Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "ThirdPartyClient" keyword
gemma.R 3.0.3
A wrapper for Gemma's Restful API to access curated gene expression data and differential express...6 versions - Latest release: 7 days ago - 2.01 thousand downloads total - 9 stars on GitHub - 1 maintainer
OmnipathR 3.10.1
OmniPath web service client and more3 versions - Latest release: 6 months ago - 3 dependent packages - 23.4 thousand downloads total - 1 maintainer
Top 8.1% on bioconductor.org
3 versions - Latest release: 6 months ago - 30.1 thousand downloads total - 1 maintainer
maigesPack 1.66.0
Functions to handle cDNA microarray data, including several methods of data analysis3 versions - Latest release: 6 months ago - 30.1 thousand downloads total - 1 maintainer
Top 8.4% on bioconductor.org
2 versions - Latest release: 6 months ago - 31.2 thousand downloads total - 1 maintainer
gaggle 1.70.0 removed
Broadcast data between R and Gaggle2 versions - Latest release: 6 months ago - 31.2 thousand downloads total - 1 maintainer
adductomicsR 1.18.0
Processing of adductomic mass spectral datasets3 versions - Latest release: 6 months ago - 6.85 thousand downloads total - 1 stars on GitHub - 1 maintainer
RCyjs 2.24.0
Display and manipulate graphs in cytoscape.js3 versions - Latest release: 6 months ago - 13.7 thousand downloads total - 1 maintainer
BrowserViz 2.24.0
BrowserViz: interactive R/browser graphics using websockets and JSON3 versions - Latest release: 6 months ago - 2 dependent packages - 19.2 thousand downloads total - 1 stars on GitHub - 1 maintainer
sevenbridges 1.32.0
Seven Bridges Platform API Client and Common Workflow Language Tool Builder in R3 versions - Latest release: 6 months ago - 14.3 thousand downloads total - 33 stars on GitHub - 1 maintainer
rfaRm 1.14.2
An R interface to the Rfam database5 versions - Latest release: 3 months ago - 4.46 thousand downloads total - 2 maintainers
RGraph2js 1.30.0
Convert a Graph into a D3js Script3 versions - Latest release: 6 months ago - 10.2 thousand downloads total - 1 maintainer
CoSIA 1.2.0
An Investigation Across Different Species and Tissues3 versions - Latest release: 6 months ago - 1.05 thousand downloads total - 1 maintainer
KEGGlincs 1.28.0
Visualize all edges within a KEGG pathway and overlay LINCS data3 versions - Latest release: 6 months ago - 10.9 thousand downloads total - 2 maintainers
ImmuneSpaceR 1.30.0
A Thin Wrapper around the ImmuneSpace Data and Tools Portal3 versions - Latest release: 6 months ago - 12.2 thousand downloads total - 25 stars on GitHub - 1 maintainer
DeepBlueR 1.27.0 removed
DeepBlueR2 versions - Latest release: 6 months ago - 12.8 thousand downloads total - 3 maintainers
Top 1.2% on bioconductor.org
3 versions - Latest release: 20 days ago - 35 dependent packages - 2.41 million downloads total - 1 maintainer
KEGGREST 1.44.0
Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)3 versions - Latest release: 20 days ago - 35 dependent packages - 2.41 million downloads total - 1 maintainer
rWikiPathways 1.24.0
rWikiPathways - R client library for the WikiPathways API3 versions - Latest release: 9 days ago - 5 dependent packages - 56.6 thousand downloads total - 12 stars on GitHub - 1 maintainer
cBioPortalData 2.16.0
Exposes and Makes Available Data from the cBioPortal Web Resources4 versions - Latest release: 10 days ago - 4 dependent packages - 20.2 thousand downloads total - 29 stars on GitHub - 1 maintainer
Top 2.7% on bioconductor.org
2 versions - Latest release: 6 months ago - 11 dependent packages - 229 thousand downloads total - 5 stars on GitHub - 1 maintainer
graphite 1.48.0
GRAPH Interaction from pathway Topological Environment2 versions - Latest release: 6 months ago - 11 dependent packages - 229 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 6.2% on bioconductor.org
2 versions - Latest release: 6 months ago - 61 dependent packages - 427 thousand downloads total - 6 stars on GitHub - 1 maintainer
ExperimentHub 2.10.0
Client to access ExperimentHub resources2 versions - Latest release: 6 months ago - 61 dependent packages - 427 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 4.3% on bioconductor.org
