release: 6 days ago - 30.6 thousand downloads total - 1 maintainer
SETA 1.2.0
Single Cell Ecological Taxonomic Analysis2 versions - Latest release: 6 days ago - 1.54 thousand downloads total - 1 maintainer
waddR 1.26.0
Statistical tests for detecting differential distributions based on the 2-Wasserstein distance7 versions - Latest release: 6 days ago - 12 thousand downloads total - 27 stars on GitHub - 1 maintainer
HDTD 1.46.0
Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Trans...7 versions - Latest release: 6 days ago - 21.3 thousand downloads total - 1 stars on GitHub - 1 maintainer
npGSEA 1.48.0
Permutation approximation methods for gene set enrichment analysis (non-permutation GSEA)7 versions - Latest release: 6 days ago - 27.5 thousand downloads total - 1 maintainer
DeMAND 1.42.0
DeMAND7 versions - Latest release: 6 days ago - 19 thousand downloads total - 2 maintainers
beer 1.15.1
Bayesian Enrichment Estimation in R7 versions - Latest release: 6 days ago - 9.84 thousand downloads total - 11 stars on GitHub - 1 maintainer
HiLDA 1.26.0
Conducting statistical inference on comparing the mutational exposures of mutational signatures b...7 versions - Latest release: 6 days ago - 1 dependent package - 14 thousand downloads total - 3 stars on GitHub - 1 maintainer
STATegRa 1.48.0
Classes and methods for multi-omics data integration7 versions - Latest release: 6 days ago - 26 thousand downloads total - 2 maintainers
CytoGLMM 1.20.0
Conditional Differential Analysis for Flow and Mass Cytometry Experiments8 versions - Latest release: 6 days ago - 1 dependent package - 10.8 thousand downloads total - 2 stars on GitHub - 1 maintainer
DifferentialRegulation 2.10.0
Differentially regulated genes from scRNA-seq data11 versions - Latest release: 6 days ago - 9.5 thousand downloads total - 11 stars on GitHub - 1 maintainer
XAItest 1.4.0
XAItest: Enhancing Feature Discovery with eXplainable AI6 versions - Latest release: 7 days ago - 3.44 thousand downloads total - 1 stars on GitHub - 1 maintainer
LipidTrend 1.2.0
LipidTrend: Analysis and Visualization of Lipid Feature Tendencies2 versions - Latest release: 7 days ago - 2.2 thousand downloads total - 0 stars on GitHub - 1 maintainer
Harman 1.40.0
The removal of batch effects from datasets using a PCA and constrained optimisation based technique7 versions - Latest release: 7 days ago - 1 dependent package - 32.6 thousand downloads total - 1 maintainer
PPInfer 1.38.0
Inferring functionally related proteins using protein interaction networks7 versions - Latest release: 7 days ago - 1 dependent package - 22.1 thousand downloads total - 1 maintainer
profileScoreDist 1.40.0
Profile score distributions7 versions - Latest release: 7 days ago - 16.8 thousand downloads total - 1 maintainer
cpvSNP 1.44.0
Gene set analysis methods for SNP association p-values that lie in genes in given gene sets7 versions - Latest release: 7 days ago - 22.7 thousand downloads total - 1 maintainer
spillR 1.8.0
Spillover Compensation in Mass Cytometry Data7 versions - Latest release: 7 days ago - 5.78 thousand downloads total - 1 maintainer
Lheuristic 1.4.0
Detection of scatterplots with L-shaped pattern3 versions - Latest release: 7 days ago - 2.94 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 7.1% on bioconductor.org
6 versions - Latest release: 6 months ago - 30 thousand downloads total - 87 stars on GitHub - 1 maintainer
TitanCNA 1.48.0 removed
Subclonal copy number and LOH prediction from whole genome sequencing of tumours6 versions - Latest release: 6 months ago - 30 thousand downloads total - 87 stars on GitHub - 1 maintainer
epimutacions 1.16.0
Robust outlier identification for DNA methylation data8 versions - Latest release: 7 days ago - 9.58 thousand downloads total - 0 stars on GitHub - 1 maintainer
divergence 1.28.0
Divergence: Functionality for assessing omics data by divergence with respect to a baseline7 versions - Latest release: 7 days ago - 12.1 thousand downloads total - 2 maintainers
DeMixT 2.0.0
Cell type-specific deconvolution of heterogeneous tumor samples with two or three components usin...7 versions - Latest release: 7 days ago - 16.7 thousand downloads total - 1 maintainer
