bioconductor.org "WorkflowStep" keyword
View the packages on the bioconductor.org package registry that are tagged with the "WorkflowStep" keyword.
Top 5.9% on bioconductor.org
6 versions - Latest release: 29 days ago - 3 dependent packages - 239 thousand downloads total - 53 stars on GitHub - 1 maintainer
systemPipeR 2.14.2
systemPipeR: Workflow Environment for Data Analysis and Report Generation6 versions - Latest release: 29 days ago - 3 dependent packages - 239 thousand downloads total - 53 stars on GitHub - 1 maintainer
struct 1.20.1
Statistics in R Using Class-based Templates6 versions - Latest release: 2 months ago - 2 dependent packages - 13.3 thousand downloads total - 1 maintainer
RNAmodR.RiboMethSeq 1.22.0
Detection of 2'-O methylations by RiboMethSeq5 versions - Latest release: 3 months ago - 9.29 thousand downloads total - 1 stars on GitHub - 1 maintainer
CytoPipelineGUI 1.6.0
GUI's for visualization of flow cytometry data analysis pipelines4 versions - Latest release: 3 months ago - 3.96 thousand downloads total - 2 stars on GitHub - 1 maintainer
easylift 1.6.0
An R package to perform genomic liftover4 versions - Latest release: 2 months ago - 4.04 thousand downloads total - 5 stars on GitHub - 1 maintainer
CytoPipeline 1.8.0
Automation and visualization of flow cytometry data analysis pipelines5 versions - Latest release: 3 months ago - 2 dependent packages - 5.66 thousand downloads total - 5 stars on GitHub - 1 maintainer
OGRE 1.12.0
Calculate, visualize and analyse overlap between genomic regions5 versions - Latest release: 3 months ago - 5.82 thousand downloads total - 2 stars on GitHub - 1 maintainer
Rcwl 1.24.0
An R interface to the Common Workflow Language5 versions - Latest release: 3 months ago - 2 dependent packages - 13.2 thousand downloads total - 1 maintainer
mina 1.16.0
Microbial community dIversity and Network Analysis5 versions - Latest release: 2 months ago - 6.16 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 7.3% on bioconductor.org
6 versions - Latest release: 3 months ago - 7 dependent packages - 149 thousand downloads total - 19 stars on GitHub - 1 maintainer
TCGAutils 1.28.0
TCGA utility functions for data management6 versions - Latest release: 3 months ago - 7 dependent packages - 149 thousand downloads total - 19 stars on GitHub - 1 maintainer
ChIPanalyser 1.30.0
ChIPanalyser: Predicting Transcription Factor Binding Sites5 versions - Latest release: 3 months ago - 13.1 thousand downloads total - 1 maintainer
Top 7.6% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 47.9 thousand downloads total - 1 maintainer
DRIMSeq 1.36.0
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq5 versions - Latest release: 3 months ago - 1 dependent package - 47.9 thousand downloads total - 1 maintainer
qsvaR 1.12.0
Generate Quality Surrogate Variable Analysis for Degradation Correction5 versions - Latest release: 3 months ago - 7.57 thousand downloads total - 0 stars on GitHub - 1 maintainer
scruff 1.26.0
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)5 versions - Latest release: 3 months ago - 11.9 thousand downloads total - 8 stars on GitHub - 1 maintainer
MetID 1.26.0
Network-based prioritization of putative metabolite IDs5 versions - Latest release: 3 months ago - 9.55 thousand downloads total - 1 stars on GitHub - 1 maintainer
scoup 1.2.0
Simulate Codons with Darwinian Selection Modelled as an OU Process2 versions - Latest release: 3 months ago - 1.63 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 4.3% on bioconductor.org
