Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "rnaseq" keyword
Top 2.3% on bioconductor.org
3 versions - Latest release: 6 months ago - 13 dependent packages - 360 thousand downloads total - 130 stars on GitHub - 1 maintainer
tximport 1.30.0
Import and summarize transcript-level estimates for transcript- and gene-level analysis3 versions - Latest release: 6 months ago - 13 dependent packages - 360 thousand downloads total - 130 stars on GitHub - 1 maintainer
ppcseq 1.10.0
Probabilistic Outlier Identification for RNA Sequencing Generalized Linear Models3 versions - Latest release: 6 months ago - 2.85 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 5.0% on bioconductor.org
3 versions - Latest release: 22 days ago - 6 dependent packages - 52.7 thousand downloads total - 40 stars on GitHub - 1 maintainer
recount 1.30.0
Explore and download data from the recount project3 versions - Latest release: 22 days ago - 6 dependent packages - 52.7 thousand downloads total - 40 stars on GitHub - 1 maintainer
fishpond 2.10.0
Fishpond: downstream methods and tools for expression data3 versions - Latest release: 15 days ago - 1 dependent package - 27.1 thousand downloads total - 21 stars on GitHub - 1 maintainer
derfinderPlot 1.38.0
Plotting functions for derfinder3 versions - Latest release: 22 days ago - 3 dependent packages - 21.4 thousand downloads total - 2 stars on GitHub - 1 maintainer
recount3 1.14.0
Explore and download data from the recount3 project3 versions - Latest release: 22 days ago - 14.1 thousand downloads total - 27 stars on GitHub - 1 maintainer
Top 4.5% on bioconductor.org
3 versions - Latest release: 22 days ago - 6 dependent packages - 67.7 thousand downloads total - 42 stars on GitHub - 1 maintainer
derfinder 1.38.0
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via ...3 versions - Latest release: 22 days ago - 6 dependent packages - 67.7 thousand downloads total - 42 stars on GitHub - 1 maintainer
Top 8.7% on bioconductor.org
2 versions - Latest release: 6 months ago - 1 dependent package - 24 thousand downloads total - 9 stars on GitHub - 1 maintainer
regionReport 1.36.0
Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results2 versions - Latest release: 6 months ago - 1 dependent package - 24 thousand downloads total - 9 stars on GitHub - 1 maintainer
Related Keywords
RNASeq
8
Software
8
Sequencing
7
bioconductor
7
DifferentialExpression
7
r
6
GeneExpression
5
ImmunoOncology
5
derfinder
5
rstats
5
Transcription
4
deseq2
4
Coverage
4
annotation-agnostic
3
Visualization
3
DataImport
3
Transcriptomics
2
exon
2
gene
2
human
2
illumina
2
junction
2
recount
2
DifferentialPeakCalling
2
Normalization
2
QualityControl
2
edger
2
count
2
rmarkdown
1
regionreport
1
ReportWriting
1
DifferentialMethylation
1
Preprocessing
1
ChIPSeq
1
recount3
1
mouse
1
transcriptomics
1
statistics
1
scrnaseq
1
salmon
1
genomics
1
gene-expression
1
SingleCell
1
Regression
1
MultipleComparison
1
DifferentialSplicing
1
BatchEffect
1
AlternativeSplicing
1
Clustering
1
stan
1
outlier
1
bayesian-inference
1
negative-binomial
1