bioconductor.org "TimeCourse" keyword
View the packages on the bioconductor.org package registry that are tagged with the "TimeCourse" keyword.
deltaGseg 1.50.0
deltaGseg6 versions - Latest release: 2 months ago - 25.5 thousand downloads total - 1 maintainer
blase 1.0.0
Bulk Linking Analysis for Single-cell Experiments1 version - Latest release: 3 months ago - 721 downloads total - 0 stars on GitHub - 1 maintainer
Top 9.6% on bioconductor.org
6 versions - Latest release: 2 months ago - 35.5 thousand downloads total - 1 maintainer
cycle 1.64.0
Significance of periodic expression pattern in time-series data6 versions - Latest release: 2 months ago - 35.5 thousand downloads total - 1 maintainer
AMARETTO 1.26.0
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis an...6 versions - Latest release: 3 months ago - 16.9 thousand downloads total - 1 maintainer
ctsGE 1.36.0
Clustering of Time Series Gene Expression data6 versions - Latest release: 2 months ago - 17.6 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 5.1% on bioconductor.org
6 versions - Latest release: 2 months ago - 56.4 thousand downloads total - 1 maintainer
timecourse 1.82.0
Statistical Analysis for Developmental Microarray Time Course Data6 versions - Latest release: 2 months ago - 56.4 thousand downloads total - 1 maintainer
splineTimeR 1.38.0
Time-course differential gene expression data analysis using spline regression models followed by...6 versions - Latest release: 2 months ago - 19.3 thousand downloads total - 2 maintainers
rain 1.44.0
Rhythmicity Analysis Incorporating Non-parametric Methods6 versions - Latest release: 2 months ago - 27.5 thousand downloads total - 1 maintainer
EventPointer 3.18.0
An effective identification of alternative splicing events using junction arrays and RNA-Seq data6 versions - Latest release: 2 months ago - 18.8 thousand downloads total - 4 stars on GitHub - 1 maintainer
MOSim 2.6.0
Multi-Omics Simulation (MOSim)6 versions - Latest release: 2 months ago - 11.3 thousand downloads total - 10 stars on GitHub - 1 maintainer
pengls 1.16.0
Fit Penalised Generalised Least Squares models6 versions - Latest release: 2 months ago - 6.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
INSPEcT 1.40.0
Modeling RNA synthesis, processing and degradation with RNA-seq data7 versions - Latest release: 2 months ago - 25 thousand downloads total - 2 maintainers
RNAdecay 1.30.0
Maximum Likelihood Decay Modeling of RNA Degradation Data8 versions - Latest release: 3 months ago - 11.3 thousand downloads total - 1 maintainer
Top 8.9% on bioconductor.org
6 versions - Latest release: 2 months ago - 6 dependent packages - 49.1 thousand downloads total - 1 maintainer
CellNOptR 1.56.0
Training of boolean logic models of signalling networks using prior knowledge networks and pertur...6 versions - Latest release: 2 months ago - 6 dependent packages - 49.1 thousand downloads total - 1 maintainer
Rnits 1.44.0
R Normalization and Inference of Time Series data6 versions - Latest release: 2 months ago - 20.6 thousand downloads total - 1 maintainer
TCseq 1.34.0
Time course sequencing data analysis6 versions - Latest release: 2 months ago - 39.5 thousand downloads total - 1 maintainer
Top 3.4% on bioconductor.org
6 versions - Latest release: 3 months ago - 5 dependent packages - 178 thousand downloads total - 1 maintainer
Mfuzz 2.70.0
Soft clustering of omics time series data6 versions - Latest release: 3 months ago - 5 dependent packages - 178 thousand downloads total - 1 maintainer
CoGAPS 3.30.0
