bioconductor.org "WorkflowStep" keyword
scruff 1.28.0
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)7 versions - Latest release: 3 months ago - 14.6 thousand downloads total - 8 stars on GitHub - 1 maintainer
DOtools 1.0.2
Convenient functions to streamline your single cell data analysis workflow2 versions - Latest release: 4 days ago - 672 downloads total - 2 stars on GitHub - 1 maintainer
sitadela 1.18.0
An R package for the easy provision of simple but complete tab-delimited genomic annotation from ...6 versions - Latest release: 3 months ago - 8.28 thousand downloads total - 0 stars on GitHub - 1 maintainer
iGC 1.36.0
An integrated analysis package of Gene expression and Copy number alteration4 versions - Latest release: about 1 year ago - 13.3 thousand downloads total - 1 stars on GitHub - 1 maintainer
RNAmodR.ML 1.24.0
Detecting patterns of post-transcriptional modifications using machine learning6 versions - Latest release: 3 months ago - 11.4 thousand downloads total - 1 stars on GitHub - 1 maintainer
MetMashR 1.4.0
Metabolite Mashing with R4 versions - Latest release: 3 months ago - 2.76 thousand downloads total - 2 stars on GitHub - 1 maintainer
netOmics 1.12.0 removed
Multi-Omics (time-course) network-based integration and interpretation4 versions - Latest release: over 1 year ago - 2.76 thousand downloads total - 14 stars on GitHub - 1 maintainer
pipeFrame 1.26.0
Pipeline framework for bioinformatics in R6 versions - Latest release: 3 months ago - 2 dependent packages - 17.7 thousand downloads total - 1 stars on GitHub - 1 maintainer
scoup 1.4.0
Simulate Codons with Darwinian Selection Modelled as an OU Process3 versions - Latest release: 3 months ago - 3.19 thousand downloads total - 0 stars on GitHub - 1 maintainer
structToolbox 1.22.0
Data processing & analysis tools for Metabolomics and other omics9 versions - Latest release: 2 months ago - 1 dependent package - 14.2 thousand downloads total - 10 stars on GitHub - 1 maintainer
CytoPipelineGUI 1.8.0
GUI's for visualization of flow cytometry data analysis pipelines5 versions - Latest release: 3 months ago - 5.52 thousand downloads total - 2 stars on GitHub - 1 maintainer
GUIDEseq 1.40.0
GUIDE-seq and PEtag-seq analysis pipeline6 versions - Latest release: 3 months ago - 1 dependent package - 22.5 thousand downloads total - 1 maintainer
GladiaTOX 1.26.0
R Package for Processing High Content Screening data8 versions - Latest release: 3 months ago - 11.5 thousand downloads total - 0 stars on GitHub - 1 maintainer
RNAmodR.RiboMethSeq 1.24.0
Detection of 2'-O methylations by RiboMethSeq6 versions - Latest release: 3 months ago - 11.3 thousand downloads total - 1 stars on GitHub - 1 maintainer
metaseqR2 1.22.0
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statisti...6 versions - Latest release: 3 months ago - 12.2 thousand downloads total - 1 maintainer
struct 1.22.1
Statistics in R Using Class-based Templates9 versions - Latest release: 2 months ago - 2 dependent packages - 18.2 thousand downloads total - 1 maintainer
qsvaR 1.14.0
Generate Quality Surrogate Variable Analysis for Degradation Correction6 versions - Latest release: 4 months ago - 9.49 thousand downloads total - 0 stars on GitHub - 1 maintainer
omicRexposome 1.32.0
Exposome and omic data associatin and integration analysis7 versions - Latest release: 4 months ago - 15.2 thousand downloads total - 1 maintainer
pgca 1.34.0
PGCA: An Algorithm to Link Protein Groups Created from MS/MS Data6 versions - Latest release: 3 months ago - 13.6 thousand downloads total - 1 maintainer
Top 4.5% on bioconductor.org
