bioconductor.org "TwoChannel" keyword
Top 1.4% on bioconductor.org
7 versions - Latest release: 13 days ago - 47 dependent packages - 2.41 million downloads total - 111 stars on GitHub - 1 maintainer
GEOquery 2.80.0
Get data from NCBI Gene Expression Omnibus (GEO)7 versions - Latest release: 13 days ago - 47 dependent packages - 2.41 million downloads total - 111 stars on GitHub - 1 maintainer
Top 1.7% on bioconductor.org
8 versions - Latest release: 13 days ago - 30 dependent packages - 1.2 million downloads total - 1 maintainer
vsn 3.80.0
Variance stabilization and calibration for microarray data8 versions - Latest release: 13 days ago - 30 dependent packages - 1.2 million downloads total - 1 maintainer
Top 1.8% on bioconductor.org
7 versions - Latest release: 13 days ago - 10 dependent packages - 413 thousand downloads total - 1 maintainer
lumi 2.64.0
BeadArray Specific Methods for Illumina Methylation and Expression Microarrays7 versions - Latest release: 13 days ago - 10 dependent packages - 413 thousand downloads total - 1 maintainer
ExiMiR 2.54.0
R functions for the normalization of Exiqon miRNA array data7 versions - Latest release: about 23 hours ago - 35.5 thousand downloads total - 1 maintainer
Top 5.4% on bioconductor.org
7 versions - Latest release: 1 day ago - 60.3 thousand downloads total - 1 maintainer
limmaGUI 1.88.0
GUI for limma Package With Two Color Microarrays7 versions - Latest release: 1 day ago - 60.3 thousand downloads total - 1 maintainer
Top 1.9% on bioconductor.org
9 versions - Latest release: 11 days ago - 31 dependent packages - 963 thousand downloads total - 63 stars on GitHub - 1 maintainer
minfi 1.58.0
Analyze Illumina Infinium DNA methylation arrays9 versions - Latest release: 11 days ago - 31 dependent packages - 963 thousand downloads total - 63 stars on GitHub - 1 maintainer
bigmelon 1.38.0
Illumina methylation array analysis for large experiments7 versions - Latest release: 1 day ago - 23.8 thousand downloads total - 1 maintainer
AMARETTO 1.28.0
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis an...7 versions - Latest release: 2 days ago - 18.8 thousand downloads total - 1 maintainer
Top 4.3% on bioconductor.org
8 versions - Latest release: 2 days ago - 218 thousand downloads total - 1 stars on GitHub - 1 maintainer
arrayQualityMetrics 3.68.0
Quality metrics report for microarray data sets8 versions - Latest release: 2 days ago - 218 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 0.3% on bioconductor.org
19 versions - Latest release: 5 days ago - 322 dependent packages - 7.15 million downloads total - 1 maintainer
limma 3.68.2
Linear Models for Microarray and Omics Data19 versions - Latest release: 5 days ago - 322 dependent packages - 7.15 million downloads total - 1 maintainer
Top 9.8% on bioconductor.org
8 versions - Latest release: 3 days ago - 1 dependent package - 42.9 thousand downloads total - 1 maintainer
EGSEA 1.40.0
Ensemble of Gene Set Enrichment Analyses8 versions - Latest release: 3 days ago - 1 dependent package - 42.9 thousand downloads total - 1 maintainer
Top 5.4% on bioconductor.org
7 versions - Latest release: 3 days ago - 5 dependent packages - 187 thousand downloads total - 1 maintainer
wateRmelon 2.18.0
Illumina DNA methylation array normalization and metrics7 versions - Latest release: 3 days ago - 5 dependent packages - 187 thousand downloads total - 1 maintainer
ENmix 1.48.0
Quality control and analysis tools for Illumina DNA methylation BeadChip13 versions - Latest release: 3 days ago - 51.4 thousand downloads total - 1 maintainer
skewr 1.44.0
Visualize Intensities Produced by Illumina's Human Methylation 450k BeadChip7 versions - Latest release: 3 days ago - 20.5 thousand downloads total - 1 maintainer
RegEnrich 1.21.0
Gene regulator enrichment analysis9 versions - Latest release: 4 days ago - 16.3 thousand downloads total - 1 maintainer
Top 8.4% on bioconductor.org
7 versions - Latest release: 4 days ago - 38 thousand downloads total - 1 maintainer
stepNorm 1.84.0
Stepwise normalization functions for cDNA microarrays7 versions - Latest release: 4 days ago - 38 thousand downloads total - 1 maintainer
Top 8.8% on bioconductor.org
7 versions - Latest release: 4 days ago - 38.9 thousand downloads total - 1 maintainer
nnNorm 2.76.0
Spatial and intensity based normalization of cDNA microarray data based on robust neural nets7 versions - Latest release: 4 days ago - 38.9 thousand downloads total - 1 maintainer
