Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "Technology" keyword
MDTS 1.22.0
Detection of de novo deletion in targeted sequencing trios3 versions - Latest release: 6 months ago - 7.04 thousand downloads total - 1 maintainer
HiCBricks 1.20.0
Framework for Storing and Accessing Hi-C Data Through HDF Files3 versions - Latest release: 6 months ago - 1 dependent package - 8.09 thousand downloads total - 1 maintainer
optimalFlow 1.14.0
optimalFlow3 versions - Latest release: 6 months ago - 4.08 thousand downloads total - 1 maintainer
seq.hotSPOT 1.2.0
Targeted sequencing panel design based on mutation hotspots3 versions - Latest release: 6 months ago - 1.08 thousand downloads total - 0 stars on GitHub - 1 maintainer
openPrimeRui 1.24.0
Shiny Application for Multiplex PCR Primer Design and Analysis3 versions - Latest release: 6 months ago - 8.58 thousand downloads total - 1 maintainer
openPrimeR 1.24.0
Multiplex PCR Primer Design and Analysis3 versions - Latest release: 6 months ago - 1 dependent package - 13.1 thousand downloads total - 1 maintainer
IFAA 1.4.0
Robust Inference for Absolute Abundance in Microbiome Analysis3 versions - Latest release: 6 months ago - 1.54 thousand downloads total - 1 maintainer
Top 9.3% on bioconductor.org
3 versions - Latest release: 6 months ago - 26 thousand downloads total - 1 maintainer
spkTools 1.58.0
Methods for Spike-in Arrays3 versions - Latest release: 6 months ago - 26 thousand downloads total - 1 maintainer
iGC 1.32.0
An integrated analysis package of Gene expression and Copy number alteration3 versions - Latest release: 6 months ago - 11.3 thousand downloads total - 1 stars on GitHub - 1 maintainer
nondetects 2.32.0
Non-detects in qPCR data3 versions - Latest release: 6 months ago - 19.4 thousand downloads total - 1 maintainer
LymphoSeq 1.30.0
Analyze high-throughput sequencing of T and B cell receptors3 versions - Latest release: 6 months ago - 12.2 thousand downloads total - 1 maintainer
rSWeeP 1.14.0
Functions to creation of low dimensional comparative matrices of Amino Acid Sequence occurrences3 versions - Latest release: 6 months ago - 4.28 thousand downloads total - 1 maintainer
ORFhunteR 1.10.0
Predict open reading frames in nucleotide sequences3 versions - Latest release: 6 months ago - 3.05 thousand downloads total - 1 stars on GitHub - 1 maintainer
MetID 1.20.0
Network-based prioritization of putative metabolite IDs3 versions - Latest release: 6 months ago - 5.66 thousand downloads total - 1 stars on GitHub - 1 maintainer
CoverageView 1.40.0
Coverage visualization package for R3 versions - Latest release: 6 months ago - 18.7 thousand downloads total - 1 maintainer
CellaRepertorium 1.12.0
Data structures, clustering and testing for single cell immune receptor repertoires (scRNAseq Rep...3 versions - Latest release: 6 months ago - 3.94 thousand downloads total - 13 stars on GitHub - 1 maintainer
wavClusteR 2.36.0
Sensitive and highly resolved identification of RNA-protein interaction sites in PAR-CLIP data3 versions - Latest release: 6 months ago - 16.8 thousand downloads total - 1 maintainer
CIMICE 1.10.0
CIMICE-R: (Markov) Chain Method to Inferr Cancer Evolution3 versions - Latest release: 6 months ago - 3.06 thousand downloads total - 0 stars on GitHub - 1 maintainer
metapone 1.8.0
Conducts pathway test of metabolomics data using a weighted permutation test3 versions - Latest release: 6 months ago - 2.69 thousand downloads total - 1 maintainer
DMRScan 1.24.0
Detection of Differentially Methylated Regions3 versions - Latest release: 6 months ago - 8.77 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 5.5% on bioconductor.org
3 versions - Latest release: 14 days ago - 51.4 thousand downloads total - 1 stars on GitHub - 2 maintainers
dupRadar 1.34.0
Assessment of duplication rates in RNA-Seq datasets3 versions - Latest release: 14 days ago - 51.4 thousand downloads total - 1 stars on GitHub - 2 maintainers
Top 5.1% on bioconductor.org
3 versions - Latest release: 15 days ago - 1 dependent package - 41.6 thousand downloads total - 1 maintainer
ACME 2.60.0
Algorithms for Calculating Microarray Enrichment (ACME)3 versions - Latest release: 15 days ago - 1 dependent package - 41.6 thousand downloads total - 1 maintainer
TAPseq 1.16.0
Targeted scRNA-seq primer design for TAP-seq4 versions - Latest release: 18 days ago - 4.8 thousand downloads total - 4 stars on GitHub - 1 maintainer
consICA 2.2.0
consensus Independent Component Analysis3 versions - Latest release: 22 days ago - 2.29 thousand downloads total - 0 stars on GitHub - 1 maintainer
compSPOT 1.0.0
compSPOT: Tool for identifying and comparing significantly mutated genomic hotspots1 version - Latest release: 7 months ago - 563 downloads total - 0 stars on GitHub - 1 maintainer
amplican 1.24.0
Automated analysis of CRISPR experiments2 versions - Latest release: 6 months ago - 11.8 thousand downloads total - 9 stars on GitHub - 1 maintainer
pram 1.18.0
Pooling RNA-seq datasets for assembling transcript models2 versions - Latest release: 6 months ago - 5.11 thousand downloads total - 1 stars on GitHub - 1 maintainer
scruff 1.20.0
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)2 versions - Latest release: 6 months ago - 7.41 thousand downloads total - 8 stars on GitHub - 1 maintainer
Related Keywords
Software
28
Sequencing
17
RNASeq
8
StatisticalMethod
6
ImmunoOncology
6
SingleCell
5
ResearchField
4
WorkflowStep
4
Alignment
4
Classification
3
AssayDomain
3
Microarray
3
BiologicalQuestion
3
MultipleComparison
3
WholeGenome
3
Transcriptomics
3
TargetedResequencing
3
Visualization
2
FeatureExtraction
2
qPCR
2
Preprocessing
2
QualityControl
2
CRISPR
2
Genetics
2
GeneExpression
2
DataImport
2
Coverage
2
Infrastructure
2
DNASeq
2
MassSpectrometry
1
Metabolomics
1
Pathways
1
Normalization
1
PooledScreens
1
Survival
1
GenePrediction
1
GenomeAnnotation
1
bioconductor-package
1
genome-annotation
1
r-package
1
rna-seq
1
transcript-model
1
bioinformatics
1
scrna-seq
1
single-cell
1
umi
1
GenomicVariation
1
DifferentialExpression
1
MultipleSequenceAlignment
1
SupportVectorMachine
1
CopyNumberVariation
1
Biological Question
1
Regression
1
Microbiome
1
KEGG
1
Network
1
ChIPSeq
1
FlowCytometry
1
Clustering
1
HiC
1
Bayesian
1
RIPSeq
1
GraphAndNetwork
1
NetworkInference
1
Phylogenetics
1