bioconductor.org "WorkflowStep" keyword
MetID 1.30.0
Network-based prioritization of putative metabolite IDs7 versions - Latest release: 1 day ago - 13.2 thousand downloads total - 1 stars on GitHub - 1 maintainer
RepViz 1.28.0
Replicate oriented Visualization of a genomic region8 versions - Latest release: 1 day ago - 13 thousand downloads total - 1 maintainer
RNAdecay 1.32.0
Maximum Likelihood Decay Modeling of RNA Degradation Data9 versions - Latest release: 2 days ago - 12.9 thousand downloads total - 1 maintainer
metabom8 1.0.0
A High-Performance R Package for Metabolomics Modeling and Analysis1 version - Latest release: 12 days ago - 231 downloads total - 1 maintainer
Top 5.9% on bioconductor.org
10 versions - Latest release: 3 days ago - 3 dependent packages - 288 thousand downloads total - 54 stars on GitHub - 1 maintainer
systemPipeR 2.18.0
systemPipeR: A Multipurpose Workflow Management System for Reproducible Data Analysis10 versions - Latest release: 3 days ago - 3 dependent packages - 288 thousand downloads total - 54 stars on GitHub - 1 maintainer
Top 4.3% on bioconductor.org
7 versions - Latest release: 3 days ago - 22 dependent packages - 156 thousand downloads total - 127 stars on GitHub - 1 maintainer
plyranges 1.32.0
A fluent interface for manipulating GenomicRanges7 versions - Latest release: 3 days ago - 22 dependent packages - 156 thousand downloads total - 127 stars on GitHub - 1 maintainer
pgca 1.36.0
PGCA: An Algorithm to Link Protein Groups Created from MS/MS Data7 versions - Latest release: 3 days ago - 15.1 thousand downloads total - 1 maintainer
SCANVIS 1.26.0
SCANVIS - a tool for SCoring, ANnotating and VISualizing splice junctions7 versions - Latest release: 3 days ago - 13 thousand downloads total - 1 maintainer
ChIPanalyser 1.34.0
ChIPanalyser: Predicting Transcription Factor Binding Sites7 versions - Latest release: 4 days ago - 17.9 thousand downloads total - 1 maintainer
nondetects 2.42.0
Non-detects in qPCR data8 versions - Latest release: 4 days ago - 26.2 thousand downloads total - 1 maintainer
mina 1.20.0
Microbial community dIversity and Network Analysis7 versions - Latest release: 4 days ago - 9.3 thousand downloads total - 5 stars on GitHub - 1 maintainer
sitadela 1.20.0
An R package for the easy provision of simple but complete tab-delimited genomic annotation from ...7 versions - Latest release: 5 days ago - 9.86 thousand downloads total - 0 stars on GitHub - 1 maintainer
RNAmodR 1.26.0
Detection of post-transcriptional modifications in high throughput sequencing data7 versions - Latest release: 6 days ago - 3 dependent packages - 14.9 thousand downloads total - 3 stars on GitHub - 1 maintainer
CytoPipeline 1.12.0
Automation and visualization of flow cytometry data analysis pipelines7 versions - Latest release: 6 days ago - 2 dependent packages - 8.79 thousand downloads total - 6 stars on GitHub - 1 maintainer
easylift 1.10.0
An R package to perform genomic liftover6 versions - Latest release: 9 days ago - 6.76 thousand downloads total - 8 stars on GitHub - 1 maintainer
DOtools 1.2.0
Convenient functions to streamline your single cell data analysis workflow3 versions - Latest release: 10 days ago - 1.35 thousand downloads total - 2 stars on GitHub - 1 maintainer
RNAmodR.ML 1.26.0
Detecting patterns of post-transcriptional modifications using machine learning7 versions - Latest release: 11 days ago - 12.7 thousand downloads total - 1 stars on GitHub - 1 maintainer
queeems 1.0.0
Quantify the Extent of Evolutionary Evidence in Molecular Sequences1 version - Latest release: 12 days ago - 18 downloads total - 1 maintainer
tidyexposomics 1.0.0
Integrated Exposure-Omics Analysis Powered by Tidy Principles1 version - Latest release: 12 days ago - 545 downloads total - 1 maintainer
SpatialArtifacts 1.0.0
Identification and Classification of Spatial Artifacts in Visium and Visium HD Data1 version - Latest release: 12 days ago - 106 downloads total - 1 maintainer
