bioconductor.org "proteomics" keyword
View the packages on the bioconductor.org package registry that are tagged with the "proteomics" keyword.
Top 1.9% on bioconductor.org
7 versions - Latest release: 2 months ago - 30 dependent packages - 474 thousand downloads total - 123 stars on GitHub - 1 maintainer
MSnbase 2.34.1
Base Functions and Classes for Mass Spectrometry and Proteomics7 versions - Latest release: 2 months ago - 30 dependent packages - 474 thousand downloads total - 123 stars on GitHub - 1 maintainer
MsQuality 1.8.0
MsQuality - Quality metric calculation from Spectra and MsExperiment objects7 versions - Latest release: 3 months ago - 5.42 thousand downloads total - 7 stars on GitHub - 1 maintainer
Top 8.6% on bioconductor.org
9 versions - Latest release: about 1 month ago - 15 dependent packages - 93.5 thousand downloads total - 41 stars on GitHub - 1 maintainer
Spectra 1.18.2
Spectra Infrastructure for Mass Spectrometry Data9 versions - Latest release: about 1 month ago - 15 dependent packages - 93.5 thousand downloads total - 41 stars on GitHub - 1 maintainer
topdownr 1.30.0
Investigation of Fragmentation Conditions in Top-Down Proteomics5 versions - Latest release: 2 months ago - 13.4 thousand downloads total - 1 stars on GitHub - 1 maintainer
NormalyzerDE 1.26.0
Evaluation of normalization methods and calculation of differential expression analysis statistics5 versions - Latest release: 3 months ago - 18.6 thousand downloads total - 24 stars on GitHub - 1 maintainer
mspms 1.0.0
Tools for the analysis of MSP-MS data1 version - Latest release: 3 months ago - 1.51 thousand downloads total - 0 stars on GitHub - 1 maintainer
MsDataHub 1.8.0
Mass Spectrometry Data on ExperimentHub5 versions - Latest release: 2 months ago - 2 dependent packages - 5.51 thousand downloads total - 1 stars on GitHub - 1 maintainer
koinar 1.2.0
KoinaR - Remote machine learning inference using Koina3 versions - Latest release: 3 months ago - 2.05 thousand downloads total - 37 stars on GitHub - 1 maintainer
cosmosR 1.16.0
COSMOS (Causal Oriented Search of Multi-Omic Space)5 versions - Latest release: 3 months ago - 8.53 thousand downloads total - 61 stars on GitHub - 1 maintainer
MSstatsPTM 2.10.0
Statistical Characterization of Post-translational Modifications9 versions - Latest release: 3 months ago - 2 dependent packages - 12.9 thousand downloads total - 6 stars on GitHub - 1 maintainer
scp 1.18.0
Mass Spectrometry-Based Single-Cell Proteomics Data Analysis5 versions - Latest release: 3 months ago - 11.5 thousand downloads total - 26 stars on GitHub - 1 maintainer
Top 7.0% on bioconductor.org
5 versions - Latest release: 3 months ago - 20 dependent packages - 1.22 million downloads total - 7 stars on GitHub - 1 maintainer
ProtGenerics 1.40.0
Generic infrastructure for Bioconductor mass spectrometry packages5 versions - Latest release: 3 months ago - 20 dependent packages - 1.22 million downloads total - 7 stars on GitHub - 1 maintainer
MSstatsLOBD 1.16.0
Assay characterization: estimation of limit of blanc(LoB) and limit of detection(LOD)5 versions - Latest release: 3 months ago - 5.97 thousand downloads total - 0 stars on GitHub - 1 maintainer
PRONE 1.2.1
The PROteomics Normalization Evaluator5 versions - Latest release: 29 days ago - 2.2 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 5.0% on bioconductor.org
7 versions - Latest release: 3 months ago - 19 dependent packages - 227 thousand downloads total - 17 stars on GitHub - 1 maintainer
MsCoreUtils 1.20.0
Core Utils for Mass Spectrometry Data7 versions - Latest release: 3 months ago - 19 dependent packages - 227 thousand downloads total - 17 stars on GitHub - 1 maintainer
QFeatures 1.18.0
Quantitative features for mass spectrometry data7 versions - Latest release: 3 months ago - 6 dependent packages - 89.8 thousand downloads total - 27 stars on GitHub - 1 maintainer
PSMatch 1.12.0
Handling and Managing Peptide Spectrum Matches5 versions - Latest release: 3 months ago - 2 dependent packages - 48.3 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 5.2% on bioconductor.org
7 versions - Latest release: 3 months ago - 3 dependent packages - 63.3 thousand downloads total - 16 stars on GitHub - 1 maintainer
pRoloc 1.48.0
A unifying bioinformatics framework for spatial proteomics7 versions - Latest release: 3 months ago - 3 dependent packages - 63.3 thousand downloads total - 16 stars on GitHub - 1 maintainer
Top 5.5% on bioconductor.org
6 versions - Latest release: 3 months ago - 3 dependent packages - 59.7 thousand downloads total - 5 stars on GitHub - 1 maintainer
rpx 2.16.0
R Interface to the ProteomeXchange Repository6 versions - Latest release: 3 months ago - 3 dependent packages - 59.7 thousand downloads total - 5 stars on GitHub - 1 maintainer
Related Keywords
Proteomics
19
Software
19
MassSpectrometry
16
mass-spectrometry
13
bioconductor
10
Infrastructure
8
Metabolomics
7
r
7
ImmunoOncology
6
metabolomics
6
QualityControl
5
rstats
4
Normalization
4
DifferentialExpression
4
bioinformatics
3
Preprocessing
3
Visualization
2
normalization
2
data
2
OneChannel
2
TwoChannel
2
proteomics-data
2
DataImport
2
visualisation
2
Bayesian
1
network-modelling
1
phosphoproteomics
1
transcriptomics
1
post-translational-modification
1
CellBasedAssays
1
GeneExpression
1
SingleCell
1
single-cell
1
software
1
data-analysis
1
evaluation
1
utils
1
peptide-spectrum-matches
1
Classification
1
Clustering
1
spatial-proteomics
1
ThirdPartyClient
1
proteomexchange
1
MultipleComparison
1
topdown
1
Coverage
1
limma
1
hacktoberfest
1
qc
1
protease
1
proteomics-data-analysis
1
ExperimentHubSoftware
1
r-package
1
deep-learning
1
machine-learning
1
python
1
CellBiology
1
GeneSignaling
1
Network
1
Pathways
1
Transcriptomics
1
data-integration
1
metabolomic-data
1