bioconductor.org "mRNAMicroarray" keyword
View the packages on the bioconductor.org package registry that are tagged with the "mRNAMicroarray" keyword.
roastgsa 1.6.0
Rotation based gene set analysis4 versions - Latest release: 3 months ago - 4.06 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 0.3% on bioconductor.org
14 versions - Latest release: 2 months ago - 322 dependent packages - 5.97 million downloads total - 1 maintainer
limma 3.64.1
Linear Models for Microarray and Omics Data14 versions - Latest release: 2 months ago - 322 dependent packages - 5.97 million downloads total - 1 maintainer
EventPointer 3.16.0
An effective identification of alternative splicing events using junction arrays and RNA-Seq data5 versions - Latest release: 3 months ago - 16.3 thousand downloads total - 4 stars on GitHub - 1 maintainer
LimROTS 1.0.3
LimROTS: A Hybrid Method Integrating Empirical Bayes and Reproducibility-Optimized Statistics for...3 versions - Latest release: 4 days ago - 1.2 thousand downloads total - 1 stars on GitHub - 1 maintainer
topconfects 1.24.0
Top Confident Effect Sizes5 versions - Latest release: 2 months ago - 3 dependent packages - 16.4 thousand downloads total - 14 stars on GitHub - 1 maintainer
MAGAR 1.16.0
MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation an...5 versions - Latest release: 3 months ago - 8.23 thousand downloads total - 0 stars on GitHub - 1 maintainer
GWENA 1.18.0
Pipeline for augmented co-expression analysis5 versions - Latest release: 3 months ago - 13.6 thousand downloads total - 18 stars on GitHub - 1 maintainer
erccdashboard 1.42.0
Assess Differential Gene Expression Experiments with ERCC Controls5 versions - Latest release: 3 months ago - 24 thousand downloads total - 7 stars on GitHub - 1 maintainer
GeomxTools 3.11.0
NanoString GeoMx Tools6 versions - Latest release: 3 months ago - 3 dependent packages - 26 thousand downloads total - 1 maintainer
transite 1.26.0
RNA-binding protein motif analysis6 versions - Latest release: 3 months ago - 10.3 thousand downloads total - 1 maintainer
AMARETTO 1.24.0
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis an...5 versions - Latest release: 3 months ago - 14.2 thousand downloads total - 1 maintainer
SGCP 1.8.0
SGCP: A semi-supervised pipeline for gene clustering using self-training approach in gene co-expr...7 versions - Latest release: 3 months ago - 5.33 thousand downloads total - 2 stars on GitHub - 1 maintainer
CEMiTool 1.32.0
Co-expression Modules identification Tool6 versions - Latest release: 3 months ago - 33.9 thousand downloads total - 1 maintainer
discordant 1.32.0
The Discordant Method: A Novel Approach for Differential Correlation5 versions - Latest release: 3 months ago - 16 thousand downloads total - 10 stars on GitHub - 1 maintainer
acde 1.38.0
Artificial Components Detection of Differentially Expressed Genes5 versions - Latest release: 3 months ago - 21 thousand downloads total - 1 maintainer
GEOexplorer 1.14.0
GEOexplorer: a webserver for gene expression analysis and visualisation5 versions - Latest release: 3 months ago - 6.84 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 4.8% on bioconductor.org
5 versions - Latest release: 3 months ago - 73.6 thousand downloads total - 1 maintainer
affylmGUI 1.82.0
GUI for limma Package with Affymetrix Microarrays5 versions - Latest release: 3 months ago - 73.6 thousand downloads total - 1 maintainer
sigFeature 1.26.0
sigFeature: Significant feature selection using SVM-RFE & t-statistic5 versions - Latest release: 3 months ago - 19.6 thousand downloads total - 1 maintainer
