Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "TimeCourse" keyword
pengls 1.8.0
Fit Penalised Generalised Least Squares models3 versions - Latest release: 6 months ago - 2.06 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 9.4% on bioconductor.org
3 versions - Latest release: 6 months ago - 26.5 thousand downloads total - 1 maintainer
RTCA 1.54.0
Open-source toolkit to analyse data from xCELLigence System (RTCA)3 versions - Latest release: 6 months ago - 26.5 thousand downloads total - 1 maintainer
plethy 1.40.0 removed
R framework for exploration and analysis of respirometry data2 versions - Latest release: 6 months ago - 16.1 thousand downloads total - 1 maintainer
tigre 1.56.0
Transcription factor Inference through Gaussian process Reconstruction of Expression3 versions - Latest release: 6 months ago - 26.5 thousand downloads total - 1 stars on GitHub - 1 maintainer
mirTarRnaSeq 1.10.0
mirTarRnaSeq3 versions - Latest release: 6 months ago - 3.38 thousand downloads total - 1 maintainer
deltaGseg 1.42.0
deltaGseg3 versions - Latest release: 6 months ago - 19.2 thousand downloads total - 1 maintainer
CNORdt 1.44.0
Add-on to CellNOptR: Discretized time treatments3 versions - Latest release: 6 months ago - 21.7 thousand downloads total - 1 maintainer
CoGAPS 3.22.0
Coordinated Gene Activity in Pattern Sets3 versions - Latest release: 6 months ago - 3 dependent packages - 29.2 thousand downloads total - 4 maintainers
edge 2.34.0
Extraction of Differential Gene Expression3 versions - Latest release: 6 months ago - 22.2 thousand downloads total - 20 stars on GitHub - 2 maintainers
ASpli 2.12.0
Analysis of Alternative Splicing Using RNA-Seq3 versions - Latest release: 6 months ago - 1 dependent package - 17 thousand downloads total - 1 maintainer
CellTrails 1.20.0
Reconstruction, visualization and analysis of branching trajectories3 versions - Latest release: 6 months ago - 6.81 thousand downloads total - 1 maintainer
AMARETTO 1.18.0
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis an...3 versions - Latest release: 6 months ago - 7.55 thousand downloads total - 1 maintainer
Top 8.9% on bioconductor.org
3 versions - Latest release: 6 months ago - 6 dependent packages - 37.4 thousand downloads total - 1 maintainer
CellNOptR 1.48.0
Training of boolean logic models of signalling networks using prior knowledge networks and pertur...3 versions - Latest release: 6 months ago - 6 dependent packages - 37.4 thousand downloads total - 1 maintainer
LiquidAssociation 1.56.0
LiquidAssociation3 versions - Latest release: 6 months ago - 1 dependent package - 27.1 thousand downloads total - 1 maintainer
GRmetrics 1.28.0
Calculate growth-rate inhibition (GR) metrics3 versions - Latest release: 6 months ago - 15.7 thousand downloads total - 1 stars on GitHub - 2 maintainers
TCseq 1.26.0
Time course sequencing data analysis3 versions - Latest release: 6 months ago - 16.3 thousand downloads total - 1 maintainer
GRENITS 1.54.0
Gene Regulatory Network Inference Using Time Series3 versions - Latest release: 6 months ago - 23.6 thousand downloads total - 1 maintainer
RNAdecay 1.22.2
Maximum Likelihood Decay Modeling of RNA Degradation Data5 versions - Latest release: 3 months ago - 5.73 thousand downloads total - 1 maintainer
Rnits 1.36.0
R Normalization and Inference of Time Series data2 versions - Latest release: 6 months ago - 14 thousand downloads total - 1 maintainer
CNORode 1.44.0
ODE add-on to CellNOptR3 versions - Latest release: 6 months ago - 1 dependent package - 26.9 thousand downloads total - 1 maintainer
acde 1.32.0
Artificial Components Detection of Differentially Expressed Genes3 versions - Latest release: 6 months ago - 14.7 thousand downloads total - 1 maintainer
INSPEcT 1.32.1
Modeling RNA synthesis, processing and degradation with RNA-seq data4 versions - Latest release: 4 months ago - 14.3 thousand downloads total - 2 maintainers
metaseqR2 1.14.0
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statisti...3 versions - Latest release: 6 months ago - 5.12 thousand downloads total - 1 maintainer
moanin 1.10.0
An R Package for Time Course RNASeq Data Analysis3 versions - Latest release: 6 months ago - 4.71 thousand downloads total - 1 maintainer
dearseq 1.14.0
Differential Expression Analysis for RNA-seq data through a robust variance component test3 versions - Latest release: 6 months ago - 2 dependent packages - 8.25 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 9.6% on bioconductor.org
