bioconductor.org "VariantDetection" keyword
View the packages on the bioconductor.org package registry that are tagged with the "VariantDetection" keyword.
Top 1.8% on bioconductor.org
7 versions - Latest release: 3 months ago - 14 dependent packages - 363 thousand downloads total - 2 maintainers
Rsubread 2.22.1
Mapping, quantification and variant analysis of sequencing data7 versions - Latest release: 3 months ago - 14 dependent packages - 363 thousand downloads total - 2 maintainers
scQTLtools 1.0.3
An R package for single-cell eQTL analysis and visualization3 versions - Latest release: about 1 month ago - 1.44 thousand downloads total - 0 stars on GitHub - 1 maintainer
lineagespot 1.12.0
Detection of SARS-CoV-2 lineages in wastewater samples using next-generation sequencing5 versions - Latest release: 3 months ago - 5.29 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 4.7% on bioconductor.org
6 versions - Latest release: 3 months ago - 117 thousand downloads total - 615 stars on GitHub - 1 maintainer
infercnv 1.24.0
Infer Copy Number Variation from Single-Cell RNA-Seq Data6 versions - Latest release: 3 months ago - 117 thousand downloads total - 615 stars on GitHub - 1 maintainer
svaRetro 1.14.0
Retrotransposed transcript detection from structural variants5 versions - Latest release: 3 months ago - 5.92 thousand downloads total - 1 stars on GitHub - 1 maintainer
CrispRVariants 1.36.0
Tools for counting and visualising mutations in a target location5 versions - Latest release: 3 months ago - 21.9 thousand downloads total - 1 maintainer
RVS 1.30.0
Computes estimates of the probability of related individuals sharing a rare variant5 versions - Latest release: 3 months ago - 11.4 thousand downloads total - 1 maintainer
MADSEQ 1.34.0
Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data5 versions - Latest release: 3 months ago - 13.9 thousand downloads total - 4 stars on GitHub - 1 maintainer
appreci8R 1.26.0
appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity an...6 versions - Latest release: 3 months ago - 11.6 thousand downloads total - 1 maintainer
SICtools 1.38.0
Find SNV/Indel differences between two bam files with near relationship5 versions - Latest release: 3 months ago - 14.7 thousand downloads total - 1 maintainer
PureCN 2.14.1
Copy number calling and SNV classification using targeted short read sequencing8 versions - Latest release: 2 months ago - 32.3 thousand downloads total - 134 stars on GitHub - 1 maintainer
panelcn.mops 1.30.0
CNV detection tool for targeted NGS panel data5 versions - Latest release: 3 months ago - 1 dependent package - 14.8 thousand downloads total - 1 maintainer
MMAPPR2 1.18.0 removed
Mutation Mapping Analysis Pipeline for Pooled RNA-Seq3 versions - Latest release: about 1 year ago - 3.62 thousand downloads total - 1 maintainer
Related Keywords
Software
13
Sequencing
9
Genetics
6
GenomicVariation
5
VariantAnnotation
5
Coverage
4
CopyNumberVariation
4
GeneticVariability
4
ImmunoOncology
4
SNP
4
SingleCell
3
DataImport
2
Bayesian
2
Visualization
2
SequenceMatching
2
Alignment
2
GeneExpression
2
RNASeq
2
QualityControl
2
CRISPR
1
DataRepresentation
1
ExomeSeq
1
GenomeWideAssociation
1
WholeGenome
1
SomaticMutation
1
bioconductor-package
1
cell-free-dna
1
copy-number
1
loh
1
tumor-heterogeneity
1
tumor-mutational-burden
1
tumor-purity
1
CellBiology
1
DNASeq
1
PooledScreens
1
Preprocessing
1
MultipleSequenceAlignment
1
IndelDetection
1
DifferentialExpression
1
FunctionalGenomics
1
GenomeAnnotation
1
Normalization
1
Regression
1
SystemsBiology
1
GeneRegulation
1
GeneFusionDetection
1
HiddenMarkovModel
1
StatisticalMethod
1
StructuralVariation
1
Transcriptomics
1
Annotation
1
ChIPSeq
1