bioconductor.org "VariantDetection" keyword
Top 1.8% on bioconductor.org
8 versions - Latest release: 4 months ago - 14 dependent packages - 417 thousand downloads total - 2 maintainers
Rsubread 2.24.0
Mapping, quantification and variant analysis of sequencing data8 versions - Latest release: 4 months ago - 14 dependent packages - 417 thousand downloads total - 2 maintainers
lineagespot 1.14.0
Detection of SARS-CoV-2 lineages in wastewater samples using next-generation sequencing6 versions - Latest release: 3 months ago - 7.41 thousand downloads total - 2 stars on GitHub - 1 maintainer
PureCN 2.16.1
Copy number calling and SNV classification using targeted short read sequencing10 versions - Latest release: 4 days ago - 37.5 thousand downloads total - 144 stars on GitHub - 1 maintainer
CrispRVariants 1.38.0
Tools for counting and visualising mutations in a target location6 versions - Latest release: 3 months ago - 26.2 thousand downloads total - 1 maintainer
MADSEQ 1.36.0
Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data6 versions - Latest release: 3 months ago - 15.5 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 4.7% on bioconductor.org
7 versions - Latest release: 3 months ago - 163 thousand downloads total - 646 stars on GitHub - 1 maintainer
infercnv 1.26.0
Infer Copy Number Variation from Single-Cell RNA-Seq Data7 versions - Latest release: 3 months ago - 163 thousand downloads total - 646 stars on GitHub - 1 maintainer
svaRetro 1.15.1
Retrotransposed transcript detection from structural variants6 versions - Latest release: 4 months ago - 7.56 thousand downloads total - 1 stars on GitHub - 1 maintainer
SICtools 1.40.0
Find SNV/Indel differences between two bam files with near relationship6 versions - Latest release: 3 months ago - 17.6 thousand downloads total - 1 maintainer
scQTLtools 1.2.3
scQTLtools: an R/Bioconductor package for comprehensive identification and visualization of singl...5 versions - Latest release: 27 days ago - 2.28 thousand downloads total - 0 stars on GitHub - 1 maintainer
panelcn.mops 1.32.0
CNV detection tool for targeted NGS panel data6 versions - Latest release: 3 months ago - 1 dependent package - 19.3 thousand downloads total - 1 maintainer
RVS 1.32.0
Computes estimates of the probability of related individuals sharing a rare variant6 versions - Latest release: 3 months ago - 13.7 thousand downloads total - 1 maintainer
appreci8R 1.28.0
appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity an...7 versions - Latest release: 3 months ago - 14 thousand downloads total - 1 maintainer
MMAPPR2 1.18.0 removed
Mutation Mapping Analysis Pipeline for Pooled RNA-Seq3 versions - Latest release: almost 2 years ago - 3.62 thousand downloads total - 1 maintainer
Related Keywords
Software
13
Sequencing
9
Genetics
6
GenomicVariation
5
VariantAnnotation
5
Coverage
4
GeneticVariability
4
CopyNumberVariation
4
ImmunoOncology
4
SNP
4
SingleCell
3
Bayesian
2
Visualization
2
DataImport
2
SequenceMatching
2
RNASeq
2
QualityControl
2
Preprocessing
2
Alignment
2
GeneExpression
2
ChIPSeq
1
StatisticalMethod
1
PooledScreens
1
StructuralVariation
1
Transcriptomics
1
Annotation
1
DNASeq
1
DifferentialExpression
1
FunctionalGenomics
1
Normalization
1
Regression
1
SystemsBiology
1
WholeGenome
1
GenomeWideAssociation
1
ExomeSeq
1
CellBiology
1
GeneFusionDetection
1
GeneRegulation
1
GenomeAnnotation
1
IndelDetection
1
MultipleSequenceAlignment
1
bioconductor-package
1
cell-free-dna
1
copy-number
1
loh
1
tumor-heterogeneity
1
tumor-mutational-burden
1
tumor-purity
1
CRISPR
1
DataRepresentation
1
SomaticMutation
1
HiddenMarkovModel
1