imageTCGAutils 1.0.0
Utility functions for working with histopathology images1 version - Latest release: 12 days ago - 106 downloads total - 1 maintainer
asuri 1.0.0
Analysis of SUrvival and RIsk prediction in patients based on gene signatures1 version - Latest release: 12 days ago - 798 downloads total - 1 maintainer
MetMashR 1.4.0
Metabolite Mashing with R4 versions - Latest release: 6 months ago - 3.38 thousand downloads total - 2 stars on GitHub - 1 maintainer
pipeFrame 1.26.0
Pipeline framework for bioinformatics in R6 versions - Latest release: 5 months ago - 2 dependent packages - 18.8 thousand downloads total - 1 stars on GitHub - 1 maintainer
metaseqR2 1.22.4
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statisti...8 versions - Latest release: 18 days ago - 13.6 thousand downloads total - 1 maintainer
qsvaR 1.14.0
Generate Quality Surrogate Variable Analysis for Degradation Correction6 versions - Latest release: 6 months ago - 10.4 thousand downloads total - 0 stars on GitHub - 1 maintainer
struct 1.22.1
Statistics in R Using Class-based Templates9 versions - Latest release: 4 months ago - 2 dependent packages - 19.4 thousand downloads total - 1 maintainer
omicRexposome 1.32.0
Exposome and omic data associatin and integration analysis7 versions - Latest release: 6 months ago - 16.6 thousand downloads total - 1 maintainer
structToolbox 1.22.0
Data processing & analysis tools for Metabolomics and other omics9 versions - Latest release: 5 months ago - 1 dependent package - 15.2 thousand downloads total - 10 stars on GitHub - 1 maintainer
CytoPipelineGUI 1.8.0
GUI's for visualization of flow cytometry data analysis pipelines5 versions - Latest release: 6 months ago - 6.22 thousand downloads total - 2 stars on GitHub - 1 maintainer
GladiaTOX 1.26.0
R Package for Processing High Content Screening data8 versions - Latest release: 6 months ago - 12.5 thousand downloads total - 0 stars on GitHub - 1 maintainer
GUIDEseq 1.40.0
GUIDE-seq and PEtag-seq analysis pipeline6 versions - Latest release: 5 months ago - 1 dependent package - 24.2 thousand downloads total - 1 maintainer
RNAmodR.RiboMethSeq 1.24.0
Detection of 2'-O methylations by RiboMethSeq6 versions - Latest release: 5 months ago - 12.3 thousand downloads total - 1 stars on GitHub - 1 maintainer
scoup 1.4.0
Simulate Codons with Darwinian Selection Modelled as an OU Process3 versions - Latest release: 6 months ago - 3.82 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 7.6% on bioconductor.org
6 versions - Latest release: 6 months ago - 1 dependent package - 67.2 thousand downloads total - 1 maintainer
DRIMSeq 1.38.0
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq6 versions - Latest release: 6 months ago - 1 dependent package - 67.2 thousand downloads total - 1 maintainer
Top 7.3% on bioconductor.org
9 versions - Latest release: about 1 month ago - 7 dependent packages - 187 thousand downloads total - 19 stars on GitHub - 1 maintainer
TCGAutils 1.30.3
TCGA utility functions for data management9 versions - Latest release: about 1 month ago - 7 dependent packages - 187 thousand downloads total - 19 stars on GitHub - 1 maintainer
mobileRNA 1.6.2
mobileRNA: Investigate the RNA mobilome & population-scale changes10 versions - Latest release: 2 months ago - 5.89 thousand downloads total - 1 maintainer
Top 4.5% on bioconductor.org
7 versions - Latest release: 5 months ago - 4 dependent packages - 253 thousand downloads total - 1 maintainer
AUCell 1.32.0
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with spe...7 versions - Latest release: 5 months ago - 4 dependent packages - 253 thousand downloads total - 1 maintainer
RcwlPipelines 1.26.0
Bioinformatics pipelines based on Rcwl7 versions - Latest release: 5 months ago - 1 dependent package - 14.6 thousand downloads total - 1 maintainer
tRNAscanImport 1.30.0
Importing a tRNAscan-SE result file as GRanges object6 versions - Latest release: 5 months ago - 2 dependent packages - 15.8 thousand downloads total - 2 stars on GitHub - 1 maintainer