Coordinated Gene Activity in Pattern Sets6 versions - Latest release: 2 months ago - 3 dependent packages - 42.8 thousand downloads total - 4 maintainers
Top 5.4% on bioconductor.org
6 versions - Latest release: 2 months ago - 57.4 thousand downloads total - 1 maintainer
limmaGUI 1.86.0
GUI for limma Package With Two Color Microarrays6 versions - Latest release: 2 months ago - 57.4 thousand downloads total - 1 maintainer
tigre 1.64.0
Transcription factor Inference through Gaussian process Reconstruction of Expression6 versions - Latest release: 3 months ago - 34.7 thousand downloads total - 0 stars on GitHub - 1 maintainer
CNORode 1.52.0
ODE add-on to CellNOptR6 versions - Latest release: 2 months ago - 1 dependent package - 34.3 thousand downloads total - 1 maintainer
ASpli 2.20.0
Analysis of Alternative Splicing Using RNA-Seq6 versions - Latest release: 2 months ago - 1 dependent package - 28.8 thousand downloads total - 1 maintainer
Top 4.2% on bioconductor.org
6 versions - Latest release: 2 months ago - 90.2 thousand downloads total - 1 maintainer
maSigPro 1.82.0
Significant Gene Expression Profile Differences in Time Course Gene Expression Data6 versions - Latest release: 2 months ago - 90.2 thousand downloads total - 1 maintainer
acde 1.40.0
Artificial Components Detection of Differentially Expressed Genes6 versions - Latest release: 2 months ago - 24.3 thousand downloads total - 1 maintainer
flowTime 1.34.0
Annotation and analysis of biological dynamical systems using flow cytometry6 versions - Latest release: 2 months ago - 16.7 thousand downloads total - 1 maintainer
Trendy 1.32.0
Breakpoint analysis of time-course expression data7 versions - Latest release: 3 months ago - 15.6 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 4.7% on bioconductor.org
12 versions - Latest release: 5 days ago - 8 dependent packages - 94.3 thousand downloads total - 1 maintainer
MSstats 4.18.1
Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experi...12 versions - Latest release: 5 days ago - 8 dependent packages - 94.3 thousand downloads total - 1 maintainer
CellTrails 1.28.0
Reconstruction, visualization and analysis of branching trajectories6 versions - Latest release: 3 months ago - 13.4 thousand downloads total - 1 maintainer
GRmetrics 1.36.0
Calculate growth-rate inhibition (GR) metrics6 versions - Latest release: 3 months ago - 23 thousand downloads total - 1 stars on GitHub - 2 maintainers
MetaboDynamics 2.0.2
Bayesian analysis of longitudinal metabolomics data4 versions - Latest release: about 2 months ago - 3.24 thousand downloads total - 5 stars on GitHub - 1 maintainer
dearseq 1.22.0
Differential Expression Analysis for RNA-seq data through a robust variance component test6 versions - Latest release: 2 months ago - 2 dependent packages - 19.3 thousand downloads total - 6 stars on GitHub - 1 maintainer
edge 2.42.0
Extraction of Differential Gene Expression6 versions - Latest release: 3 months ago - 30.3 thousand downloads total - 20 stars on GitHub - 2 maintainers
TMixClust 1.32.0
Time Series Clustering of Gene Expression with Gaussian Mixed-Effects Models and Smoothing Splines6 versions - Latest release: 3 months ago - 16.4 thousand downloads total - 1 maintainer
Top 6.8% on bioconductor.org
6 versions - Latest release: 3 months ago - 69.7 thousand downloads total - 283 stars on GitHub - 1 maintainer
tradeSeq 1.24.0
trajectory-based differential expression analysis for sequencing data6 versions - Latest release: 3 months ago - 69.7 thousand downloads total - 283 stars on GitHub - 1 maintainer
