bioconductor.org "rnaseq" keyword
View the packages on the bioconductor.org package registry that are tagged with the "rnaseq" keyword.
SurfR 1.4.1
Surface Protein Prediction and Identification8 versions - Latest release: 2 months ago - 0 stars on GitHub - 1 maintainer
recount3 1.18.0
Explore and download data from the recount3 project5 versions - Latest release: 4 months ago - 24.1 thousand downloads total - 36 stars on GitHub - 1 maintainer
ppcseq 1.16.0
Probabilistic Outlier Identification for RNA Sequencing Generalized Linear Models5 versions - Latest release: 5 months ago - 7.1 thousand downloads total - 8 stars on GitHub - 1 maintainer
derfinderPlot 1.42.0
Plotting functions for derfinder5 versions - Latest release: 4 months ago - 3 dependent packages - 27.3 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 5.0% on bioconductor.org
6 versions - Latest release: 5 months ago - 6 dependent packages - 63.6 thousand downloads total - 41 stars on GitHub - 1 maintainer
recount 1.34.0
Explore and download data from the recount project6 versions - Latest release: 5 months ago - 6 dependent packages - 63.6 thousand downloads total - 41 stars on GitHub - 1 maintainer
Top 2.3% on bioconductor.org
6 versions - Latest release: about 2 months ago - 13 dependent packages - 442 thousand downloads total - 141 stars on GitHub - 1 maintainer
tximport 1.36.1
Import and summarize transcript-level estimates for transcript- and gene-level analysis6 versions - Latest release: about 2 months ago - 13 dependent packages - 442 thousand downloads total - 141 stars on GitHub - 1 maintainer
Top 8.7% on bioconductor.org
5 versions - Latest release: 4 months ago - 1 dependent package - 30.6 thousand downloads total - 10 stars on GitHub - 1 maintainer
regionReport 1.42.0
Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results5 versions - Latest release: 4 months ago - 1 dependent package - 30.6 thousand downloads total - 10 stars on GitHub - 1 maintainer
Top 4.5% on bioconductor.org
5 versions - Latest release: 4 months ago - 6 dependent packages - 83.7 thousand downloads total - 43 stars on GitHub - 1 maintainer
derfinder 1.42.0
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via ...5 versions - Latest release: 4 months ago - 6 dependent packages - 83.7 thousand downloads total - 43 stars on GitHub - 1 maintainer
fishpond 2.14.0
Fishpond: downstream methods and tools for expression data5 versions - Latest release: 4 months ago - 1 dependent package - 37 thousand downloads total - 29 stars on GitHub - 1 maintainer
tidySummarizedExperiment 1.18.1
Brings SummarizedExperiment to the Tidyverse6 versions - Latest release: 3 months ago - 5 dependent packages - 18.7 thousand downloads total - 26 stars on GitHub - 1 maintainer
Related Keywords
Software
10
RNASeq
10
DifferentialExpression
9
Sequencing
9
bioconductor
8
GeneExpression
7
r
6
Transcription
6
derfinder
5
ImmunoOncology
5
rstats
5
Coverage
4
Visualization
4
deseq2
4
DataImport
4
QualityControl
3
Transcriptomics
3
Normalization
3
annotation-agnostic
3
transcriptomics
2
exon
2
genomics
2
gene
2
human
2
illumina
2
junction
2
DifferentialPeakCalling
2
recount
2
edger
2
Clustering
2
count
2
BatchEffect
2
DifferentialMethylation
1
FunctionalPrediction
1
ReportWriting
1
regionreport
1
rmarkdown
1
ChIPSeq
1
AlternativeSplicing
1
DifferentialSplicing
1
MultipleComparison
1
Regression
1
SingleCell
1
gene-expression
1
FunctionalGenomics
1
salmon
1
scrnaseq
1
statistics
1
AssayDomain
1
Infrastructure
1
summarizedexperiment
1
tidyverse
1
surfaceome
1
surface
1
rpackage
1
public-data
1
mouse
1
proteins
1
plots
1
recount3
1
metaanalysis
1
enrichment-analysis
1
dge
1
PrincipalComponent
1
Pathways
1
bayesian-inference
1
GeneSetEnrichment
1
GenePrediction
1
negative-binomial
1
outlier
1
stan
1
GO
1
Preprocessing
1