bioconductor.org "mRNAMicroarray" keyword
Top 0.3% on bioconductor.org
16 versions - Latest release: 4 months ago - 322 dependent packages - 6.97 million downloads total - 1 maintainer
limma 3.66.0
Linear Models for Microarray and Omics Data16 versions - Latest release: 4 months ago - 322 dependent packages - 6.97 million downloads total - 1 maintainer
NanoStringNCTools 1.18.0
NanoString nCounter Tools9 versions - Latest release: 3 months ago - 2 dependent packages - 32.6 thousand downloads total - 1 maintainer
roastgsa 1.8.0
Rotation based gene set analysis5 versions - Latest release: 3 months ago - 5.83 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 5.3% on bioconductor.org
6 versions - Latest release: 3 months ago - 1 dependent package - 56.5 thousand downloads total - 1 maintainer
puma 3.52.0
Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and ex...6 versions - Latest release: 3 months ago - 1 dependent package - 56.5 thousand downloads total - 1 maintainer
EventPointer 3.18.0
An effective identification of alternative splicing events using junction arrays and RNA-Seq data6 versions - Latest release: 3 months ago - 19.3 thousand downloads total - 4 stars on GitHub - 1 maintainer
CEMiTool 1.34.0
Co-expression Modules identification Tool8 versions - Latest release: 3 months ago - 40.5 thousand downloads total - 1 maintainer
sigFeature 1.28.0
sigFeature: Significant feature selection using SVM-RFE & t-statistic6 versions - Latest release: 4 months ago - 24.7 thousand downloads total - 1 maintainer
GeomxTools 3.14.0
NanoString GeoMx Tools9 versions - Latest release: 4 months ago - 3 dependent packages - 35.3 thousand downloads total - 1 maintainer
Top 5.4% on bioconductor.org
6 versions - Latest release: 3 months ago - 58 thousand downloads total - 1 maintainer
limmaGUI 1.86.0
GUI for limma Package With Two Color Microarrays6 versions - Latest release: 3 months ago - 58 thousand downloads total - 1 maintainer
acde 1.40.0
Artificial Components Detection of Differentially Expressed Genes6 versions - Latest release: 3 months ago - 24.8 thousand downloads total - 1 maintainer
AMARETTO 1.26.0
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis an...6 versions - Latest release: 4 months ago - 17.2 thousand downloads total - 1 maintainer
Top 4.8% on bioconductor.org
6 versions - Latest release: 3 months ago - 78.5 thousand downloads total - 1 maintainer
affylmGUI 1.84.0
GUI for limma Package with Affymetrix Microarrays6 versions - Latest release: 3 months ago - 78.5 thousand downloads total - 1 maintainer
iNETgrate 1.8.0
Integrates DNA methylation data with gene expression in a single gene network6 versions - Latest release: about 1 month ago - 5.72 thousand downloads total - 65 stars on GitHub - 1 maintainer
topconfects 1.26.0
Top Confident Effect Sizes6 versions - Latest release: 4 months ago - 3 dependent packages - 20 thousand downloads total - 14 stars on GitHub - 1 maintainer
goSTAG 1.34.0
A tool to use GO Subtrees to Tag and Annotate Genes within a set6 versions - Latest release: 3 months ago - 17.5 thousand downloads total - 1 maintainer
GWENA 1.20.0
Pipeline for augmented co-expression analysis6 versions - Latest release: 3 months ago - 16.1 thousand downloads total - 18 stars on GitHub - 1 maintainer
erccdashboard 1.44.0
Assess Differential Gene Expression Experiments with ERCC Controls6 versions - Latest release: 4 months ago - 27 thousand downloads total - 7 stars on GitHub - 1 maintainer
GEOexplorer 1.15.0
GEOexplorer: a webserver for gene expression analysis and visualisation6 versions - Latest release: 4 months ago - 8.42 thousand downloads total - 5 stars on GitHub - 1 maintainer