Top 9.4% on bioconductor.org
6 versions - Latest release: 2 months ago - 33.5 thousand downloads total - 1 maintainer
RTCA 1.62.0
Open-source toolkit to analyse data from xCELLigence System (RTCA)6 versions - Latest release: 2 months ago - 33.5 thousand downloads total - 1 maintainer
roastgsa 1.8.0
Rotation based gene set analysis5 versions - Latest release: 2 months ago - 5.48 thousand downloads total - 0 stars on GitHub - 1 maintainer
GOexpress 1.44.0
Visualise microarray and RNAseq data using gene ontology annotations6 versions - Latest release: 3 months ago - 1 dependent package - 33.6 thousand downloads total - 9 stars on GitHub - 1 maintainer
Top 4.8% on bioconductor.org
6 versions - Latest release: 2 months ago - 77.7 thousand downloads total - 1 maintainer
affylmGUI 1.84.0
GUI for limma Package with Affymetrix Microarrays6 versions - Latest release: 2 months ago - 77.7 thousand downloads total - 1 maintainer
LiquidAssociation 1.64.0
LiquidAssociation6 versions - Latest release: 2 months ago - 1 dependent package - 34.3 thousand downloads total - 1 maintainer
moanin 1.18.0
An R Package for Time Course RNASeq Data Analysis7 versions - Latest release: 2 months ago - 11.5 thousand downloads total - 1 maintainer
RolDE 1.14.0
RolDE: Robust longitudinal Differential Expression6 versions - Latest release: 3 months ago - 7.39 thousand downloads total - 5 stars on GitHub - 1 maintainer
CONFESS 1.38.0
Cell OrderiNg by FluorEScence Signal6 versions - Latest release: 2 months ago - 18.2 thousand downloads total - 1 maintainer
Top 0.3% on bioconductor.org
16 versions - Latest release: 3 months ago - 322 dependent packages - 6.9 million downloads total - 1 maintainer
limma 3.66.0
Linear Models for Microarray and Omics Data16 versions - Latest release: 3 months ago - 322 dependent packages - 6.9 million downloads total - 1 maintainer
Top 0.6% on bioconductor.org
26 versions - Latest release: about 1 month ago - 181 dependent packages - 4.23 million downloads total - 4 maintainers
edgeR 4.8.2
Empirical Analysis of Digital Gene Expression Data in R26 versions - Latest release: about 1 month ago - 181 dependent packages - 4.23 million downloads total - 4 maintainers
timeOmics 1.22.0
Time-Course Multi-Omics data integration6 versions - Latest release: 3 months ago - 1 dependent package - 12 thousand downloads total - 21 stars on GitHub - 1 maintainer
DiscoRhythm 1.26.0
Interactive Workflow for Discovering Rhythmicity in Biological Data6 versions - Latest release: 3 months ago - 13.4 thousand downloads total - 13 stars on GitHub - 1 maintainer
msqrob2 1.18.0
Robust statistical inference for quantitative LC-MS proteomics7 versions - Latest release: 3 months ago - 14.2 thousand downloads total - 7 stars on GitHub - 1 maintainer
MultiRNAflow 1.8.0
An R package for integrated analysis of temporal RNA-seq data with multiple biological conditions5 versions - Latest release: 2 months ago - 6.09 thousand downloads total - 0 stars on GitHub - 1 maintainer
scLANE 1.0.0
Model Gene Expression Dynamics with Spline-Based NB GLMs, GEEs, & GLMMs1 version - Latest release: 3 months ago - 493 downloads total - 1 maintainer
mirTarRnaSeq 1.18.0
mirTarRnaSeq6 versions - Latest release: 3 months ago - 9.2 thousand downloads total - 1 maintainer
Top 3.3% on bioconductor.org
14 versions - Latest release: 2 months ago - 2 dependent packages - 195 thousand downloads total - 1 maintainer
DMRcate 3.6.0
Methylation array and sequencing spatial analysis methods14 versions - Latest release: 2 months ago - 2 dependent packages - 195 thousand downloads total - 1 maintainer