MSstatsShiny 1.14.0
MSstats GUI for Statistical Anaylsis of Proteomics Experiments12 versions - Latest release: 5 days ago - 11 thousand downloads total - 9 stars on GitHub - 1 maintainer
Top 8.7% on bioconductor.org
7 versions - Latest release: 5 days ago - 39.1 thousand downloads total - 1 maintainer
genArise 1.88.0
Microarray Analysis tool7 versions - Latest release: 5 days ago - 39.1 thousand downloads total - 1 maintainer
Top 4.5% on bioconductor.org
7 versions - Latest release: 5 days ago - 4 dependent packages - 82.8 thousand downloads total - 1 maintainer
convert 1.88.0
Convert Microarray Data Objects7 versions - Latest release: 5 days ago - 4 dependent packages - 82.8 thousand downloads total - 1 maintainer
Top 6.6% on bioconductor.org
7 versions - Latest release: 6 days ago - 7 dependent packages - 397 thousand downloads total - 8 stars on GitHub - 1 maintainer
methylumi 2.58.0
Handle Illumina methylation data7 versions - Latest release: 6 days ago - 7 dependent packages - 397 thousand downloads total - 8 stars on GitHub - 1 maintainer
Top 4.3% on bioconductor.org
8 versions - Latest release: 6 days ago - 1 dependent package - 162 thousand downloads total - 1 maintainer
ChAMP 2.42.0
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC8 versions - Latest release: 6 days ago - 1 dependent package - 162 thousand downloads total - 1 maintainer
Top 3.2% on bioconductor.org
9 versions - Latest release: 8 days ago - 11 dependent packages - 524 thousand downloads total - 3 stars on GitHub - 1 maintainer
oligo 1.76.0
Preprocessing tools for oligonucleotide arrays9 versions - Latest release: 8 days ago - 11 dependent packages - 524 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 6.5% on bioconductor.org
7 versions - Latest release: 8 days ago - 2 dependent packages - 55.9 thousand downloads total - 1 maintainer
PADOG 1.54.0
Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)7 versions - Latest release: 8 days ago - 2 dependent packages - 55.9 thousand downloads total - 1 maintainer
diffcoexp 1.32.0
Differential Co-expression Analysis7 versions - Latest release: 9 days ago - 20.1 thousand downloads total - 17 stars on GitHub - 1 maintainer
iCheck 1.42.0
QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data7 versions - Latest release: 9 days ago - 21.1 thousand downloads total - 1 maintainer
Top 9.0% on bioconductor.org
7 versions - Latest release: 10 days ago - 41.4 thousand downloads total - 1 maintainer
daMA 1.84.0
Efficient design and analysis of factorial two-colour microarray data7 versions - Latest release: 10 days ago - 41.4 thousand downloads total - 1 maintainer
Top 8.8% on bioconductor.org
7 versions - Latest release: 12 days ago - 38.7 thousand downloads total - 1 maintainer
OLINgui 1.86.0
Graphical user interface for OLIN7 versions - Latest release: 12 days ago - 38.7 thousand downloads total - 1 maintainer
cytomapper 1.24.0
Visualization of highly multiplexed imaging data in R7 versions - Latest release: 13 days ago - 3 dependent packages - 36.5 thousand downloads total - 34 stars on GitHub - 1 maintainer
MAGAR 1.20.0
MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation an...7 versions - Latest release: 13 days ago - 11.3 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 8.3% on bioconductor.org
6 versions - Latest release: 6 months ago - 41.7 thousand downloads total - 1 maintainer
MANOR 1.82.0
CGH Micro-Array NORmalization6 versions - Latest release: 6 months ago - 41.7 thousand downloads total - 1 maintainer
MSstatsLiP 1.16.0
LiP Significance Analysis in shotgun mass spectrometry-based proteomic experiments10 versions - Latest release: 6 months ago - 10.6 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 7.0% on bioconductor.org
6 versions - Latest release: 5 months ago - 45.9 thousand downloads total - 1 maintainer
SCAN.UPC 2.52.0
Single-channel array normalization (SCAN) and Universal exPression Codes (UPC)6 versions - Latest release: 5 months ago - 45.9 thousand downloads total - 1 maintainer
Top 3.3% on bioconductor.org
14 versions - Latest release: 5 months ago - 2 dependent packages - 201 thousand downloads total - 1 maintainer
DMRcate 3.6.0
Methylation array and sequencing spatial analysis methods14 versions - Latest release: 5 months ago - 2 dependent packages - 201 thousand downloads total - 1 maintainer