3 versions - Latest release: 6 months ago - 27.5 thousand downloads total - 1 maintainer
cycle 1.56.0
Significance of periodic expression pattern in time-series data3 versions - Latest release: 6 months ago - 27.5 thousand downloads total - 1 maintainer
flowTime 1.26.0
Annotation and analysis of biological dynamical systems using flow cytometry3 versions - Latest release: 6 months ago - 9.36 thousand downloads total - 1 maintainer
splineTimeR 1.30.0
Time-course differential gene expression data analysis using spline regression models followed by...3 versions - Latest release: 6 months ago - 12.4 thousand downloads total - 2 maintainers
rain 1.36.0
Rhythmicity Analysis Incorporating Non-parametric Methods3 versions - Latest release: 6 months ago - 19.2 thousand downloads total - 1 maintainer
CONFESS 1.30.0
Cell OrderiNg by FluorEScence Signal3 versions - Latest release: 6 months ago - 10.9 thousand downloads total - 1 maintainer
EBSeqHMM 1.35.0
Bayesian analysis for identifying gene or isoform expression changes in ordered RNA-seq experiments3 versions - Latest release: 6 months ago - 17.4 thousand downloads total - 1 maintainer
TMixClust 1.24.0
Time Series Clustering of Gene Expression with Gaussian Mixed-Effects Models and Smoothing Splines3 versions - Latest release: 6 months ago - 9.74 thousand downloads total - 1 maintainer
DiscoRhythm 1.18.0
Interactive Workflow for Discovering Rhythmicity in Biological Data3 versions - Latest release: 6 months ago - 6.91 thousand downloads total - 11 stars on GitHub - 1 maintainer
Top 0.3% on bioconductor.org
4 versions - Latest release: 19 days ago - 322 dependent packages - 5.09 million downloads total - 1 maintainer
limma 3.60.0
Linear Models for Microarray Data4 versions - Latest release: 19 days ago - 322 dependent packages - 5.09 million downloads total - 1 maintainer
Top 0.6% on bioconductor.org
14 versions - Latest release: 19 days ago - 181 dependent packages - 3.02 million downloads total - 4 maintainers
edgeR 4.2.0
Empirical Analysis of Digital Gene Expression Data in R14 versions - Latest release: 19 days ago - 181 dependent packages - 3.02 million downloads total - 4 maintainers
netOmics 1.10.0
Multi-Omics (time-course) network-based integration and interpretation3 versions - Latest release: 8 days ago - 2.23 thousand downloads total - 5 stars on GitHub - 1 maintainer
msqrob2 1.12.0
Robust statistical inference for quantitative LC-MS proteomics3 versions - Latest release: 15 days ago - 5.2 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 3.3% on bioconductor.org
4 versions - Latest release: 12 days ago - 2 dependent packages - 135 thousand downloads total - 1 maintainer
DMRcate 3.0.0
Methylation array and sequencing spatial analysis methods4 versions - Latest release: 12 days ago - 2 dependent packages - 135 thousand downloads total - 1 maintainer
Top 5.4% on bioconductor.org
3 versions - Latest release: 13 days ago - 48.9 thousand downloads total - 1 maintainer
limmaGUI 1.80.0
GUI for limma Package With Two Color Microarrays3 versions - Latest release: 13 days ago - 48.9 thousand downloads total - 1 maintainer
Top 4.8% on bioconductor.org
3 versions - Latest release: 13 days ago - 66 thousand downloads total - 1 maintainer
affylmGUI 1.78.0
GUI for limma Package with Affymetrix Microarrays3 versions - Latest release: 13 days ago - 66 thousand downloads total - 1 maintainer
timeOmics 1.16.0
Time-Course Multi-Omics data integration3 versions - Latest release: 13 days ago - 1 dependent package - 5.04 thousand downloads total - 21 stars on GitHub - 1 maintainer
Top 3.4% on bioconductor.org
3 versions - Latest release: 13 days ago - 5 dependent packages - 122 thousand downloads total - 1 maintainer
Mfuzz 2.64.0
Soft clustering of time series gene expression data3 versions - Latest release: 13 days ago - 5 dependent packages - 122 thousand downloads total - 1 maintainer
Top 4.7% on bioconductor.org
4 versions - Latest release: 13 days ago - 8 dependent packages - 64.1 thousand downloads total - 1 maintainer
MSstats 4.12.0
Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experi...4 versions - Latest release: 13 days ago - 8 dependent packages - 64.1 thousand downloads total - 1 maintainer
Top 4.2% on bioconductor.org
3 versions - Latest release: 13 days ago - 73.7 thousand downloads total - 1 maintainer
maSigPro 1.76.0
Significant Gene Expression Profile Differences in Time Course Gene Expression Data3 versions - Latest release: 13 days ago - 73.7 thousand downloads total - 1 maintainer