CNORdt 1.52.0
Add-on to CellNOptR: Discretized time treatments6 versions - Latest release: 2 months ago - 27.9 thousand downloads total - 1 maintainer
GRENITS 1.62.0
Gene Regulatory Network Inference Using Time Series6 versions - Latest release: 2 months ago - 29.4 thousand downloads total - 1 maintainer
metaseqR2 1.22.0
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statisti...6 versions - Latest release: 2 months ago - 11.5 thousand downloads total - 1 maintainer
TimiRGeN 1.11.0 removed
Time sensitive microRNA-mRNA integration, analysis and network generation tool3 versions - Latest release: over 2 years ago - 1 dependent package - 4.03 thousand downloads total - 2 stars on GitHub - 1 maintainer
MethCP 1.13.0 removed
Differential methylation anlsysis for bisulfite sequencing data1 version - Latest release: over 2 years ago - 2.97 thousand downloads total - 4 stars on GitHub - 1 maintainer
OmicsLonDA 1.18.0 removed
Omics Longitudinal Differential Analysis2 versions - Latest release: about 2 years ago - 5.95 thousand downloads total - 6 stars on GitHub - 1 maintainer
netOmics 1.12.0 removed
Multi-Omics (time-course) network-based integration and interpretation4 versions - Latest release: about 1 year ago - 2.76 thousand downloads total - 14 stars on GitHub - 1 maintainer
EBSeqHMM 1.38.0 removed
Bayesian analysis for identifying gene or isoform expression changes in ordered RNA-seq experiments3 versions - Latest release: over 1 year ago - 17.8 thousand downloads total - 1 maintainer
plethy 1.40.0 removed
R framework for exploration and analysis of respirometry data2 versions - Latest release: about 2 years ago - 16.1 thousand downloads total - 1 maintainer
LineagePulse 1.21.0 removed
Differential expression analysis and model fitting for single-cell RNA-seq data2 versions - Latest release: about 2 years ago - 7.08 thousand downloads total - 11 stars on GitHub - 1 maintainer
Related Keywords
Software
61
GeneExpression
31
DifferentialExpression
30
ImmunoOncology
25
RNASeq
23
Sequencing
23
Clustering
21
Regression
21
Microarray
18
MultipleComparison
17
Transcription
16
CellBiology
13
Bayesian
13
Visualization
13
Proteomics
13
Normalization
12
GeneSetEnrichment
12
Transcriptomics
11
QualityControl
11
DataImport
11
Preprocessing
10
SystemsBiology
8
CellBasedAssays
8
Pathways
8
Genetics
7
mRNAMicroarray
7
AlternativeSplicing
7
BatchEffect
7
DifferentialSplicing
7
Network
6
SingleCell
6
Epigenetics
6
BiomedicalInformatics
5
OneChannel
5
ProprietaryPlatforms
5
StatisticalMethod
5
TwoChannel
5
Metabolomics
5
GeneRegulation
5
DifferentialMethylation
4
FunctionalGenomics
4
NetworkInference
4
DimensionReduction
3
ChIPSeq
3
GUI
3
Coverage
3
PrincipalComponent
3
DataRepresentation
3
WorkflowStep
3
GraphAndNetwork
3
MicroRNAArray
3
ExonArray
3
bioconductor
2
Classification
2
Survival
2
DNAMethylation
2
Cheminformatics
2
WholeGenome
2
miRNA
2
KEGG
2
MassSpectrometry
2
ExperimentalDesign
2
MethylationArray
2
GenomeAnnotation
2
FunctionalPrediction
1
GenePrediction
1
Metagenomics
1
cluster
1
integration
1
multi-omics
1
time-series
1
data-visualization
1
oscillations
1
package
1
r
1
rhythm-detection
1
webapp
1
SmallRNA
1
CopyNumberVariation
1
ATACSeq
1
ReportWriting
1
Lipidomics
1
Microbiome
1
HiddenMarkovModel
1
Infastructure
1
biocViews
1
FlowCytometry
1
RNA-Seq
1
dynamics
1
functional-analysis
1
longitudinal-analysis
1
metabolomics-data
1
metabolomics-pipeline
1
Differential Expression
1
DNASeq
1
Infrastructure
1
Alignment
1
Bioinformatics
1
Annotation
1
GO
1