bioconductor.org "spatial-transcriptomics" keyword
View the packages on the bioconductor.org package registry that are tagged with the "spatial-transcriptomics" keyword.
Voyager 1.10.0
From geospatial to spatial omics5 versions - Latest release: 2 months ago - 9.14 thousand downloads total - 95 stars on GitHub - 1 maintainer
visiumStitched 1.0.0
Enable downstream analysis of Visium capture areas stitched together with Fiji1 version - Latest release: 3 months ago - 1.43 thousand downloads total - 4 stars on GitHub - 1 maintainer
SpotSweeper 1.4.0
Spatially-aware quality control for spatial transcriptomics7 versions - Latest release: 3 months ago - 3.55 thousand downloads total - 9 stars on GitHub - 1 maintainer
mistyR 1.16.0
Multiview Intercellular SpaTial modeling framework6 versions - Latest release: 3 months ago - 8.81 thousand downloads total - 44 stars on GitHub - 1 maintainer
SEraster 1.0.0
Rasterization Preprocessing Framework for Scalable Spatial Omics Data Analysis1 version - Latest release: 3 months ago - 931 downloads total - 17 stars on GitHub - 1 maintainer
SpotClean 1.10.0
SpotClean adjusts for spot swapping in spatial transcriptomics data7 versions - Latest release: 3 months ago - 6.97 thousand downloads total - 33 stars on GitHub - 1 maintainer
BatchSVG 1.0.0
Identify Batch-Biased Features in Spatially Variable Genes1 version - Latest release: 3 months ago - 902 downloads total - 2 stars on GitHub - 1 maintainer
Related Keywords
Software
7
Spatial
7
Transcriptomics
6
GeneExpression
5
bioconductor
4
SingleCell
3
rstats
3
Visualization
2
r
2
spatial
2
QualityControl
2
DataImport
2
Preprocessing
2
SystemsBiology
1
biology
1
intercellular
1
machine-learning
1
modular
1
molecular-biology
1
multiview
1
spatial-analysis
1
spatial-data-analysis
1
spatial-omics
1
RNASeq
1
bioconductor-package
1
Sequencing
1
rna-seq
1
BatchEffect
1
batch-effect
1
eda
1
esda
1
exploratory-data-analysis
1
omics
1
r-package
1
spatial-statistics
1
transcriptomics
1
Transcription
1
10xgenomics
1
spatialexperiment
1
spatiallibd
1
visium
1
quality-control
1
BiomedicalInformatics
1
CellBiology
1
DecisionTree
1
Regression
1