3 versions - Latest release: 27 days ago - 97 dependent packages - 966 thousand downloads total - 13 stars on GitHub - 1 maintainer
AnnotationHub 3.10.1
Client to access AnnotationHub resources3 versions - Latest release: 27 days ago - 97 dependent packages - 966 thousand downloads total - 13 stars on GitHub - 1 maintainer
Top 3.2% on bioconductor.org
3 versions - Latest release: 13 days ago - 1 dependent package - 128 thousand downloads total - 1 maintainer
lpsymphony 1.32.0
Symphony integer linear programming solver in R3 versions - Latest release: 13 days ago - 1 dependent package - 128 thousand downloads total - 1 maintainer
Top 5.5% on bioconductor.org
3 versions - Latest release: 14 days ago - 3 dependent packages - 51.5 thousand downloads total - 4 stars on GitHub - 1 maintainer
rpx 2.12.0
R Interface to the ProteomeXchange Repository3 versions - Latest release: 14 days ago - 3 dependent packages - 51.5 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 4.2% on bioconductor.org
3 versions - Latest release: 18 days ago - 15 dependent packages - 75.9 thousand downloads total - 47 stars on GitHub - 1 maintainer
RCy3 2.24.0
Functions to Access and Control Cytoscape3 versions - Latest release: 18 days ago - 15 dependent packages - 75.9 thousand downloads total - 47 stars on GitHub - 1 maintainer
BiocDockerManager 1.11.0 removed
Access Bioconductor docker images1 version - Latest release: 7 months ago - 3.43 thousand downloads total - 1 stars on GitHub - 1 maintainer
cbpManager 1.12.0
Generate, manage, and edit data and metadata files suitable for the import in cBioPortal for Canc...3 versions - Latest release: 17 days ago - 3.21 thousand downloads total - 6 stars on GitHub - 1 maintainer
ginmappeR 1.0.0
Gene Identifier Mapper1 version - Latest release: 22 days ago - 155 downloads total - 1 maintainer
cellxgenedp 1.8.0
Discover and Access Single Cell Data Sets in the CELLxGENE Data Portal4 versions - Latest release: 22 days ago - 4.41 thousand downloads total - 7 stars on GitHub - 1 maintainer
igvR 1.22.0
igvR: integrative genomics viewer2 versions - Latest release: 6 months ago - 11.2 thousand downloads total - 40 stars on GitHub - 1 maintainer
brendaDb 1.16.0
The BRENDA Enzyme Database2 versions - Latest release: 7 months ago - 5.12 thousand downloads total - 2 stars on GitHub - 1 maintainer
GA4GHclient 1.26.0
A Bioconductor package for accessing GA4GH API data servers2 versions - Latest release: 6 months ago - 1 dependent package - 9.94 thousand downloads total - 1 stars on GitHub - 1 maintainer
HubPub 1.10.1
Utilities to create and use Bioconductor Hubs3 versions - Latest release: 3 months ago - 4 dependent packages - 10.8 thousand downloads total - 3 stars on GitHub - 1 maintainer
ncRNAtools 1.12.0
An R toolkit for non-coding RNA2 versions - Latest release: 6 months ago - 3.27 thousand downloads total - 1 stars on GitHub - 1 maintainer
ExperimentHubData 1.28.0
Add resources to ExperimentHub2 versions - Latest release: 6 months ago - 3 dependent packages - 26.5 thousand downloads total - 1 maintainer
Related Keywords
Software
33
DataImport
18
Visualization
10
GraphAndNetwork
9
Infrastructure
7
Annotation
7
GUI
6
DataRepresentation
6
Network
6
KEGG
5
Preprocessing
4
bioinformatics
4
Pathways
4
GeneExpression
3
SingleCell
3
ImmunoOncology
3
bioconductor
3
Metabolomics
3
core-package
2
r
2
MassSpectrometry
2
FunctionalGenomics
2
GeneRegulation
2
rpackage
2
DifferentialExpression
2
pathways
2
Microarray
2
mass-spectrometry
1
data
1
Proteomics
1
pathway-analysis
1
mirror
1
Reactome
1
bioconductor-package
1
data-access
1
GenomeAnnotation
1
proteomexchange
1
proteomics
1
cancer-genomics
1
cbioportal
1
clinical-data
1
filegenerator
1
mutation-data
1
patient-data
1
Genetics
1
GenomeBrowsers
1
brenda
1
database
1
enzyme
1
hacktoberfest
1
StructuralPrediction
1
BatchEffect
1
Bayesian
1
ExperimentalDesign
1
Normalization
1
gemma
1
genomics
1
transcriptomics
1
GeneSignaling
1
SystemsBiology
1
Transcriptomics
1
Classification
1
Clustering
1
TwoChannel
1
api-client
1
cloud
1
common-workflow-language
1
sevenbridges
1
MultipleSequenceAlignment
1
BiologicalQuestion
1
MultipleComparison
1
CellBiology
1
NetworkInference
1
hipc
1
immport
1
immunespace
1
immunology
1
labkey
1
CpGIsland
1
DNAMethylation
1
Epigenetics
1