bioconductor.org "rstats" keyword
View the packages on the bioconductor.org package registry that are tagged with the "rstats" keyword.
Top 1.4% on bioconductor.org
5 versions - Latest release: 3 months ago - 47 dependent packages - 2.1 million downloads total - 98 stars on GitHub - 1 maintainer
GEOquery 2.76.0
Get data from NCBI Gene Expression Omnibus (GEO)5 versions - Latest release: 3 months ago - 47 dependent packages - 2.1 million downloads total - 98 stars on GitHub - 1 maintainer
recount3 1.18.0
Explore and download data from the recount3 project5 versions - Latest release: 3 months ago - 23.5 thousand downloads total - 35 stars on GitHub - 1 maintainer
DeconvoBuddies 1.0.0
Helper Functions for LIBD Deconvolution1 version - Latest release: 3 months ago - 1.16 thousand downloads total - 5 stars on GitHub - 1 maintainer
magrene 1.10.0
Motif Analysis In Gene Regulatory Networks5 versions - Latest release: 3 months ago - 5.07 thousand downloads total - 1 stars on GitHub - 1 maintainer
CBEA 1.8.0
Competitive Balances for Taxonomic Enrichment Analysis in R5 versions - Latest release: 3 months ago - 5.4 thousand downloads total - 6 stars on GitHub - 1 maintainer
scMerge 1.24.0
scMerge: Merging multiple batches of scRNA-seq data5 versions - Latest release: 3 months ago - 2 dependent packages - 34.6 thousand downloads total - 67 stars on GitHub - 1 maintainer
categoryCompare 1.52.0
Meta-analysis of high-throughput experiments using feature annotations5 versions - Latest release: 3 months ago - 28.9 thousand downloads total - 5 stars on GitHub - 1 maintainer
SEraster 1.0.0
Rasterization Preprocessing Framework for Scalable Spatial Omics Data Analysis1 version - Latest release: 3 months ago - 1.2 thousand downloads total - 17 stars on GitHub - 1 maintainer
QFeatures 1.18.0
Quantitative features for mass spectrometry data7 versions - Latest release: 3 months ago - 6 dependent packages - 95.7 thousand downloads total - 27 stars on GitHub - 1 maintainer
Top 5.0% on bioconductor.org
7 versions - Latest release: 3 months ago - 19 dependent packages - 234 thousand downloads total - 17 stars on GitHub - 1 maintainer
MsCoreUtils 1.20.0
Core Utils for Mass Spectrometry Data7 versions - Latest release: 3 months ago - 19 dependent packages - 234 thousand downloads total - 17 stars on GitHub - 1 maintainer
PSMatch 1.12.0
Handling and Managing Peptide Spectrum Matches5 versions - Latest release: 3 months ago - 2 dependent packages - 53.4 thousand downloads total - 3 stars on GitHub - 1 maintainer
CompoundDb 1.12.1
Creating and Using (Chemical) Compound Annotation Databases6 versions - Latest release: about 1 month ago - 3 dependent packages - 24.3 thousand downloads total - 18 stars on GitHub - 1 maintainer
dar 1.4.0
Differential Abundance Analysis by Consensus3 versions - Latest release: 3 months ago - 3.24 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 9.4% on bioconductor.org
8 versions - Latest release: 2 months ago - 31.4 thousand downloads total - 187 stars on GitHub - 1 maintainer
MicrobiotaProcess 1.20.1
A comprehensive R package for managing and analyzing microbiome and other ecological data within ...8 versions - Latest release: 2 months ago - 31.4 thousand downloads total - 187 stars on GitHub - 1 maintainer
MsBackendMsp 1.12.0
Mass Spectrometry Data Backend for NIST msp Files5 versions - Latest release: 2 months ago - 14.3 thousand downloads total - 5 stars on GitHub - 1 maintainer
biocthis 1.18.0
Automate package and project setup for Bioconductor packages5 versions - Latest release: 2 months ago - 2 dependent packages - 25.3 thousand downloads total - 53 stars on GitHub - 1 maintainer
derfinderPlot 1.42.0
Plotting functions for derfinder5 versions - Latest release: 2 months ago - 3 dependent packages - 26.9 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 5.0% on bioconductor.org