MAGAR 1.18.0
MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation an...6 versions - Latest release: 3 months ago - 10.3 thousand downloads total - 0 stars on GitHub - 1 maintainer
discordant 1.34.0
The Discordant Method: A Novel Approach for Differential Correlation6 versions - Latest release: 3 months ago - 19.2 thousand downloads total - 10 stars on GitHub - 1 maintainer
LimROTS 1.2.8
LimROTS: A Hybrid Method Integrating Empirical Bayes and Reproducibility-Optimized Statistics for...5 versions - Latest release: 3 months ago - 3.36 thousand downloads total - 4 stars on GitHub - 1 maintainer
deco 1.18.0 removed
Decomposing Heterogeneous Cohorts using Omic Data Profiling2 versions - Latest release: over 2 years ago - 4.59 thousand downloads total - 4 stars on GitHub - 1 maintainer
SGCP 1.10.0
SGCP: A semi-supervised pipeline for gene clustering using self-training approach in gene co-expr...9 versions - Latest release: about 1 month ago - 7.41 thousand downloads total - 2 stars on GitHub - 1 maintainer
EWCE 1.18.0
Expression Weighted Celltype Enrichment7 versions - Latest release: 4 months ago - 20.5 thousand downloads total - 53 stars on GitHub - 1 maintainer
transite 1.28.0
RNA-binding protein motif analysis8 versions - Latest release: 4 months ago - 13 thousand downloads total - 1 maintainer
MetaVolcanoR 1.18.0 removed
Gene Expression Meta-analysis Visualization Tool3 versions - Latest release: almost 2 years ago - 11 thousand downloads total - 1 maintainer
fcoex 1.16.0 removed
FCBF-based Co-Expression Networks for Single Cells2 versions - Latest release: over 2 years ago - 5.4 thousand downloads total - 1 maintainer
NanoStringQCPro 1.32.0 removed
Quality metrics and data processing methods for NanoString mRNA gene expression data1 version - Latest release: over 2 years ago - 18.7 thousand downloads total - 1 maintainer
Related Keywords
Software
28
GeneExpression
24
RNASeq
20
Microarray
19
DifferentialExpression
16
Transcriptomics
12
Transcription
12
ImmunoOncology
10
Clustering
10
DataImport
9
Normalization
9
QualityControl
8
MultipleComparison
8
Sequencing
8
GeneSetEnrichment
8
Preprocessing
8
Proteomics
7
Regression
7
TimeCourse
7
Bayesian
7
BatchEffect
7
Network
7
TwoChannel
6
GraphAndNetwork
6
ProprietaryPlatforms
6
OneChannel
6
AlternativeSplicing
6
DifferentialSplicing
6
MicroRNAArray
5
Genetics
5
ExonArray
5
BiomedicalInformatics
5
NetworkEnrichment
4
Visualization
4
Pathways
4
SystemsBiology
4
Epigenetics
3
FunctionalGenomics
3
Metabolomics
3
Classification
3
SingleCell
2
transcriptomics
2
bioinformatics
2
GO
2
DimensionReduction
2
DNAMethylation
2
StatisticalMethod
2
MethylationArray
2
DifferentialMethylation
2
CopyNumberVariation
2
PrincipalComponent
2
Cheminformatics
2
CellBasedAssays
2
Survival
2
CellBiology
2
FeatureExtraction
2
GenePrediction
2
GUI
2
Spatial
1
heterogeneity
1
heterogeneous-populations
1
omic-data-profiling
1
omics
1
patients-stratification
1
r
1
ReportWriting
1
sampling-methods
1
stratification
1
NeuralNetwork
1
clustering
1
genecoexpressionnetwork
1
single-cell-rna-seq
1
graphs
1
networkclustering
1
networks
1
self-training
1
semi-supervised-learning
1
unsupervised-learning
1
single-cell
1
deconvolution
1
ExperimentalDesign
1
GeneRegulation
1
SupportVectorMachine
1
HTA2.0
1
KEGG
1
NetworkInference
1
core-services
1
cran
1
r-package
1
ChipOnChip
1
co-expression
1
enrichment-analysis
1
gene
1
network-analysis
1
pipeline
1
CpGIsland
1
GeneticVariability
1
MethylSeq
1
SNP
1
BiologicalQuestion
1