bioconductor.org "VariantDetection" keyword
Top 1.8% on bioconductor.org
9 versions - Latest release: 25 days ago - 14 dependent packages - 428 thousand downloads total - 2 maintainers
Rsubread 2.26.0
Mapping, quantification and variant analysis of sequencing data9 versions - Latest release: 25 days ago - 14 dependent packages - 428 thousand downloads total - 2 maintainers
panelcn.mops 1.34.0
CNV detection tool for targeted NGS panel data7 versions - Latest release: 4 days ago - 1 dependent package - 21.4 thousand downloads total - 1 maintainer
scQTLtools 1.4.0
scQTLtools: an R/Bioconductor package for comprehensive identification and visualization of singl...7 versions - Latest release: 5 days ago - 3.38 thousand downloads total - 5 stars on GitHub - 1 maintainer
SICtools 1.42.0
Find SNV/Indel differences between two bam files with near relationship7 versions - Latest release: 8 days ago - 19.6 thousand downloads total - 1 maintainer
MADSEQ 1.36.0 removed
Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data6 versions - Latest release: 6 months ago - 15.9 thousand downloads total - 4 stars on GitHub - 1 maintainer
CrispRVariants 1.40.0
Tools for counting and visualising mutations in a target location7 versions - Latest release: 19 days ago - 28.2 thousand downloads total - 1 maintainer
PureCN 2.18.0
Copy number calling and SNV classification using targeted short read sequencing11 versions - Latest release: 21 days ago - 40.6 thousand downloads total - 144 stars on GitHub - 1 maintainer
lineagespot 1.16.0
Detection of SARS-CoV-2 lineages in wastewater samples using next-generation sequencing7 versions - Latest release: 21 days ago - 8.3 thousand downloads total - 2 stars on GitHub - 1 maintainer
fRagmentomics 1.0.0
Extract Fragmentomics Features and Mutational Status1 version - Latest release: 25 days ago - 290 downloads total - 1 maintainer
ClonalSim 1.0.0
Simulation of Tumor Clonal Evolution with Realistic Sequencing Noise1 version - Latest release: 25 days ago - 20 downloads total - 1 maintainer
Top 4.7% on bioconductor.org
7 versions - Latest release: 6 months ago - 174 thousand downloads total - 646 stars on GitHub - 1 maintainer
infercnv 1.26.0
Infer Copy Number Variation from Single-Cell RNA-Seq Data7 versions - Latest release: 6 months ago - 174 thousand downloads total - 646 stars on GitHub - 1 maintainer
svaRetro 1.16.6
Retrotransposed transcript detection from structural variants7 versions - Latest release: 2 months ago - 8.78 thousand downloads total - 1 stars on GitHub - 1 maintainer
appreci8R 1.28.0
appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity an...7 versions - Latest release: 6 months ago - 15.2 thousand downloads total - 1 maintainer
RVS 1.32.0
Computes estimates of the probability of related individuals sharing a rare variant6 versions - Latest release: 6 months ago - 14.7 thousand downloads total - 1 maintainer
MMAPPR2 1.18.0 removed
Mutation Mapping Analysis Pipeline for Pooled RNA-Seq3 versions - Latest release: about 2 years ago - 3.62 thousand downloads total - 1 maintainer
Related Keywords
Software
15
Sequencing
11
Genetics
7
Coverage
5
GenomicVariation
5
VariantAnnotation
5
CopyNumberVariation
4
GeneticVariability
4
ImmunoOncology
4
SNP
4
DataImport
3
Visualization
3
SingleCell
3
Alignment
3
DNASeq
2
SomaticMutation
2
Bayesian
2
GeneExpression
2
QualityControl
2
SequenceMatching
2
Preprocessing
2
RNASeq
2
MultipleSequenceAlignment
2
IndelDetection
2
GenomeAnnotation
1
cell-free-dna
1
copy-number
1
PooledScreens
1
WholeGenome
1
loh
1
tumor-heterogeneity
1
tumor-mutational-burden
1
tumor-purity
1
GenomeWideAssociation
1
ExomeSeq
1
HiddenMarkovModel
1
StatisticalMethod
1
StructuralVariation
1
Transcriptomics
1
Annotation
1
CellBiology
1
GeneRegulation
1
GeneFusionDetection
1
DifferentialExpression
1
FunctionalGenomics
1
Normalization
1
Regression
1
SystemsBiology
1
rna-seq
1
sc-eqtl
1
snp
1
visualization
1
ChIPSeq
1
CRISPR
1
DataRepresentation
1
bioconductor-package
1