6 versions - Latest release: 3 months ago - 6 dependent packages - 63 thousand downloads total - 41 stars on GitHub - 1 maintainer
recount 1.34.0
Explore and download data from the recount project6 versions - Latest release: 3 months ago - 6 dependent packages - 63 thousand downloads total - 41 stars on GitHub - 1 maintainer
hermes 1.12.1 💰
Preprocessing, analyzing, and reporting of RNA-seq data7 versions - Latest release: 3 months ago - 9.67 thousand downloads total - 12 stars on GitHub - 1 maintainer
Top 8.6% on bioconductor.org
9 versions - Latest release: about 1 month ago - 15 dependent packages - 93.5 thousand downloads total - 41 stars on GitHub - 1 maintainer
Spectra 1.18.2
Spectra Infrastructure for Mass Spectrometry Data9 versions - Latest release: about 1 month ago - 15 dependent packages - 93.5 thousand downloads total - 41 stars on GitHub - 1 maintainer
Voyager 1.10.0
From geospatial to spatial omics5 versions - Latest release: 3 months ago - 9.14 thousand downloads total - 95 stars on GitHub - 1 maintainer
Top 2.9% on bioconductor.org
6 versions - Latest release: 24 days ago - 8 dependent packages - 106 thousand downloads total - 318 stars on GitHub - 1 maintainer
karyoploteR 1.34.2
Plot customizable linear genomes displaying arbitrary data6 versions - Latest release: 24 days ago - 8 dependent packages - 106 thousand downloads total - 318 stars on GitHub - 1 maintainer
visiumStitched 1.0.0
Enable downstream analysis of Visium capture areas stitched together with Fiji1 version - Latest release: 3 months ago - 1.43 thousand downloads total - 4 stars on GitHub - 1 maintainer
tidytof 1.2.0
Analyze High-dimensional Cytometry Data Using Tidy Data Principles2 versions - Latest release: 3 months ago - 2.04 thousand downloads total - 19 stars on GitHub - 1 maintainer
doubletrouble 1.8.0
Identification and classification of duplicated genes11 versions - Latest release: 3 months ago - 5.74 thousand downloads total - 27 stars on GitHub - 1 maintainer
Top 4.5% on bioconductor.org
5 versions - Latest release: 3 months ago - 6 dependent packages - 82.9 thousand downloads total - 43 stars on GitHub - 1 maintainer
derfinder 1.42.0
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via ...5 versions - Latest release: 3 months ago - 6 dependent packages - 82.9 thousand downloads total - 43 stars on GitHub - 1 maintainer
CopyNumberPlots 1.24.0
Create Copy-Number Plots using karyoploteR functionality6 versions - Latest release: about 2 months ago - 2 dependent packages - 13.9 thousand downloads total - 6 stars on GitHub - 1 maintainer
TREG 1.12.0
Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data5 versions - Latest release: 3 months ago - 5.76 thousand downloads total - 4 stars on GitHub - 1 maintainer
cogeqc 1.12.0
Systematic quality checks on comparative genomics analyses6 versions - Latest release: 3 months ago - 6.54 thousand downloads total - 8 stars on GitHub - 1 maintainer
Top 8.7% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 30.2 thousand downloads total - 9 stars on GitHub - 1 maintainer
regionReport 1.42.0
Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results5 versions - Latest release: 3 months ago - 1 dependent package - 30.2 thousand downloads total - 9 stars on GitHub - 1 maintainer
planttfhunter 1.8.0
Identification and classification of plant transcription factors5 versions - Latest release: 3 months ago - 4.67 thousand downloads total - 1 stars on GitHub - 1 maintainer
regutools 1.20.0
regutools: an R package for data extraction from RegulonDB5 versions - Latest release: 3 months ago - 8.67 thousand downloads total - 5 stars on GitHub - 1 maintainer
syntenet 1.10.0
