bioconductor.org "spatial-transcriptomics" keyword
View the packages on the bioconductor.org package registry that are tagged with the "spatial-transcriptomics" keyword.
SEraster 1.2.0
Rasterization Preprocessing Framework for Scalable Spatial Omics Data Analysis2 versions - Latest release: 2 months ago - 2.51 thousand downloads total - 18 stars on GitHub - 1 maintainer
visiumStitched 1.2.0
Enable downstream analysis of Visium capture areas stitched together with Fiji2 versions - Latest release: 3 months ago - 2.88 thousand downloads total - 4 stars on GitHub - 1 maintainer
SpotSweeper 1.6.0
Spatially-aware quality control for spatial transcriptomics8 versions - Latest release: 3 months ago - 6.21 thousand downloads total - 12 stars on GitHub - 1 maintainer
SpotClean 1.12.0
SpotClean adjusts for spot swapping in spatial transcriptomics data8 versions - Latest release: 2 months ago - 9.41 thousand downloads total - 33 stars on GitHub - 1 maintainer
mistyR 1.18.0
Multiview Intercellular SpaTial modeling framework7 versions - Latest release: 2 months ago - 12.3 thousand downloads total - 44 stars on GitHub - 1 maintainer
BatchSVG 1.2.0
Identify Batch-Biased Features in Spatially Variable Genes2 versions - Latest release: 3 months ago - 2.65 thousand downloads total - 3 stars on GitHub - 1 maintainer
Voyager 1.12.0
From geospatial to spatial omics6 versions - Latest release: 3 months ago - 11.7 thousand downloads total - 96 stars on GitHub - 1 maintainer
Related Keywords
Software
7
Spatial
7
Transcriptomics
6
GeneExpression
5
bioconductor
4
SingleCell
3
rstats
3
DataImport
2
Visualization
2
Preprocessing
2
r
2
spatial
2
QualityControl
2
spatial-analysis
1
intercellular
1
machine-learning
1
modular
1
molecular-biology
1
multiview
1
BatchEffect
1
batch-effect
1
bioconductor-package
1
eda
1
esda
1
exploratory-data-analysis
1
omics
1
r-package
1
spatial-statistics
1
transcriptomics
1
spatial-data-analysis
1
spatial-omics
1
Transcription
1
10xgenomics
1
spatialexperiment
1
spatiallibd
1
visium
1
quality-control
1
RNASeq
1
Sequencing
1
rna-seq
1
BiomedicalInformatics
1
CellBiology
1
DecisionTree
1
Regression
1
SystemsBiology
1
biology
1