7 versions - Latest release: 3 months ago - 4 dependent packages - 242 thousand downloads total - 1 maintainer
AUCell 1.32.0
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with spe...7 versions - Latest release: 3 months ago - 4 dependent packages - 242 thousand downloads total - 1 maintainer
Top 7.6% on bioconductor.org
6 versions - Latest release: 3 months ago - 1 dependent package - 64.9 thousand downloads total - 1 maintainer
DRIMSeq 1.38.0
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq6 versions - Latest release: 3 months ago - 1 dependent package - 64.9 thousand downloads total - 1 maintainer
peakCombiner 1.0.0
The R package to curate and merge enriched genomic regions into consensus peak sets1 version - Latest release: 4 months ago - 701 downloads total - 1 maintainer
OGRE 1.14.0
Calculate, visualize and analyse overlap between genomic regions6 versions - Latest release: 3 months ago - 7.4 thousand downloads total - 2 stars on GitHub - 1 maintainer
mobileRNA 1.6.1
mobileRNA: Investigate the RNA mobilome & population-scale changes9 versions - Latest release: 26 days ago - 4.93 thousand downloads total - 1 maintainer
Top 7.3% on bioconductor.org
8 versions - Latest release: 2 months ago - 7 dependent packages - 182 thousand downloads total - 19 stars on GitHub - 1 maintainer
TCGAutils 1.30.2
TCGA utility functions for data management8 versions - Latest release: 2 months ago - 7 dependent packages - 182 thousand downloads total - 19 stars on GitHub - 1 maintainer
RNAdecay 1.30.0
Maximum Likelihood Decay Modeling of RNA Degradation Data8 versions - Latest release: 3 months ago - 11.3 thousand downloads total - 1 maintainer
CytoPipeline 1.10.0
Automation and visualization of flow cytometry data analysis pipelines6 versions - Latest release: 3 months ago - 2 dependent packages - 7.34 thousand downloads total - 6 stars on GitHub - 1 maintainer
RcwlPipelines 1.26.0
Bioinformatics pipelines based on Rcwl7 versions - Latest release: 3 months ago - 1 dependent package - 13.6 thousand downloads total - 1 maintainer
phosphonormalizer 1.34.0
Compensates for the bias introduced by median normalization in6 versions - Latest release: 3 months ago - 14.7 thousand downloads total - 1 maintainer
Top 4.3% on bioconductor.org
6 versions - Latest release: 3 months ago - 22 dependent packages - 150 thousand downloads total - 127 stars on GitHub - 1 maintainer
plyranges 1.30.1
A fluent interface for manipulating GenomicRanges6 versions - Latest release: 3 months ago - 22 dependent packages - 150 thousand downloads total - 127 stars on GitHub - 1 maintainer
ChIPanalyser 1.32.0
ChIPanalyser: Predicting Transcription Factor Binding Sites6 versions - Latest release: 3 months ago - 15.7 thousand downloads total - 1 maintainer
BUSpaRse 1.24.0
kallisto | bustools R utilities9 versions - Latest release: 3 months ago - 27.4 thousand downloads total - 10 stars on GitHub - 1 maintainer
RepViz 1.25.0
Replicate oriented Visualization of a genomic region6 versions - Latest release: 3 months ago - 11.4 thousand downloads total - 1 maintainer
Rcwl 1.26.0
An R interface to the Common Workflow Language6 versions - Latest release: 3 months ago - 2 dependent packages - 16.5 thousand downloads total - 1 maintainer
Top 5.9% on bioconductor.org
8 versions - Latest release: 26 days ago - 3 dependent packages - 276 thousand downloads total - 54 stars on GitHub - 1 maintainer
systemPipeR 2.16.3
systemPipeR: Workflow Environment for Data Analysis and Report Generation8 versions - Latest release: 26 days ago - 3 dependent packages - 276 thousand downloads total - 54 stars on GitHub - 1 maintainer