Top 5.1% on bioconductor.org
3 versions - Latest release: 13 days ago - 46 thousand downloads total - 1 maintainer
timecourse 1.76.0
Statistical Analysis for Developmental Microarray Time Course Data3 versions - Latest release: 13 days ago - 46 thousand downloads total - 1 maintainer
Top 6.8% on bioconductor.org
3 versions - Latest release: 18 days ago - 27.2 thousand downloads total - 221 stars on GitHub - 1 maintainer
tradeSeq 1.18.0
trajectory-based differential expression analysis for sequencing data3 versions - Latest release: 18 days ago - 27.2 thousand downloads total - 221 stars on GitHub - 1 maintainer
MultiRNAflow 1.2.0
An R package for integrated analysis of temporal RNA-seq data with multiple biological conditions2 versions - Latest release: 19 days ago - 720 downloads total - 0 stars on GitHub - 1 maintainer
MOSim 1.16.0
Multi-Omics Simulation (MOSim)2 versions - Latest release: 7 months ago - 4.65 thousand downloads total - 6 stars on GitHub - 1 maintainer
RolDE 1.6.0
RolDE: Robust longitudinal Differential Expression2 versions - Latest release: 6 months ago - 1.65 thousand downloads total - 4 stars on GitHub - 1 maintainer
roastgsa 1.0.0
Rotation based gene set analysis1 version - Latest release: 7 months ago - 569 downloads total - 0 stars on GitHub - 1 maintainer
EventPointer 3.10.0
An effective identification of alternative splicing events using junction arrays and RNA-Seq data2 versions - Latest release: 6 months ago - 10.9 thousand downloads total - 4 stars on GitHub - 1 maintainer
GOexpress 1.36.0
Visualise microarray and RNAseq data using gene ontology annotations2 versions - Latest release: 6 months ago - 1 dependent package - 23.7 thousand downloads total - 9 stars on GitHub - 1 maintainer
Trendy 1.24.1
Breakpoint analysis of time-course expression data3 versions - Latest release: 6 months ago - 8.18 thousand downloads total - 6 stars on GitHub - 1 maintainer
TimiRGeN 1.11.0
Time sensitive microRNA-mRNA integration, analysis and network generation tool2 versions - Latest release: 7 months ago - 1 dependent package - 3.71 thousand downloads total - 2 stars on GitHub - 1 maintainer
ctsGE 1.28.0
Clustering of Time Series Gene Expression data2 versions - Latest release: 6 months ago - 10.8 thousand downloads total - 1 stars on GitHub - 1 maintainer
OmicsLonDA 1.18.0
Omics Longitudinal Differential Analysis2 versions - Latest release: 6 months ago - 5.95 thousand downloads total - 5 stars on GitHub - 1 maintainer
LineagePulse 1.21.0
Differential expression analysis and model fitting for single-cell RNA-seq data2 versions - Latest release: 6 months ago - 7.08 thousand downloads total - 11 stars on GitHub - 1 maintainer
MethCP 1.13.0 removed
Differential methylation anlsysis for bisulfite sequencing data1 version - Latest release: 7 months ago - 2.97 thousand downloads total - 4 stars on GitHub - 1 maintainer
Related Keywords
Software
58
DifferentialExpression
29
GeneExpression
29
ImmunoOncology
25
RNASeq
21
Sequencing
21
Regression
20
Clustering
19
Microarray
18
MultipleComparison
16
Transcription
15
Bayesian
12
Normalization
12
Visualization
12
CellBiology
12
Proteomics
12
QualityControl
11
DataImport
11
GeneSetEnrichment
11
Preprocessing
10
Transcriptomics
9
SystemsBiology
8
Genetics
7
AlternativeSplicing
7
DifferentialSplicing
7
Pathways
7
BatchEffect
7
mRNAMicroarray
7
CellBasedAssays
7
Network
6
Epigenetics
6
StatisticalMethod
5
TwoChannel
5
ProprietaryPlatforms
5
OneChannel
5
GeneRegulation
5
BiomedicalInformatics
5
DifferentialMethylation
4
NetworkInference
4
SingleCell
4
FunctionalGenomics
4
Metabolomics
4
GraphAndNetwork
3
ChIPSeq
3
WorkflowStep
3
PrincipalComponent
3
DataRepresentation
3
GUI
3
DimensionReduction
3
MicroRNAArray
3
ExonArray
3
Coverage
3
bioconductor
2
Classification
2
miRNA
2
Survival
2
WholeGenome
2
MassSpectrometry
2
ExperimentalDesign
2
GenomeAnnotation
2
Cheminformatics
2
MethylationArray
2
DNAMethylation
2
Microbiome
1
cluster
1
Metagenomics
1
GenePrediction
1
FeatureExtraction
1
Alignment
1
integration
1
multi-omics
1
time-series
1
Differential Expression
1
RNA-Seq
1
Annotation
1
Lipidomics
1
GO
1
geneset-enrichment
1
bioconductor-package
1
geneontology
1
bioconductor-stats
1
SmallRNA
1
CopyNumberVariation
1
biocViews
1
Infastructure
1
Infrastructure
1
Bioinformatics
1
Spatial
1
ATACSeq
1
ReportWriting
1
DNASeq
1
KEGG
1
FlowCytometry
1
NetworkEnrichment
1
HiddenMarkovModel
1
data-visualization
1
oscillations
1
package
1
r
1
rhythm-detection
1