bioconductor.org "TimeCourse" keyword
Top 0.3% on bioconductor.org
19 versions - Latest release: 8 days ago - 322 dependent packages - 7.17 million downloads total - 1 maintainer
limma 3.68.2
Linear Models for Microarray and Omics Data19 versions - Latest release: 8 days ago - 322 dependent packages - 7.17 million downloads total - 1 maintainer
CONFESS 1.40.0
Cell OrderiNg by FluorEScence Signal7 versions - Latest release: about 11 hours ago - 20.3 thousand downloads total - 1 maintainer
Top 0.6% on bioconductor.org
27 versions - Latest release: 16 days ago - 181 dependent packages - 4.41 million downloads total - 4 maintainers
edgeR 4.10.0
Empirical Analysis of Digital Gene Expression Data in R27 versions - Latest release: 16 days ago - 181 dependent packages - 4.41 million downloads total - 4 maintainers
Top 4.7% on bioconductor.org
13 versions - Latest release: 2 days ago - 8 dependent packages - 99.7 thousand downloads total - 1 maintainer
MSstats 4.20.0
Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experi...13 versions - Latest release: 2 days ago - 8 dependent packages - 99.7 thousand downloads total - 1 maintainer
deltaGseg 1.52.0
deltaGseg7 versions - Latest release: 2 days ago - 27.5 thousand downloads total - 1 maintainer
edge 2.44.0
Extraction of Differential Gene Expression7 versions - Latest release: 2 days ago - 32.5 thousand downloads total - 20 stars on GitHub - 2 maintainers
GRENITS 1.64.0
Gene Regulatory Network Inference Using Time Series7 versions - Latest release: 3 days ago - 31.8 thousand downloads total - 1 maintainer
Top 5.4% on bioconductor.org
7 versions - Latest release: 4 days ago - 60.3 thousand downloads total - 1 maintainer
limmaGUI 1.88.0
GUI for limma Package With Two Color Microarrays7 versions - Latest release: 4 days ago - 60.3 thousand downloads total - 1 maintainer
AMARETTO 1.28.0
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis an...7 versions - Latest release: 5 days ago - 18.8 thousand downloads total - 1 maintainer
RNAdecay 1.32.0
Maximum Likelihood Decay Modeling of RNA Degradation Data9 versions - Latest release: 5 days ago - 12.9 thousand downloads total - 1 maintainer
Top 9.4% on bioconductor.org
7 versions - Latest release: 6 days ago - 35.6 thousand downloads total - 1 maintainer
RTCA 1.64.0
Open-source toolkit to analyse data from xCELLigence System (RTCA)7 versions - Latest release: 6 days ago - 35.6 thousand downloads total - 1 maintainer
Top 5.1% on bioconductor.org
7 versions - Latest release: 6 days ago - 59.1 thousand downloads total - 1 maintainer
timecourse 1.84.0
Statistical Analysis for Developmental Microarray Time Course Data7 versions - Latest release: 6 days ago - 59.1 thousand downloads total - 1 maintainer
acde 1.42.0
Artificial Components Detection of Differentially Expressed Genes7 versions - Latest release: 6 days ago - 26.3 thousand downloads total - 1 maintainer
blase 1.2.0
Bulk Linking Analysis for Single-cell Experiments2 versions - Latest release: 6 days ago - 1.62 thousand downloads total - 0 stars on GitHub - 1 maintainer
LiquidAssociation 1.66.0
LiquidAssociation7 versions - Latest release: 6 days ago - 1 dependent package - 36.4 thousand downloads total - 1 maintainer
CNORode 1.54.0
ODE add-on to CellNOptR7 versions - Latest release: 6 days ago - 1 dependent package - 36.3 thousand downloads total - 1 maintainer
flowTime 1.36.0
Annotation and analysis of biological dynamical systems using flow cytometry7 versions - Latest release: 7 days ago - 18.6 thousand downloads total - 1 maintainer
INSPEcT 1.42.0