Summix 2.18.0
Summix2: A suite of methods to estimate, adjust, and leverage substructure in genetic summary data7 versions - Latest release: 7 days ago - 8.66 thousand downloads total - 1 maintainer
ASSET 2.30.0
An R package for subset-based association analysis of heterogeneous traits and subtypes7 versions - Latest release: 7 days ago - 1 dependent package - 33.7 thousand downloads total - 1 maintainer
SAIGEgds 2.12.0
Scalable Implementation of Generalized mixed models using GDS files in Phenome-Wide Association S...11 versions - Latest release: 8 days ago - 16.1 thousand downloads total - 7 stars on GitHub - 1 maintainer
deltaCaptureC 1.26.0
This Package Discovers Meso-scale Chromatin Remodeling from 3C Data8 versions - Latest release: 8 days ago - 11.6 thousand downloads total - 1 maintainer
PLSDAbatch 2.0.0
PLSDA-batch5 versions - Latest release: 8 days ago - 6.42 thousand downloads total - 13 stars on GitHub - 1 maintainer
survtype 1.28.0
Subtype Identification with Survival Data7 versions - Latest release: 8 days ago - 12.8 thousand downloads total - 1 maintainer
BUScorrect 1.30.0
Batch Effects Correction with Unknown Subtypes7 versions - Latest release: 8 days ago - 14.1 thousand downloads total - 1 maintainer
HiCPotts 1.2.0
HiCPotts: Hierarchical Modeling to Identify and Correct Genomic Biases in Hi-C2 versions - Latest release: 8 days ago - 1.86 thousand downloads total - 0 stars on GitHub - 1 maintainer
mbQTL 1.12.0
mbQTL: A package for SNP-Taxa mGWAS analysis7 versions - Latest release: 8 days ago - 6.37 thousand downloads total - 1 maintainer
Top 9.7% on bioconductor.org
8 versions - Latest release: 8 days ago - 1 dependent package - 63.9 thousand downloads total - 222 stars on GitHub - 1 maintainer
muscat 1.26.0
Multi-sample multi-group scRNA-seq data analysis tools8 versions - Latest release: 8 days ago - 1 dependent package - 63.9 thousand downloads total - 222 stars on GitHub - 1 maintainer
tpSVG 1.8.0
Thin plate models to detect spatially variable genes6 versions - Latest release: 9 days ago - 5.74 thousand downloads total - 2 stars on GitHub - 1 maintainer
srnadiff 1.32.0
Finding differentially expressed unannotated genomic regions from RNA-seq data8 versions - Latest release: 9 days ago - 15.1 thousand downloads total - 1 maintainer
CyTOFpower 1.17.0
Power analysis for CyTOF experiments8 versions - Latest release: 9 days ago - 7.03 thousand downloads total - 1 maintainer
lefser 1.22.0
R implementation of the LEfSE method for microbiome biomarker discovery9 versions - Latest release: 9 days ago - 1 dependent package - 96.8 thousand downloads total - 42 stars on GitHub - 1 maintainer
fgga 1.20.0
Hierarchical ensemble method based on factor graph8 versions - Latest release: 9 days ago - 10.2 thousand downloads total - 3 stars on GitHub - 1 maintainer
consICA 2.10.0
consensus Independent Component Analysis7 versions - Latest release: 10 days ago - 10 thousand downloads total - 0 stars on GitHub - 1 maintainer
jazzPanda 1.4.0
Finding spatially relevant marker genes in image based spatial transcriptomics data5 versions - Latest release: 11 days ago - 4.01 thousand downloads total - 0 stars on GitHub - 1 maintainer
VaSP 1.24.0
Quantification and Visualization of Variations of Splicing in Population7 versions - Latest release: 11 days ago - 10.9 thousand downloads total - 3 stars on GitHub - 1 maintainer
QRscore 1.4.0
Quantile Rank Score3 versions - Latest release: 12 days ago - 3.35 thousand downloads total - 0 stars on GitHub - 1 maintainer
swfdr 1.38.0
Estimation of the science-wise false discovery rate and the false discovery rate conditional on c...7 versions - Latest release: 12 days ago - 18.1 thousand downloads total - 3 stars on GitHub - 2 maintainers
decoupleR 2.17.0
decoupleR: Ensemble of computational methods to infer biological activities from omics data8 versions - Latest release: 13 days ago - 3 dependent packages - 92.5 thousand downloads total - 285 stars on GitHub - 1 maintainer
YAPSA 1.38.0
Yet Another Package for Signature Analysis8 versions - Latest release: 14 days ago - 30.3 thousand downloads total - 1 maintainer
FeatSeekR 1.12.0