goSTAG 1.32.0
A tool to use GO Subtrees to Tag and Annotate Genes within a set5 versions - Latest release: 3 months ago - 14 thousand downloads total - 1 maintainer
NanoStringNCTools 1.15.0
NanoString nCounter Tools6 versions - Latest release: 3 months ago - 2 dependent packages - 22.7 thousand downloads total - 1 maintainer
iNETgrate 1.6.0
Integrates DNA methylation data with gene expression in a single gene network4 versions - Latest release: 3 months ago - 4.25 thousand downloads total - 65 stars on GitHub - 1 maintainer
Top 5.3% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 52.3 thousand downloads total - 1 maintainer
puma 3.50.0
Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and ex...5 versions - Latest release: 3 months ago - 1 dependent package - 52.3 thousand downloads total - 1 maintainer
EWCE 1.16.0
Expression Weighted Celltype Enrichment6 versions - Latest release: 3 months ago - 15.6 thousand downloads total - 53 stars on GitHub - 1 maintainer
Top 5.4% on bioconductor.org
5 versions - Latest release: 3 months ago - 54.2 thousand downloads total - 1 maintainer
limmaGUI 1.84.0
GUI for limma Package With Two Color Microarrays5 versions - Latest release: 3 months ago - 54.2 thousand downloads total - 1 maintainer
MetaVolcanoR 1.18.0 removed
Gene Expression Meta-analysis Visualization Tool3 versions - Latest release: about 1 year ago - 11 thousand downloads total - 1 maintainer
deco 1.18.0 removed
Decomposing Heterogeneous Cohorts using Omic Data Profiling2 versions - Latest release: over 1 year ago - 4.59 thousand downloads total - 4 stars on GitHub - 1 maintainer
fcoex 1.16.0 removed
FCBF-based Co-Expression Networks for Single Cells2 versions - Latest release: over 1 year ago - 5.4 thousand downloads total - 1 maintainer
NanoStringQCPro 1.32.0 removed
Quality metrics and data processing methods for NanoString mRNA gene expression data1 version - Latest release: almost 2 years ago - 18.7 thousand downloads total - 1 maintainer
Related Keywords
Software
28
GeneExpression
24
RNASeq
20
Microarray
19
DifferentialExpression
16
Transcriptomics
12
Transcription
12
Clustering
10
ImmunoOncology
10
DataImport
9
Normalization
9
MultipleComparison
8
QualityControl
8
Sequencing
8
GeneSetEnrichment
8
Preprocessing
8
Proteomics
7
Regression
7
TimeCourse
7
Bayesian
7
BatchEffect
7
Network
7
TwoChannel
6
GraphAndNetwork
6
ProprietaryPlatforms
6
AlternativeSplicing
6
OneChannel
6
DifferentialSplicing
6
BiomedicalInformatics
5
Genetics
5
ExonArray
5
MicroRNAArray
5
NetworkEnrichment
4
Visualization
4
Pathways
4
SystemsBiology
4
Metabolomics
3
Classification
3
FunctionalGenomics
3
Epigenetics
3
FeatureExtraction
2
GenePrediction
2
PrincipalComponent
2
SingleCell
2
bioinformatics
2
DimensionReduction
2
StatisticalMethod
2
CellBasedAssays
2
transcriptomics
2
GUI
2
CellBiology
2
Cheminformatics
2
Survival
2
CopyNumberVariation
2
DNAMethylation
2
DifferentialMethylation
2
MethylationArray
2
GO
2
CpGIsland
1
patients-stratification
1
omics
1
omic-data-profiling
1
KEGG
1
NetworkInference
1
core-services
1
cran
1
r-package
1
ChipOnChip
1
HTA2.0
1
ReportWriting
1
deconvolution
1
heterogeneous-populations
1
single-cell
1
heterogeneity
1
stratification
1
sampling-methods
1
single-cell-rna-seq
1
deco
1
differential-expression
1
r
1
GeneticVariability
1
MethylSeq
1
SNP
1
co-expression
1
enrichment-analysis
1
gene
1
network-analysis
1
pipeline
1
ExperimentalDesign
1
Spatial
1
GeneRegulation
1
NeuralNetwork
1
clustering
1
genecoexpressionnetwork
1
graphs
1
networkclustering
1
networks
1
self-training
1
semi-supervised-learning
1
unsupervised-learning
1