Modeling RNA synthesis, processing and degradation with RNA-seq data8 versions - Latest release: 7 days ago - 27.5 thousand downloads total - 2 maintainers
Top 4.8% on bioconductor.org
7 versions - Latest release: 7 days ago - 80.8 thousand downloads total - 1 maintainer
affylmGUI 1.86.0
GUI for limma Package with Affymetrix Microarrays7 versions - Latest release: 7 days ago - 80.8 thousand downloads total - 1 maintainer
pengls 1.18.0
Fit Penalised Generalised Least Squares models7 versions - Latest release: 7 days ago - 8.05 thousand downloads total - 0 stars on GitHub - 1 maintainer
moanin 1.19.0
An R Package for Time Course RNASeq Data Analysis8 versions - Latest release: 8 days ago - 13 thousand downloads total - 1 maintainer
EventPointer 3.20.0
An effective identification of alternative splicing events using junction arrays and RNA-Seq data7 versions - Latest release: 8 days ago - 21 thousand downloads total - 4 stars on GitHub - 1 maintainer
GOexpress 1.46.0
Visualise microarray and RNAseq data using gene ontology annotations7 versions - Latest release: 8 days ago - 1 dependent package - 35.9 thousand downloads total - 9 stars on GitHub - 1 maintainer
msqrob2 1.20.0
Robust statistical inference for quantitative LC-MS proteomics8 versions - Latest release: 9 days ago - 16.4 thousand downloads total - 7 stars on GitHub - 1 maintainer
CoGAPS 3.32.0
Coordinated Gene Activity in Pattern Sets7 versions - Latest release: 9 days ago - 3 dependent packages - 45.5 thousand downloads total - 4 maintainers
Top 6.8% on bioconductor.org
7 versions - Latest release: 11 days ago - 75.7 thousand downloads total - 283 stars on GitHub - 1 maintainer
tradeSeq 1.26.0
trajectory-based differential expression analysis for sequencing data7 versions - Latest release: 11 days ago - 75.7 thousand downloads total - 283 stars on GitHub - 1 maintainer
timeOmics 1.24.0
Time-Course Multi-Omics data integration7 versions - Latest release: 12 days ago - 1 dependent package - 13.5 thousand downloads total - 21 stars on GitHub - 1 maintainer
scLANE 1.2.0
Model Gene Expression Dynamics with Spline-Based NB GLMs, GEEs, & GLMMs4 versions - Latest release: 13 days ago - 1.6 thousand downloads total - 12 stars on GitHub - 1 maintainer
CNORdt 1.52.0
Add-on to CellNOptR: Discretized time treatments6 versions - Latest release: 6 months ago - 29 thousand downloads total - 1 maintainer
ctsGE 1.38.0
Clustering of Time Series Gene Expression data7 versions - Latest release: 14 days ago - 19.1 thousand downloads total - 1 stars on GitHub - 1 maintainer
LACHESIS 1.0.0
Functions used to analyze early tumor evolution from whole genome sequencing data1 version - Latest release: 15 days ago - 863 downloads total - 1 maintainer
MultiRNAflow 1.8.0
An R package for integrated analysis of temporal RNA-seq data with multiple biological conditions5 versions - Latest release: 6 months ago - 7.09 thousand downloads total - 0 stars on GitHub - 1 maintainer
GRmetrics 1.36.0
Calculate growth-rate inhibition (GR) metrics6 versions - Latest release: 6 months ago - 24.4 thousand downloads total - 1 stars on GitHub - 2 maintainers
metaseqR2 1.22.4
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statisti...8 versions - Latest release: 21 days ago - 13.6 thousand downloads total - 1 maintainer
Top 3.3% on bioconductor.org
14 versions - Latest release: 6 months ago - 2 dependent packages - 201 thousand downloads total - 1 maintainer
DMRcate 3.6.0
Methylation array and sequencing spatial analysis methods14 versions - Latest release: 6 months ago - 2 dependent packages - 201 thousand downloads total - 1 maintainer
Trendy 1.32.0