Top 8.0% on bioconductor.org
6 versions - Latest release: 6 months ago - 2 dependent packages - 42.3 thousand downloads total - 1 maintainer
OLIN 1.88.0
Optimized local intensity-dependent normalisation of two-color microarrays6 versions - Latest release: 6 months ago - 2 dependent packages - 42.3 thousand downloads total - 1 maintainer
shinyMethyl 1.46.0
Interactive visualization for Illumina methylation arrays6 versions - Latest release: 5 months ago - 36.9 thousand downloads total - 6 stars on GitHub - 1 maintainer
TurboNorm 1.58.0
A fast scatterplot smoother suitable for microarray normalization6 versions - Latest release: 5 months ago - 32.5 thousand downloads total - 1 maintainer
Top 3.0% on bioconductor.org
6 versions - Latest release: 6 months ago - 4 dependent packages - 235 thousand downloads total - 5 stars on GitHub - 1 maintainer
gage 2.60.0
Generally Applicable Gene-set Enrichment for Pathway Analysis6 versions - Latest release: 6 months ago - 4 dependent packages - 235 thousand downloads total - 5 stars on GitHub - 1 maintainer
normalize450K 1.38.0
Preprocessing of Illumina Infinium 450K data6 versions - Latest release: 5 months ago - 17 thousand downloads total - 1 maintainer
Top 5.3% on bioconductor.org
6 versions - Latest release: 5 months ago - 1 dependent package - 58 thousand downloads total - 1 maintainer
puma 3.52.0
Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and ex...6 versions - Latest release: 5 months ago - 1 dependent package - 58 thousand downloads total - 1 maintainer
MethylAid 1.44.0
Visual and interactive quality control of large Illumina DNA Methylation array data sets6 versions - Latest release: 6 months ago - 29.9 thousand downloads total - 1 maintainer
Top 8.9% on bioconductor.org
6 versions - Latest release: 5 months ago - 42.7 thousand downloads total - 1 maintainer
copa 1.78.0
Functions to perform cancer outlier profile analysis.6 versions - Latest release: 5 months ago - 42.7 thousand downloads total - 1 maintainer
Top 6.2% on bioconductor.org
6 versions - Latest release: 6 months ago - 77.1 thousand downloads total - 1 maintainer
arrayQuality 1.88.0
Assessing array quality on spotted arrays6 versions - Latest release: 6 months ago - 77.1 thousand downloads total - 1 maintainer
roastgsa 1.8.0
Rotation based gene set analysis5 versions - Latest release: 5 months ago - 6.34 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 2.2% on bioconductor.org
6 versions - Latest release: 6 months ago - 21 dependent packages - 658 thousand downloads total - 1 maintainer
marray 1.88.0
Exploratory analysis for two-color spotted microarray data6 versions - Latest release: 6 months ago - 21 dependent packages - 658 thousand downloads total - 1 maintainer
Top 3.8% on bioconductor.org
6 versions - Latest release: 6 months ago - 3 dependent packages - 423 thousand downloads total - 1 stars on GitHub - 1 maintainer
aroma.light 3.40.0
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Da...6 versions - Latest release: 6 months ago - 3 dependent packages - 423 thousand downloads total - 1 stars on GitHub - 1 maintainer
MSstatsLOBD 1.18.0
Assay characterization: estimation of limit of blanc(LoB) and limit of detection(LOD)6 versions - Latest release: 5 months ago - 8.51 thousand downloads total - 0 stars on GitHub - 1 maintainer
cytoviewer 1.10.0
An interactive multi-channel image viewer for R6 versions - Latest release: 6 months ago - 9 thousand downloads total - 7 stars on GitHub - 1 maintainer
Top 4.5% on bioconductor.org
7 versions - Latest release: 5 months ago - 1 dependent package - 154 thousand downloads total - 1 maintainer
ArrayExpress 1.70.0
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures:...7 versions - Latest release: 5 months ago - 1 dependent package - 154 thousand downloads total - 1 maintainer
mCSEA 1.30.1
Methylated CpGs Set Enrichment Analysis8 versions - Latest release: 4 months ago - 1 dependent package - 18.5 thousand downloads total - 1 maintainer
MSstatsPTM 2.12.0
Statistical Characterization of Post-translational Modifications12 versions - Latest release: 5 months ago - 2 dependent packages - 20.1 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 9.3% on bioconductor.org
6 versions - Latest release: 6 months ago - 38.7 thousand downloads total - 1 maintainer
dyebias 1.70.0