SCANVIS 1.24.0
SCANVIS - a tool for SCoring, ANnotating and VISualizing splice junctions6 versions - Latest release: 3 months ago - 11.5 thousand downloads total - 1 maintainer
tRNAscanImport 1.30.0
Importing a tRNAscan-SE result file as GRanges object6 versions - Latest release: 3 months ago - 2 dependent packages - 14.4 thousand downloads total - 2 stars on GitHub - 1 maintainer
RNAmodR 1.24.0
Detection of post-transcriptional modifications in high throughput sequencing data6 versions - Latest release: 3 months ago - 3 dependent packages - 12.9 thousand downloads total - 3 stars on GitHub - 1 maintainer
mina 1.18.0
Microbial community dIversity and Network Analysis6 versions - Latest release: 3 months ago - 7.93 thousand downloads total - 5 stars on GitHub - 1 maintainer
nondetects 2.40.0
Non-detects in qPCR data7 versions - Latest release: 3 months ago - 24.3 thousand downloads total - 1 maintainer
RNAmodR.AlkAnilineSeq 1.24.0
Detection of m7G, m3C and D modification by AlkAnilineSeq6 versions - Latest release: 3 months ago - 1 dependent package - 11 thousand downloads total - 2 stars on GitHub - 1 maintainer
flowGate 1.10.0
Interactive Cytometry Gating in R6 versions - Latest release: 3 months ago - 7.1 thousand downloads total - 1 maintainer
MetID 1.28.0
Network-based prioritization of putative metabolite IDs6 versions - Latest release: 3 months ago - 11.7 thousand downloads total - 1 stars on GitHub - 1 maintainer
easylift 1.8.0
An R package to perform genomic liftover5 versions - Latest release: 3 months ago - 5.52 thousand downloads total - 8 stars on GitHub - 1 maintainer
nanotatoR 1.22.0 removed
Next generation structural variant annotation and classification4 versions - Latest release: over 1 year ago - 7.13 thousand downloads total - 6 stars on GitHub - 1 maintainer
rDGIdb 1.31.0 removed
R Wrapper for DGIdb4 versions - Latest release: over 1 year ago - 13.6 thousand downloads total - 1 maintainer
CNVgears 1.12.0 removed
A Framework of Functions to Combine, Analize and Interpret CNVs Calling Results3 versions - Latest release: almost 2 years ago - 2.99 thousand downloads total - 1 stars on GitHub - 1 maintainer
Related Keywords
Software
47
Sequencing
18
Visualization
14
ImmunoOncology
13
Preprocessing
13
RNASeq
10
DataImport
10
QualityControl
9
GeneExpression
9
Coverage
6
Normalization
6
Infrastructure
6
DifferentialExpression
6
Transcriptomics
6
Alignment
6
bioconductor
5
r
5
ChIPSeq
5
ResearchField
5
Transcription
5
SingleCell
4
StatisticalMethod
4
Technology
4
MultipleComparison
4
Genetics
4
BiologicalQuestion
4
AssayDomain
4
Annotation
4
FlowCytometry
3
GeneRegulation
3
Clustering
3
modifications
3
AlternativeSplicing
3
rna
3
TimeCourse
3
rnamodr
3
GeneSetEnrichment
3
GenomeAssembly
3
FunctionalGenomics
3
Regression
3
SystemsBiology
3
Proteomics
3
Epigenetics
2
DifferentialSplicing
2
ATACSeq
2
ChipOnChip
2
ribomethseq
2
alkanilineseq
2
ReportWriting
2
SNP
2
Metabolomics
2
BiomedicalInformatics
2
Network
2
KEGG
2
GenomicVariation
2
SequenceMatching
2
bioconductor-package
2
snp-array
1
grammar
1
genomic-data-analysis
1
genomes
1
data-manipulation
1
biconductor
1
DataRepresentation
1
DNASeq
1
utilities
1
tcga
1
SmallRNA
1
ExperimentalDesign
1
Metagenomics
1
single-cell
1
ngs-analysis
1
cnv-analysis
1
cnv
1
Pharmacogenomics
1
Pharmacogenetics
1
VariantAnnotation
1
qPCR
1
umi
1
trnascan-se
1
trnascan
1
trna
1
structures
1
sequences
1
WorkflowManagement
1
RiboSeq
1
MethylSeq
1
PeakDetection
1
metabolomics
1
multivariate-analysis
1
r-package
1
statistics
1
univariate
1
machine-learning
1
GUI
1
ShinyApps
1
CRISPR
1
lc-ms
1
dims
1
MathematicalBiology
1