Breakpoint analysis of time-course expression data7 versions - Latest release: 6 months ago - 16.9 thousand downloads total - 7 stars on GitHub - 1 maintainer
CellTrails 1.28.0
Reconstruction, visualization and analysis of branching trajectories6 versions - Latest release: 6 months ago - 14.8 thousand downloads total - 1 maintainer
tigre 1.64.0
Transcription factor Inference through Gaussian process Reconstruction of Expression6 versions - Latest release: 6 months ago - 36.5 thousand downloads total - 0 stars on GitHub - 1 maintainer
RolDE 1.14.0
RolDE: Robust longitudinal Differential Expression6 versions - Latest release: 6 months ago - 8.35 thousand downloads total - 5 stars on GitHub - 1 maintainer
mirTarRnaSeq 1.18.0
mirTarRnaSeq6 versions - Latest release: 6 months ago - 10.6 thousand downloads total - 1 maintainer
dearseq 1.22.0
Differential Expression Analysis for RNA-seq data through a robust variance component test6 versions - Latest release: 6 months ago - 2 dependent packages - 20.7 thousand downloads total - 6 stars on GitHub - 1 maintainer
TCseq 1.34.0
Time course sequencing data analysis6 versions - Latest release: 6 months ago - 42 thousand downloads total - 1 maintainer
rain 1.44.0
Rhythmicity Analysis Incorporating Non-parametric Methods6 versions - Latest release: 6 months ago - 29.2 thousand downloads total - 1 maintainer
roastgsa 1.8.0
Rotation based gene set analysis5 versions - Latest release: 6 months ago - 6.34 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 8.9% on bioconductor.org
6 versions - Latest release: 6 months ago - 6 dependent packages - 50.9 thousand downloads total - 1 maintainer
CellNOptR 1.56.0
Training of boolean logic models of signalling networks using prior knowledge networks and pertur...6 versions - Latest release: 6 months ago - 6 dependent packages - 50.9 thousand downloads total - 1 maintainer
MOSim 2.6.1
Multi-Omics Simulation (MOSim)7 versions - Latest release: about 1 month ago - 12.6 thousand downloads total - 10 stars on GitHub - 1 maintainer
Rnits 1.44.0
R Normalization and Inference of Time Series data6 versions - Latest release: 6 months ago - 22 thousand downloads total - 1 maintainer
TMixClust 1.32.0
Time Series Clustering of Gene Expression with Gaussian Mixed-Effects Models and Smoothing Splines6 versions - Latest release: 6 months ago - 17.6 thousand downloads total - 1 maintainer
ASpli 2.20.0
Analysis of Alternative Splicing Using RNA-Seq6 versions - Latest release: 6 months ago - 1 dependent package - 30.5 thousand downloads total - 1 maintainer
Top 4.2% on bioconductor.org
6 versions - Latest release: 6 months ago - 92.5 thousand downloads total - 1 maintainer
maSigPro 1.82.0
Significant Gene Expression Profile Differences in Time Course Gene Expression Data6 versions - Latest release: 6 months ago - 92.5 thousand downloads total - 1 maintainer
MetaboDynamics 2.0.2
Bayesian analysis of longitudinal metabolomics data4 versions - Latest release: 5 months ago - 3.94 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 3.4% on bioconductor.org
6 versions - Latest release: 6 months ago - 5 dependent packages - 183 thousand downloads total - 1 maintainer
Mfuzz 2.70.0
Soft clustering of omics time series data6 versions - Latest release: 6 months ago - 5 dependent packages - 183 thousand downloads total - 1 maintainer
Top 9.6% on bioconductor.org
6 versions - Latest release: 6 months ago - 37 thousand downloads total - 1 maintainer
cycle 1.64.0
Significance of periodic expression pattern in time-series data6 versions - Latest release: 6 months ago - 37 thousand downloads total - 1 maintainer