Inference And Analysis Of Synteny Networks8 versions - Latest release: 3 months ago - 1 dependent package - 7.84 thousand downloads total - 30 stars on GitHub - 1 maintainer
Top 5.2% on bioconductor.org
5 versions - Latest release: 3 months ago - 1 dependent package - 72.4 thousand downloads total - 0 stars on GitHub - 1 maintainer
derfinderHelper 1.42.0
derfinder helper package5 versions - Latest release: 3 months ago - 1 dependent package - 72.4 thousand downloads total - 0 stars on GitHub - 1 maintainer
escheR 1.8.0
Unified multi-dimensional visualizations with Gestalt principles6 versions - Latest release: 3 months ago - 2 dependent packages - 5.95 thousand downloads total - 7 stars on GitHub - 1 maintainer
BiocPkgTools 1.26.2
Collection of simple tools for learning about Bioconductor Packages6 versions - Latest release: 2 months ago - 20.7 thousand downloads total - 21 stars on GitHub - 1 maintainer
qsvaR 1.12.0
Generate Quality Surrogate Variable Analysis for Degradation Correction5 versions - Latest release: 3 months ago - 7.57 thousand downloads total - 0 stars on GitHub - 1 maintainer
megadepth 1.18.0
megadepth: BigWig and BAM related utilities5 versions - Latest release: 3 months ago - 2 dependent packages - 13.4 thousand downloads total - 11 stars on GitHub - 1 maintainer
tpSVG 1.4.0
Thin plate models to detect spatially variable genes4 versions - Latest release: 3 months ago - 3.22 thousand downloads total - 2 stars on GitHub - 1 maintainer
decoupleR 2.14.0
decoupleR: Ensemble of computational methods to infer biological activities from omics data6 versions - Latest release: 3 months ago - 3 dependent packages - 54.6 thousand downloads total - 256 stars on GitHub - 1 maintainer
POMA 1.18.0
Tools for Omics Data Analysis5 versions - Latest release: 3 months ago - 1 dependent package - 10.6 thousand downloads total - 11 stars on GitHub - 1 maintainer
brainflowprobes 1.20.0 removed
Plots and annotation for choosing BrainFlow target probe sequence4 versions - Latest release: 8 months ago - 5.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
RLSeq 1.6.0 removed
RLSeq: An analysis package for R-loop mapping data3 versions - Latest release: almost 2 years ago - 2.67 thousand downloads total - 2 stars on GitHub - 1 maintainer
Related Keywords
Software
43
bioconductor
25
r
17
Sequencing
14
RNASeq
12
GeneExpression
12
Visualization
11
Transcriptomics
11
Coverage
10
DataImport
9
DifferentialExpression
9
bioinformatics
8
r-package
7
derfinder
6
SingleCell
6
Transcription
6
mass-spectrometry
6
MassSpectrometry
6
Infrastructure
6
ImmunoOncology
5
Metabolomics
5
Proteomics
5
Network
5
FunctionalGenomics
5
Spatial
5
rnaseq
5
Preprocessing
5
Normalization
5
Classification
4
metabolomics
4
proteomics
4
QualityControl
3
Microbiome
3
single-cell
3
MultipleComparison
3
OneChannel
3
spatial-transcriptomics
3
StatisticalMethod
3
comparative-genomics
3
human
3
SystemsBiology
3
Phylogenetics
3
ComparativeGenomics
3
annotation-agnostic
3
DifferentialPeakCalling
2
WholeGenome
2
FlowCytometry
2
Regression
2
evolutionary-genomics
2
GeneRegulation
2
genomics-visualization
2
data-visualization
2
microbiome
2
DimensionReduction
2
NetworkInference
2
ReportWriting
2
DNASeq
2
deseq2
2
CopyNumberVariation
2
exploratory-data-analysis
2
ChIPSeq
2
data-science
2
genomics
2
count
2
exon
2
gene
2
illumina
2
junction
2
recount
2
recount3
2
deconvolution
2
GraphAndNetwork
2
network-science
2
Metagenomics
2
BatchEffect
2
spatial-omics
2
Annotation
2
BiologicalQuestion
1
u24ca289073
1
metadata
1
visualization
1
multidimensional
1
synteny-network
1
synteny
1
phylogenomics
1
regulondb
1
cdsb
1
spatial-data-analysis
1
transcription-factors
1
protein-domains
1
plants
1
plant-genomics
1
hidden-markov-models
1
gene-families
1
functional-genomics
1
HiddenMarkovModel
1
GenomeAnnotation
1
FunctionalPrediction
1
rmarkdown
1
regionreport
1