Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "WorkflowStep" keyword
mina 1.10.0
Microbial community dIversity and Network Analysis3 versions - Latest release: 6 months ago - 2.83 thousand downloads total - 5 stars on GitHub - 1 maintainer
RNAmodR.ML 1.16.0
Detecting patterns of post-transcriptional modifications using machine learning3 versions - Latest release: 6 months ago - 5.02 thousand downloads total - 0 stars on GitHub - 1 maintainer
pipeFrame 1.18.0
Pipeline framework for bioinformatics in R3 versions - Latest release: 6 months ago - 2 dependent packages - 10.2 thousand downloads total - 1 stars on GitHub - 1 maintainer
Rcwl 1.18.0
An R interface to the Common Workflow Language3 versions - Latest release: 6 months ago - 2 dependent packages - 9.27 thousand downloads total - 1 maintainer
flowGate 1.2.0
Interactive Cytometry Gating in R3 versions - Latest release: 6 months ago - 1.55 thousand downloads total - 1 maintainer
Top 7.6% on bioconductor.org
3 versions - Latest release: 6 months ago - 1 dependent package - 38.5 thousand downloads total - 1 maintainer
DRIMSeq 1.30.0
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq3 versions - Latest release: 6 months ago - 1 dependent package - 38.5 thousand downloads total - 1 maintainer
nanotatoR 1.18.0
Next generation structural variant annotation and classification3 versions - Latest release: 6 months ago - 6.31 thousand downloads total - 6 stars on GitHub - 1 maintainer
rDGIdb 1.28.0
R Wrapper for DGIdb3 versions - Latest release: 6 months ago - 11.6 thousand downloads total - 1 maintainer
pgca 1.26.0
PGCA: An Algorithm to Link Protein Groups Created from MS/MS Data3 versions - Latest release: 6 months ago - 8.19 thousand downloads total - 1 maintainer
RepViz 1.18.0
Replicate oriented Visualization of a genomic region3 versions - Latest release: 6 months ago - 6.28 thousand downloads total - 1 maintainer
iGC 1.32.0
An integrated analysis package of Gene expression and Copy number alteration3 versions - Latest release: 6 months ago - 11.3 thousand downloads total - 1 stars on GitHub - 1 maintainer
nondetects 2.32.0
Non-detects in qPCR data3 versions - Latest release: 6 months ago - 19.4 thousand downloads total - 1 maintainer
phosphonormalizer 1.26.0
Compensates for the bias introduced by median normalization in3 versions - Latest release: 6 months ago - 9.22 thousand downloads total - 1 maintainer
RcwlPipelines 1.18.1
Bioinformatics pipelines based on Rcwl4 versions - Latest release: about 1 month ago - 1 dependent package - 8 thousand downloads total - 1 maintainer
SCANVIS 1.16.0
SCANVIS - a tool for SCoring, ANnotating and VISualizing splice junctions3 versions - Latest release: 6 months ago - 5.45 thousand downloads total - 1 maintainer
CNVgears 1.10.0
A Framework of Functions to Combine, Analize and Interpret CNVs Calling Results3 versions - Latest release: 6 months ago - 2.64 thousand downloads total - 1 stars on GitHub - 1 maintainer
struct 1.14.1
Statistics in R Using Class-based Templates4 versions - Latest release: 3 months ago - 2 dependent packages - 7.76 thousand downloads total - 1 maintainer
RNAdecay 1.22.2
Maximum Likelihood Decay Modeling of RNA Degradation Data5 versions - Latest release: 3 months ago - 5.73 thousand downloads total - 1 maintainer
GladiaTOX 1.18.0
R Package for Processing High Content Screening data3 versions - Latest release: 6 months ago - 4.98 thousand downloads total - 1 maintainer
MetID 1.20.0
Network-based prioritization of putative metabolite IDs3 versions - Latest release: 6 months ago - 5.66 thousand downloads total - 1 stars on GitHub - 1 maintainer
metaseqR2 1.14.0
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statisti...3 versions - Latest release: 6 months ago - 5.12 thousand downloads total - 1 maintainer
ChIPanalyser 1.24.0
ChIPanalyser: Predicting Transcription Factor Binding Sites3 versions - Latest release: 6 months ago - 8.35 thousand downloads total - 1 maintainer
omicRexposome 1.24.3
Exposome and omic data associatin and integration analysis4 versions - Latest release: 3 months ago - 7.99 thousand downloads total - 1 maintainer
GUIDEseq 1.32.0
GUIDE-seq and PEtag-seq analysis pipeline3 versions - Latest release: 6 months ago - 1 dependent package - 14.3 thousand downloads total - 1 maintainer
sitadela 1.12.0
An R package for the easy provision of simple but complete tab-delimited genomic annotation from ...3 versions - Latest release: 10 days ago - 2.78 thousand downloads total - 0 stars on GitHub - 1 maintainer
netOmics 1.10.0
Multi-Omics (time-course) network-based integration and interpretation3 versions - Latest release: 10 days ago - 2.23 thousand downloads total - 5 stars on GitHub - 1 maintainer
CytoPipeline 1.4.0
Automation and visualization of flow cytometry data analysis pipelines3 versions - Latest release: 14 days ago - 2 dependent packages - 1.79 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 4.3% on bioconductor.org
