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bioconductor.org "single-cell-rna-seq" keyword

View the packages on the bioconductor.org package registry that are tagged with the "single-cell-rna-seq" keyword.

peco 1.20.0
A Supervised Approach for **P**r**e**dicting **c**ell Cycle Pr**o**gression using scRNA-seq data
5 versions - Latest release: 2 months ago - 8.14 thousand downloads total - 12 stars on GitHub - 1 maintainer
scRNAseqApp 1.8.0
A single-cell RNAseq Shiny app-package
7 versions - Latest release: 3 months ago - 5.56 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 7.7% on bioconductor.org
Nebulosa 1.18.0
Single-Cell Data Visualisation Using Kernel Gene-Weighted Density Estimation
6 versions - Latest release: 2 months ago - 63.9 thousand downloads total - 103 stars on GitHub - 1 maintainer
Top 6.9% on bioconductor.org
M3Drop 1.34.0
Michaelis-Menten Modelling of Dropouts in single-cell RNASeq
5 versions - Latest release: 3 months ago - 1 dependent package - 53.5 thousand downloads total - 29 stars on GitHub - 1 maintainer
raer 1.6.0
RNA editing tools in R
5 versions - Latest release: 3 months ago - 4.17 thousand downloads total - 8 stars on GitHub - 1 maintainer
tidySingleCellExperiment 1.18.1
Brings SingleCellExperiment to the Tidyverse
6 versions - Latest release: 2 months ago - 4 dependent packages - 14.5 thousand downloads total - 36 stars on GitHub - 1 maintainer
Top 2.1% on bioconductor.org
scran 1.36.0
Methods for Single-Cell RNA-Seq Data Analysis
7 versions - Latest release: 3 months ago - 62 dependent packages - 510 thousand downloads total - 41 stars on GitHub - 1 maintainer
Top 4.4% on bioconductor.org
SC3 1.36.0
Single-Cell Consensus Clustering
5 versions - Latest release: 3 months ago - 4 dependent packages - 72.9 thousand downloads total - 125 stars on GitHub - 1 maintainer
BASiCStan 1.10.0
Stan implementation of BASiCS
5 versions - Latest release: 3 months ago - 5.37 thousand downloads total - 0 stars on GitHub - 1 maintainer
EWCE 1.16.0
Expression Weighted Celltype Enrichment
6 versions - Latest release: 2 months ago - 15.6 thousand downloads total - 53 stars on GitHub - 1 maintainer
Top 9.9% on bioconductor.org
scmap 1.30.0
A tool for unsupervised projection of single cell RNA-seq data
5 versions - Latest release: 3 months ago - 36 thousand downloads total - 86 stars on GitHub - 1 maintainer
clustifyr 1.20.0
Classifier for Single-cell RNA-seq Using Cell Clusters
7 versions - Latest release: 3 months ago - 14.3 thousand downloads total - 121 stars on GitHub - 1 maintainer
Related Keywords
Software 12 SingleCell 11 RNASeq 10 GeneExpression 9 Sequencing 8 Transcriptomics 6 Visualization 6 DifferentialExpression 5 bioconductor-package 4 human-cell-atlas 4 ImmunoOncology 4 Transcription 3 Normalization 3 DimensionReduction 3 single-cell 3 Clustering 3 Classification 3 Annotation 2 Microarray 2 SupportVectorMachine 2 DataRepresentation 2 rna-seq 2 FeatureExtraction 2 single-cell-analysis 2 marker-genes 1 clusters 1 GUI 1 assign-identities 1 r 1 Bayesian 1 CellBiology 1 bayesian 1 BiomedicalInformatics 1 FunctionalGenomics 1 GeneSetEnrichment 1 Genetics 1 projection-mapping 1 Preprocessing 1 OneChannel 1 Proteomics 1 mRNAMicroarray 1 deconvolution 1 transcriptomics 1 DataImport 1 StatisticalMethod 1 cell-cycle 1 interactive-visualizations 1 multiple-users 1 shiny-apps 1 single-cell-multiomics 1 Alignment 1 Coverage 1 Epitranscriptomics 1 MultipleComparison 1 rna-seq-analysis 1 AssayDomain 1 Infrastructure 1 QualityControl 1 bioconductor 1 dplyr 1 ggplot2 1 plotly 1 single-cell-sequencing 1 singlecellexperiment 1 tibble 1 tidyr 1 tidyverse 1