The GASSCO method for correcting for slide-dependent gene-specific dye bias6 versions - Latest release: 6 months ago - 38.7 thousand downloads total - 1 maintainer
SNAGEE 1.50.0
Signal-to-Noise applied to Gene Expression Experiments6 versions - Latest release: 5 months ago - 26.7 thousand downloads total - 1 maintainer
Top 4.7% on bioconductor.org
6 versions - Latest release: 5 months ago - 1 dependent package - 81.9 thousand downloads total - 1 maintainer
RnBeads 2.28.0
RnBeads6 versions - Latest release: 5 months ago - 1 dependent package - 81.9 thousand downloads total - 1 maintainer
ARRmNormalization 1.50.0
Adaptive Robust Regression normalization for Illumina methylation data6 versions - Latest release: 5 months ago - 31 thousand downloads total - 1 maintainer
lmdme 1.52.0
Linear Model decomposition for Designed Multivariate Experiments6 versions - Latest release: 5 months ago - 29.8 thousand downloads total - 1 maintainer
snm 1.58.0
Supervised Normalization of Microarrays6 versions - Latest release: 5 months ago - 1 dependent package - 46.9 thousand downloads total - 1 maintainer
Top 9.3% on bioconductor.org
6 versions - Latest release: 5 months ago - 38.5 thousand downloads total - 1 maintainer
HELP 1.68.0
Tools for HELP data analysis6 versions - Latest release: 5 months ago - 38.5 thousand downloads total - 1 maintainer
REMP 1.28.0
Repetitive Element Methylation Prediction3 versions - Latest release: almost 2 years ago - 12.8 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 9.5% on bioconductor.org
3 versions - Latest release: almost 2 years ago - 38.5 thousand downloads total - 1 maintainer
beadarraySNP 1.70.0 removed
Normalization and reporting of Illumina SNP bead arrays3 versions - Latest release: almost 2 years ago - 38.5 thousand downloads total - 1 maintainer
Top 8.1% on bioconductor.org
3 versions - Latest release: almost 2 years ago - 30.9 thousand downloads total - 1 maintainer
maigesPack 1.68.0 removed
Functions to handle cDNA microarray data, including several methods of data analysis3 versions - Latest release: almost 2 years ago - 30.9 thousand downloads total - 1 maintainer
Top 8.8% on bioconductor.org
3 versions - Latest release: almost 2 years ago - 27.4 thousand downloads total - 1 maintainer
SMAP 1.68.0 removed
A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling3 versions - Latest release: almost 2 years ago - 27.4 thousand downloads total - 1 maintainer
snapCGH 1.72.0 removed
Segmentation, normalisation and processing of aCGH data2 versions - Latest release: over 2 years ago - 2 dependent packages - 41.8 thousand downloads total - 1 maintainer
Top 3.5% on bioconductor.org
2 versions - Latest release: over 2 years ago - 2 dependent packages - 86.1 thousand downloads total - 1 maintainer
Ringo 1.66.0 removed
R Investigation of ChIP-chip Oligoarrays2 versions - Latest release: over 2 years ago - 2 dependent packages - 86.1 thousand downloads total - 1 maintainer
Related Keywords
Software
64
Microarray
52
Preprocessing
40
QualityControl
32
OneChannel
31
DataImport
21
DifferentialExpression
21
DNAMethylation
20
ImmunoOncology
16
Normalization
15
MethylationArray
14
GeneExpression
14
Sequencing
10
MultipleComparison
10
Epigenetics
9
Visualization
8
BatchEffect
8
RNASeq
8
DifferentialMethylation
8
Transcription
7
Proteomics
7
ExonArray
6
CopyNumberVariation
6
Clustering
6
CpGIsland
6
MultiChannel
6
mRNAMicroarray
6
Regression
6
GeneSetEnrichment
6
TimeCourse
5
Genetics
5
Bayesian
5
SystemsBiology
4
Network
4
MassSpectrometry
4
AlternativeSplicing
4
DifferentialSplicing
4
MicroRNAArray
3
ProprietaryPlatforms
3
Pathways
3
GraphAndNetwork
3
SNP
3
bioconductor
3
Metabolomics
3
Transcriptomics
3
GUI
3
r
3
GeneTarget
2
GO
2
NetworkEnrichment
2
Infrastructure
2
proteomics
2
GenomeAnnotation
2
MethylSeq
2
GeneticVariability
2
SingleCell
2
Coverage
2
Classification
2
FunctionalGenomics
2
Cheminformatics
2
CellBiology
2
BiomedicalInformatics
2
data-science
1
bioinformatics
1
WholeGenome
1
ChipOnChip
1
HTA2.0
1
Survival
1
package
1
mass-spectrometry
1
SAGE
1
Spatial
1
imaging
1
shiny
1
visualization
1
post-translational-modification
1
Cancer
1
ExperimentData
1
GenomeWideAssociation
1
ThirdPartyClient
1
GeneSignaling
1
KEGG
1
PrincipalComponent
1
FunctionalPrediction
1
NetworkInference
1
ReportWriting
1
ShinyApps
1
StatisticalMethod
1
CopyNumber
1
GeneRegulation
1
u24ca289073
1
rstats
1
ncbi-geo
1
bioimaging
1
imaging-mass-cytometry
1
single-cell
1
spatial-analysis
1
genomics
1