FeatSeekR an R package for unsupervised feature selection7 versions - Latest release: 14 days ago - 6.85 thousand downloads total - 1 stars on GitHub - 1 maintainer
glmSparseNet 1.30.0
Network Centrality Metrics for Elastic-Net Regularized Models8 versions - Latest release: 15 days ago - 109 thousand downloads total - 3 stars on GitHub - 1 maintainer
CatsCradle 1.6.0
This package provides methods for analysing spatial transcriptomics data and for discovering gene...6 versions - Latest release: 15 days ago - 4.95 thousand downloads total - 3 stars on GitHub - 1 maintainer
MultiBaC 1.22.0
Multiomic Batch effect Correction7 versions - Latest release: 16 days ago - 13.5 thousand downloads total - 1 maintainer
queeems 1.0.0
Quantify the Extent of Evolutionary Evidence in Molecular Sequences1 version - Latest release: 16 days ago - 18 downloads total - 1 maintainer
tidyexposomics 1.0.0
Integrated Exposure-Omics Analysis Powered by Tidy Principles1 version - Latest release: 16 days ago - 545 downloads total - 1 maintainer
SpliceImpactR 1.0.0
An R package to identify functional impacts due to alternative RNA processing events1 version - Latest release: 16 days ago - 117 downloads total - 1 maintainer
MutSeqR 1.0.0
Analysis of Error-Corrected Sequencing Data for Mutation Detection1 version - Latest release: 16 days ago - 615 downloads total - 1 maintainer
RFGeneRank 1.0.0
RFGeneRank: Cross-validated Stable Predictive Gene Ranking for Transcriptomics1 version - Latest release: 16 days ago - 32 downloads total - 1 maintainer
MeLSI 1.0.0
Metric Learning for Statistical Inference in Microbiome Analysis1 version - Latest release: 16 days ago - 95 downloads total - 1 maintainer
LACHESIS 1.0.0
Functions used to analyze early tumor evolution from whole genome sequencing data1 version - Latest release: 16 days ago - 863 downloads total - 1 maintainer
asuri 1.0.0
Analysis of SUrvival and RIsk prediction in patients based on gene signatures1 version - Latest release: 16 days ago - 798 downloads total - 1 maintainer
Related Keywords
Software
191
GeneExpression
63
DifferentialExpression
48
Sequencing
47
ImmunoOncology
36
RNASeq
34
Visualization
30
Clustering
30
Regression
26
MultipleComparison
25
Genetics
24
Classification
24
SingleCell
22
Preprocessing
19
Microarray
19
Transcriptomics
19
Bayesian
18
Network
17
BatchEffect
15
BiologicalQuestion
15
PrincipalComponent
14
Transcription
14
GraphAndNetwork
14
DimensionReduction
13
Normalization
13
GenomeWideAssociation
11
Pathways
11
FlowCytometry
11
GeneSetEnrichment
10
DNAMethylation
10
Proteomics
9
r
9
FeatureExtraction
9
DataImport
9
DifferentialMethylation
8
Spatial
8
MassSpectrometry
8
AlternativeSplicing
8
SomaticMutation
8
Survival
8
GenomicVariation
8
CellBiology
7
CellBasedAssays
7
Coverage
7
bioconductor
7
WorkflowStep
7
DifferentialSplicing
7
WholeGenome
7
SNP
7
QualityControl
7
TimeCourse
6
bioinformatics
6
NetworkEnrichment
6
ResearchField
6
GeneTarget
6
GeneRegulation
6
Epigenetics
6
Metabolomics
6
MethylationArray
5
Alignment
5
BiomedicalInformatics
5
bioconductor-package
5
Microbiome
5
Technology
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SystemsBiology
5
ExperimentalDesign
4
KEGG
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HiddenMarkovModel
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Infrastructure
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r-package
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DNASeq
4
FunctionalGenomics
3
GenomeAnnotation
3
rstats
3
MethylSeq
3
Annotation
3
GenePrediction
3
CopyNumberVariation
3
NetworkInference
3
MathematicalBiology
3
missing-data
2
ExomeSeq
2
Lipidomics
2
statistics
2
machine-learning
2
DataRepresentation
2
mRNAMicroarray
2
inheritance
2
MicroRNAArray
2
nucleosomes
2
ExonArray
2
simulation
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ChIPSeq
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snp
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SequenceMatching
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GO
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methylation
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dna-methylation
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