Rcwl 1.26.0
An R interface to the Common Workflow Language6 versions - Latest release: 5 months ago - 2 dependent packages - 17.5 thousand downloads total - 1 maintainer
peakCombiner 1.0.0
The R package to curate and merge enriched genomic regions into consensus peak sets1 version - Latest release: 6 months ago - 1.21 thousand downloads total - 1 maintainer
flowGate 1.10.0
Interactive Cytometry Gating in R6 versions - Latest release: 5 months ago - 8.15 thousand downloads total - 1 maintainer
phosphonormalizer 1.34.0
Compensates for the bias introduced by median normalization in6 versions - Latest release: 5 months ago - 15.8 thousand downloads total - 1 maintainer
OGRE 1.14.0
Calculate, visualize and analyse overlap between genomic regions6 versions - Latest release: 5 months ago - 8.29 thousand downloads total - 2 stars on GitHub - 1 maintainer
RNAmodR.AlkAnilineSeq 1.24.0
Detection of m7G, m3C and D modification by AlkAnilineSeq6 versions - Latest release: 5 months ago - 1 dependent package - 12.1 thousand downloads total - 2 stars on GitHub - 1 maintainer
BUSpaRse 1.24.0
kallisto | bustools R utilities9 versions - Latest release: 6 months ago - 28.7 thousand downloads total - 11 stars on GitHub - 1 maintainer
iGC 1.36.0
An integrated analysis package of Gene expression and Copy number alteration4 versions - Latest release: over 1 year ago - 13.3 thousand downloads total - 1 stars on GitHub - 1 maintainer
scruff 1.28.0
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)7 versions - Latest release: 6 months ago - 15.2 thousand downloads total - 8 stars on GitHub - 1 maintainer
netOmics 1.12.0 removed
Multi-Omics (time-course) network-based integration and interpretation4 versions - Latest release: over 1 year ago - 2.76 thousand downloads total - 14 stars on GitHub - 1 maintainer
nanotatoR 1.22.0 removed
Next generation structural variant annotation and classification4 versions - Latest release: over 1 year ago - 7.13 thousand downloads total - 6 stars on GitHub - 1 maintainer
rDGIdb 1.31.0 removed
R Wrapper for DGIdb4 versions - Latest release: over 1 year ago - 13.6 thousand downloads total - 1 maintainer
CNVgears 1.12.0 removed
A Framework of Functions to Combine, Analize and Interpret CNVs Calling Results3 versions - Latest release: almost 2 years ago - 2.99 thousand downloads total - 1 stars on GitHub - 1 maintainer
Related Keywords
Software
53
Sequencing
19
Preprocessing
15
Visualization
15
DataImport
13
ImmunoOncology
13
GeneExpression
11
QualityControl
11
RNASeq
10
Alignment
8
Transcriptomics
8
DifferentialExpression
8
StatisticalMethod
7
Coverage
6
ResearchField
6
Normalization
6
MultipleComparison
6
Infrastructure
6
Genetics
5
ChIPSeq
5
r
5
bioconductor
5
Regression
5
Transcription
5
Annotation
4
Proteomics
4
SingleCell
4
Technology
4
BiologicalQuestion
4
AssayDomain
4
FlowCytometry
3
GenomeAssembly
3
rnamodr
3
Clustering
3
rna
3
Classification
3
modifications
3
Epigenetics
3
SystemsBiology
3
FunctionalGenomics
3
AlternativeSplicing
3
SequenceMatching
3
GeneRegulation
3
TimeCourse
3
Metabolomics
3
GeneSetEnrichment
3
GenomicVariation
2
Bayesian
2
ribomethseq
2
ATACSeq
2
ReportWriting
2
MathematicalBiology
2
alkanilineseq
2
SNP
2
DifferentialMethylation
2
BiomedicalInformatics
2
Network
2
GraphAndNetwork
2
bioconductor-package
2
KEGG
2
ChipOnChip
2
DifferentialSplicing
2
Microarray
2
structures
1
trna
1
snp-array
1
sequences
1
DNASeq
1
SmallRNA
1
ExperimentalDesign
1
utilities
1
tcga
1
ComparativeGenomics
1
CRISPR
1
ShinyApps
1
GUI
1
univariate
1
statistics
1
ngs-analysis
1
cnv-analysis
1
cnv
1
Pharmacogenomics
1
Pharmacogenetics
1
VariantAnnotation
1
NetworkInference
1
umi
1
single-cell
1
scrna-seq
1
bioinformatics
1
CopyNumberVariation
1
Biological Question
1
Metagenomics
1
trnascan-se
1
trnascan
1
genomic-data-analysis
1
grammar
1
MassSpectrometry
1
genomes
1
data-manipulation
1
PeakDetection
1