5 versions - Latest release: 3 months ago - 22 dependent packages - 102 thousand downloads total - 127 stars on GitHub - 1 maintainer
plyranges 1.28.0
A fluent interface for manipulating GenomicRanges5 versions - Latest release: 3 months ago - 22 dependent packages - 102 thousand downloads total - 127 stars on GitHub - 1 maintainer
sitadela 1.16.0
An R package for the easy provision of simple but complete tab-delimited genomic annotation from ...5 versions - Latest release: 3 months ago - 6.11 thousand downloads total - 0 stars on GitHub - 1 maintainer
metaseqR2 1.20.0
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statisti...5 versions - Latest release: 3 months ago - 9.37 thousand downloads total - 1 maintainer
RNAdecay 1.28.0
Maximum Likelihood Decay Modeling of RNA Degradation Data7 versions - Latest release: 3 months ago - 9.36 thousand downloads total - 1 maintainer
pgca 1.32.0
PGCA: An Algorithm to Link Protein Groups Created from MS/MS Data5 versions - Latest release: 3 months ago - 11.7 thousand downloads total - 1 maintainer
phosphonormalizer 1.32.0
Compensates for the bias introduced by median normalization in5 versions - Latest release: 3 months ago - 12.7 thousand downloads total - 1 maintainer
RcwlPipelines 1.24.0
Bioinformatics pipelines based on Rcwl6 versions - Latest release: 3 months ago - 1 dependent package - 11.7 thousand downloads total - 1 maintainer
GUIDEseq 1.38.0
GUIDE-seq and PEtag-seq analysis pipeline5 versions - Latest release: 3 months ago - 1 dependent package - 18.8 thousand downloads total - 1 maintainer
mobileRNA 1.4.0
mobileRNA: Investigate the RNA mobilome & population-scale changes7 versions - Latest release: 3 months ago - 3.25 thousand downloads total - 1 maintainer
GladiaTOX 1.24.0
R Package for Processing High Content Screening data5 versions - Latest release: 3 months ago - 8.67 thousand downloads total - 1 maintainer
nondetects 2.38.1
Non-detects in qPCR data6 versions - Latest release: about 2 months ago - 21.4 thousand downloads total - 1 maintainer
Top 4.5% on bioconductor.org
6 versions - Latest release: 2 months ago - 4 dependent packages - 184 thousand downloads total - 1 maintainer
AUCell 1.30.1
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with spe...6 versions - Latest release: 2 months ago - 4 dependent packages - 184 thousand downloads total - 1 maintainer
structToolbox 1.20.0
Data processing & analysis tools for Metabolomics and other omics7 versions - Latest release: 3 months ago - 1 dependent package - 11.3 thousand downloads total - 10 stars on GitHub - 1 maintainer
pipeFrame 1.24.0
Pipeline framework for bioinformatics in R5 versions - Latest release: 3 months ago - 2 dependent packages - 14.8 thousand downloads total - 1 stars on GitHub - 1 maintainer
omicRexposome 1.30.0
Exposome and omic data associatin and integration analysis6 versions - Latest release: 3 months ago - 12.6 thousand downloads total - 1 maintainer
flowGate 1.8.0
Interactive Cytometry Gating in R5 versions - Latest release: 3 months ago - 5.17 thousand downloads total - 1 maintainer
MetMashR 1.2.0
Metabolite Mashing with R2 versions - Latest release: 3 months ago - 1.21 thousand downloads total - 2 stars on GitHub - 1 maintainer
RNAmodR.ML 1.22.0
Detecting patterns of post-transcriptional modifications using machine learning5 versions - Latest release: 2 months ago - 8.79 thousand downloads total - 1 stars on GitHub - 1 maintainer
SCANVIS 1.22.0