3 versions - Latest release: 14 days ago - 22 dependent packages - 74.9 thousand downloads total - 127 stars on GitHub - 1 maintainer
plyranges 1.24.0
A fluent interface for manipulating GenomicRanges3 versions - Latest release: 14 days ago - 22 dependent packages - 74.9 thousand downloads total - 127 stars on GitHub - 1 maintainer
Top 4.5% on bioconductor.org
3 versions - Latest release: 14 days ago - 4 dependent packages - 126 thousand downloads total - 1 maintainer
AUCell 1.26.0
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with spe...3 versions - Latest release: 14 days ago - 4 dependent packages - 126 thousand downloads total - 1 maintainer
Top 5.9% on bioconductor.org
3 versions - Latest release: 15 days ago - 3 dependent packages - 204 thousand downloads total - 1 maintainer
systemPipeR 2.10.0
systemPipeR: workflow management and report generation environment3 versions - Latest release: 15 days ago - 3 dependent packages - 204 thousand downloads total - 1 maintainer
qsvaR 1.8.0
Generate Quality Surrogate Variable Analysis for Degradation Correction3 versions - Latest release: 21 days ago - 2.6 thousand downloads total - 0 stars on GitHub - 1 maintainer
RNAmodR.RiboMethSeq 1.18.0
Detection of 2'-O methylations by RiboMethSeq3 versions - Latest release: 22 days ago - 5.17 thousand downloads total - 1 stars on GitHub - 1 maintainer
structToolbox 1.16.0
Data processing & analysis tools for Metabolomics and other omics3 versions - Latest release: 22 days ago - 1 dependent package - 6.13 thousand downloads total - 7 stars on GitHub - 1 maintainer
mobileRNA 1.0.0
mobileRNA: Investigate the RNA mobilome & population-scale changes1 version - Latest release: 23 days ago - 189 downloads total - 1 maintainer
BUSpaRse 1.16.1
kallisto | bustools R utilities3 versions - Latest release: about 2 months ago - 15.3 thousand downloads total - 9 stars on GitHub - 1 maintainer
tRNAscanImport 1.22.0
Importing a tRNAscan-SE result file as GRanges object2 versions - Latest release: 6 months ago - 2 dependent packages - 7.62 thousand downloads total - 2 stars on GitHub - 1 maintainer
RNAmodR 1.16.0
Detection of post-transcriptional modifications in high throughput sequencing data2 versions - Latest release: 6 months ago - 3 dependent packages - 6.54 thousand downloads total - 2 stars on GitHub - 1 maintainer
RNAmodR.AlkAnilineSeq 1.16.0
Detection of m7G, m3C and D modification by AlkAnilineSeq2 versions - Latest release: 6 months ago - 1 dependent package - 5.04 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 7.3% on bioconductor.org
3 versions - Latest release: 5 months ago - 7 dependent packages - 59.6 thousand downloads total - 19 stars on GitHub - 1 maintainer
TCGAutils 1.22.2
TCGA utility functions for data management3 versions - Latest release: 5 months ago - 7 dependent packages - 59.6 thousand downloads total - 19 stars on GitHub - 1 maintainer
easylift 1.0.0
An R package to perform genomic liftover1 version - Latest release: 7 months ago - 623 downloads total - 3 stars on GitHub - 1 maintainer
CytoPipelineGUI 1.0.0
GUI's for visualization of flow cytometry data analysis pipelines1 version - Latest release: 7 months ago - 564 downloads total - 1 maintainer
OGRE 1.6.0
Calculate, visualize and analyse overlap between genomic regions2 versions - Latest release: 6 months ago - 1.77 thousand downloads total - 2 stars on GitHub - 1 maintainer
scruff 1.20.0
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)2 versions - Latest release: 6 months ago - 7.41 thousand downloads total - 8 stars on GitHub - 1 maintainer
Related Keywords
Software
43
Sequencing
17
Visualization
13
ImmunoOncology
13
Preprocessing
12
DataImport
9
RNASeq
9
QualityControl
8
GeneExpression
8
Transcriptomics
6
Normalization
6
DifferentialExpression
6
Coverage
6
Infrastructure
6
bioconductor
5
Alignment
5
ChIPSeq
5
r
5
Transcription
5
BiologicalQuestion
4
MultipleComparison
4
ResearchField
4
AssayDomain
4
Technology
4
StatisticalMethod
3
GeneSetEnrichment
3
GeneRegulation
3
Regression
3
TimeCourse
3
SystemsBiology
3
FlowCytometry
3
AlternativeSplicing
3
Genetics
3
GenomeAssembly
3
rnamodr
3
Annotation
3
FunctionalGenomics
3
rna
3
modifications
3
Proteomics
3
SingleCell
3
Clustering
2
ribomethseq
2
Epigenetics
2
BiomedicalInformatics
2
Network
2
bioconductor-package
2
alkanilineseq
2
ReportWriting
2
ATACSeq
2
GenomicVariation
2
DifferentialSplicing
2
SNP
2
statistics
1
r-package
1
multivariate-analysis
1
metabolomics
1
machine-learning
1
lc-ms
1
dims
1
Metabolomics
1
VariantAnnotation
1
Pharmacogenetics
1
Pharmacogenomics
1
MassSpectrometry
1
rstats
1
qsva
1
umi
1
single-cell
1
scrna-seq
1
bioinformatics
1
Metagenomics
1
ShinyApps
1
GUI
1
utilities
1
tcga
1
trnascan-se
1
trnascan
1
trna
1
structures
1
sequences
1
SmallRNA
1
ExperimentalDesign
1
univariate
1
human
1
PeakDetection
1
ChipOnChip
1
Biological Question
1
CopyNumberVariation
1
ProprietaryPlatforms
1
Microarray
1
qPCR
1
DNASeq
1
CellBiology
1
cnv
1
Bayesian
1
BatchEffect
1
cnv-analysis
1
KEGG
1
ngs-analysis
1