bioconductor.org "rna-seq" keyword
View the packages on the bioconductor.org package registry that are tagged with the "rna-seq" keyword.
Top 5.2% on bioconductor.org
9 versions - Latest release: 2 months ago - 1 dependent package - 75 thousand downloads total - 25 stars on GitHub - 1 maintainer
DEGreport 1.44.0
Report of DEG analysis9 versions - Latest release: 2 months ago - 1 dependent package - 75 thousand downloads total - 25 stars on GitHub - 1 maintainer
hermes 1.12.1 💰
Preprocessing, analyzing, and reporting of RNA-seq data7 versions - Latest release: 2 months ago - 9.67 thousand downloads total - 12 stars on GitHub - 1 maintainer
bambu 3.10.1
Context-Aware Transcript Quantification from Long Read RNA-Seq data9 versions - Latest release: 30 days ago - 1 dependent package - 25.8 thousand downloads total - 212 stars on GitHub - 1 maintainer
getDEE2 1.18.0
Programmatic access to the DEE2 RNA expression dataset6 versions - Latest release: 2 months ago - 7.91 thousand downloads total - 4 stars on GitHub - 1 maintainer
BgeeCall 1.24.0
Automatic RNA-Seq present/absent gene expression calls generation7 versions - Latest release: 3 months ago - 9.53 thousand downloads total - 3 stars on GitHub - 1 maintainer
APAlyzer 1.22.0
A toolkit for APA analysis using RNA-seq data5 versions - Latest release: 2 months ago - 11.6 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 6.9% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 53.5 thousand downloads total - 29 stars on GitHub - 1 maintainer
M3Drop 1.34.0
Michaelis-Menten Modelling of Dropouts in single-cell RNASeq5 versions - Latest release: 3 months ago - 1 dependent package - 53.5 thousand downloads total - 29 stars on GitHub - 1 maintainer
OUTRIDER 1.26.2
OUTRIDER - OUTlier in RNA-Seq fInDER7 versions - Latest release: about 1 month ago - 1 dependent package - 22.7 thousand downloads total - 53 stars on GitHub - 1 maintainer
RAIDS 1.6.1
Robust Ancestry Inference using Data Synthesis4 versions - Latest release: 3 months ago - 4.1 thousand downloads total - 5 stars on GitHub - 1 maintainer
icetea 1.26.0
Integrating Cap Enrichment with Transcript Expression Analysis5 versions - Latest release: 3 months ago - 10.5 thousand downloads total - 2 stars on GitHub - 1 maintainer
HybridExpress 1.4.0
Comparative analysis of RNA-seq data for hybrids and their progenitors4 versions - Latest release: 3 months ago - 3.62 thousand downloads total - 14 stars on GitHub - 1 maintainer
SplicingFactory 1.16.0
Splicing Diversity Analysis for Transcriptome Data5 versions - Latest release: 3 months ago - 5.84 thousand downloads total - 4 stars on GitHub - 1 maintainer
RNAAgeCalc 1.20.0
A multi-tissue transcriptional age calculator5 versions - Latest release: 3 months ago - 9.13 thousand downloads total - 8 stars on GitHub - 1 maintainer
pram 1.24.0
Pooling RNA-seq datasets for assembling transcript models5 versions - Latest release: 3 months ago - 9.18 thousand downloads total - 1 stars on GitHub - 1 maintainer
GEOfastq 1.16.0
Downloads ENA Fastqs With GEO Accessions5 versions - Latest release: 3 months ago - 7.56 thousand downloads total - 4 stars on GitHub - 1 maintainer
SVMDO 1.8.0
Identification of Tumor-Discriminating mRNA Signatures via Support Vector Machines Supported by D...8 versions - Latest release: 3 months ago - 5.3 thousand downloads total - 0 stars on GitHub - 1 maintainer
BgeeDB 2.34.0
Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities...6 versions - Latest release: 2 months ago - 2 dependent packages - 23.7 thousand downloads total - 16 stars on GitHub - 4 maintainers
VaSP 1.20.0
Quantification and Visualization of Variations of Splicing in Population5 versions - Latest release: 3 months ago - 6.78 thousand downloads total - 3 stars on GitHub - 1 maintainer
FRASER 2.4.3
Find RAre Splicing Events in RNA-Seq Data8 versions - Latest release: 29 days ago - 13.3 thousand downloads total - 46 stars on GitHub - 1 maintainer
ideal 2.2.0
Interactive Differential Expression AnaLysis5 versions - Latest release: 3 months ago - 18.9 thousand downloads total - 29 stars on GitHub - 1 maintainer
SpotClean 1.10.0
SpotClean adjusts for spot swapping in spatial transcriptomics data7 versions - Latest release: 3 months ago - 6.97 thousand downloads total - 33 stars on GitHub - 1 maintainer
clustifyr 1.20.0
Classifier for Single-cell RNA-seq Using Cell Clusters7 versions - Latest release: 3 months ago - 14.3 thousand downloads total - 121 stars on GitHub - 1 maintainer
ODER 1.6.0 removed
Optimising the Definition of Expressed Regions1 version - Latest release: almost 2 years ago - 1.01 thousand downloads total - 3 stars on GitHub - 1 maintainer
Related Keywords
Software
23
RNASeq
19
GeneExpression
15
Sequencing
14
Transcriptomics
11
DifferentialExpression
10
transcriptomics
7
ImmunoOncology
6
r
6
DataImport
5
gene-expression
4
r-package
3
AlternativeSplicing
3
GenomeAnnotation
3
splicing
3
genomics
3
bioinformatics
3
Visualization
3
bioconductor
3
Preprocessing
3
GeneSetEnrichment
3
Genetics
3
rna-seq-analysis
2
diagnostics
2
single-cell-rna-seq
2
scrna-seq
2
Annotation
2
single-cell
2
GUI
2
Microarray
2
outlier-detection
2
shiny
2
DimensionReduction
2
ReportWriting
2
differential-expression
2
DifferentialSplicing
2
Normalization
2
QualityControl
2
Transcription
2
Alignment
2
Classification
2
Coverage
2
FeatureExtraction
2
SingleCell
2
gini-index
1
shannon-entropy
1
simpson-index
1
biological-age
1
geo
1
fastq
1
transcript-model
1
genome-annotation
1
bioconductor-package
1
Technology
1
ResearchField
1
elastic-net
1
genotype-tissue-expression
1
GenePrediction
1
BiologicalQuestion
1
prediction
1
regularized-regression
1
annotation
1
marker-genes
1
clusters
1
assign-identities
1
spatial-transcriptomics
1
Spatial
1
user-friendly
1
reproducible-research
1
ShinyApps
1
rare-disease
1
aberrant-splicing
1
visualization
1
statistics
1
sqtl
1
ballgown
1
alternative-splicing
1
3s-scores
1
StatisticalMethod
1
KEGG
1
Clustering
1
enrichment-analysis
1
GO
1
machine-learning
1
Survival
1
GeneRegulation
1
rna-seq-libraries
1
present-absent-calls
1
intergenic-regions
1
gene-level
1
biology
1
rna-expression
1
data-mining
1
transcript-reconstruction
1
transcript-quantification
1
nanopore-sequencing
1
nanopore
1
long-reads
1
bambu
1
Regression
1