SCANVIS - a tool for SCoring, ANnotating and VISualizing splice junctions5 versions - Latest release: 3 months ago - 9.24 thousand downloads total - 1 maintainer
RepViz 1.24.0
Replicate oriented Visualization of a genomic region5 versions - Latest release: 3 months ago - 9.78 thousand downloads total - 1 maintainer
RNAmodR.AlkAnilineSeq 1.22.0
Detection of m7G, m3C and D modification by AlkAnilineSeq5 versions - Latest release: 3 months ago - 1 dependent package - 8.93 thousand downloads total - 2 stars on GitHub - 1 maintainer
RNAmodR 1.22.0
Detection of post-transcriptional modifications in high throughput sequencing data5 versions - Latest release: 3 months ago - 3 dependent packages - 10.5 thousand downloads total - 3 stars on GitHub - 1 maintainer
tRNAscanImport 1.28.0
Importing a tRNAscan-SE result file as GRanges object5 versions - Latest release: 2 months ago - 2 dependent packages - 11.9 thousand downloads total - 2 stars on GitHub - 1 maintainer
BUSpaRse 1.22.0
kallisto | bustools R utilities7 versions - Latest release: 3 months ago - 21.4 thousand downloads total - 9 stars on GitHub - 1 maintainer
nanotatoR 1.22.0 removed
Next generation structural variant annotation and classification4 versions - Latest release: 9 months ago - 7.13 thousand downloads total - 6 stars on GitHub - 1 maintainer
netOmics 1.12.0 removed
Multi-Omics (time-course) network-based integration and interpretation4 versions - Latest release: 8 months ago - 2.76 thousand downloads total - 8 stars on GitHub - 1 maintainer
rDGIdb 1.31.0 removed
R Wrapper for DGIdb4 versions - Latest release: 8 months ago - 13.6 thousand downloads total - 1 maintainer
iGC 1.36.0
An integrated analysis package of Gene expression and Copy number alteration4 versions - Latest release: 8 months ago - 13.3 thousand downloads total - 1 stars on GitHub - 1 maintainer
CNVgears 1.12.0 removed
A Framework of Functions to Combine, Analize and Interpret CNVs Calling Results3 versions - Latest release: about 1 year ago - 2.99 thousand downloads total - 1 stars on GitHub - 1 maintainer
Related Keywords
Software
45
Sequencing
18
Visualization
13
ImmunoOncology
13
Preprocessing
12
DataImport
10
RNASeq
9
GeneExpression
8
QualityControl
8
DifferentialExpression
6
Normalization
6
Infrastructure
6
Transcriptomics
6
Coverage
6
Alignment
6
ResearchField
5
bioconductor
5
ChIPSeq
5
r
5
Transcription
5
AssayDomain
4
Technology
4
StatisticalMethod
4
MultipleComparison
4
BiologicalQuestion
4
Genetics
4
Proteomics
3
GeneRegulation
3
TimeCourse
3
Regression
3
GeneSetEnrichment
3
SystemsBiology
3
FunctionalGenomics
3
SingleCell
3
modifications
3
AlternativeSplicing
3
rna
3
FlowCytometry
3
Annotation
3
GenomeAssembly
3
rnamodr
3
Network
2
KEGG
2
ReportWriting
2
ATACSeq
2
BiomedicalInformatics
2
alkanilineseq
2
bioconductor-package
2
Metabolomics
2
Clustering
2
Epigenetics
2
GenomicVariation
2
SNP
2
DifferentialSplicing
2
ribomethseq
2
SequenceMatching
2
machine-learning
1
metabolomics
1
multivariate-analysis
1
snp-array
1
lc-ms
1
dims
1
qPCR
1
SmallRNA
1
ExperimentalDesign
1
CRISPR
1
Metagenomics
1
ngs-analysis
1
cnv-analysis
1
cnv
1
Microarray
1
CopyNumberVariation
1
Biological Question
1
Pharmacogenomics
1
Pharmacogenetics
1
NetworkInference
1
GraphAndNetwork
1
VariantAnnotation
1
trnascan-se
1
trnascan
1
trna
1
structures
1
sequences
1
DifferentialMethylation
1
univariate
1
statistics
1
r-package
1
MethylSeq
1
umi
1
single-cell
1
scrna-seq
1
bioinformatics
1
RiboSeq
1
rstats
1
qsva
1
human
1
degradation
1
brain
1
WorkflowManagement
1
tcga
1