splineTimeR 1.38.0
Time-course differential gene expression data analysis using spline regression models followed by...6 versions - Latest release: 6 months ago - 20.4 thousand downloads total - 2 maintainers
DiscoRhythm 1.26.0
Interactive Workflow for Discovering Rhythmicity in Biological Data6 versions - Latest release: 6 months ago - 14.5 thousand downloads total - 12 stars on GitHub - 1 maintainer
netOmics 1.12.0 removed
Multi-Omics (time-course) network-based integration and interpretation4 versions - Latest release: over 1 year ago - 2.76 thousand downloads total - 14 stars on GitHub - 1 maintainer
TimiRGeN 1.11.0 removed
Time sensitive microRNA-mRNA integration, analysis and network generation tool3 versions - Latest release: over 2 years ago - 1 dependent package - 4.03 thousand downloads total - 2 stars on GitHub - 1 maintainer
MethCP 1.13.0 removed
Differential methylation anlsysis for bisulfite sequencing data1 version - Latest release: over 2 years ago - 2.97 thousand downloads total - 4 stars on GitHub - 1 maintainer
OmicsLonDA 1.18.0 removed
Omics Longitudinal Differential Analysis2 versions - Latest release: over 2 years ago - 5.95 thousand downloads total - 6 stars on GitHub - 1 maintainer
EBSeqHMM 1.38.0 removed
Bayesian analysis for identifying gene or isoform expression changes in ordered RNA-seq experiments3 versions - Latest release: almost 2 years ago - 17.8 thousand downloads total - 1 maintainer
plethy 1.40.0 removed
R framework for exploration and analysis of respirometry data2 versions - Latest release: over 2 years ago - 16.1 thousand downloads total - 1 maintainer
LineagePulse 1.21.0 removed
Differential expression analysis and model fitting for single-cell RNA-seq data2 versions - Latest release: over 2 years ago - 7.08 thousand downloads total - 11 stars on GitHub - 1 maintainer
Related Keywords
Software
62
GeneExpression
31
DifferentialExpression
30
ImmunoOncology
25
Sequencing
24
RNASeq
23
Regression
21
Clustering
21
Microarray
18
MultipleComparison
17
Transcription
16
Bayesian
13
CellBiology
13
Proteomics
13
Visualization
13
Normalization
12
GeneSetEnrichment
12
Transcriptomics
11
QualityControl
11
DataImport
11
Preprocessing
10
SystemsBiology
8
Pathways
8
CellBasedAssays
8
mRNAMicroarray
7
Genetics
7
DifferentialSplicing
7
BatchEffect
7
AlternativeSplicing
7
SingleCell
6
Network
6
StatisticalMethod
6
Epigenetics
6
Metabolomics
6
GeneRegulation
5
BiomedicalInformatics
5
TwoChannel
5
OneChannel
5
ProprietaryPlatforms
5
DifferentialMethylation
4
FunctionalGenomics
4
NetworkInference
4
WholeGenome
3
Survival
3
DimensionReduction
3
DataRepresentation
3
PrincipalComponent
3
WorkflowStep
3
GUI
3
MicroRNAArray
3
ChIPSeq
3
Coverage
3
ExonArray
3
GraphAndNetwork
3
Classification
2
GenomeAnnotation
2
miRNA
2
KEGG
2
MassSpectrometry
2
ExperimentalDesign
2
bioconductor
2
Cheminformatics
2
MethylationArray
2
DNAMethylation
2
ATACSeq
1
ReportWriting
1
biocViews
1
SmallRNA
1
HiddenMarkovModel
1
DNASeq
1
Alignment
1
Differential Expression
1
RNA-Seq
1
FunctionalPrediction
1
dynamics
1
functional-analysis
1
longitudinal-analysis
1
metabolomics-data
1
metabolomics-pipeline
1
Microbiome
1
Lipidomics
1
NetworkEnrichment
1
data-visualization
1
oscillations
1
package
1
webapp
1
r
1
Infastructure
1
rhythm-detection
1
SAGE
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CopyNumberVariation
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Bioinformatics
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Annotation
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GO
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