bioconductor.org "spatial-transcriptomics" keyword
Voyager 1.12.0
From geospatial to spatial omics6 versions - Latest release: 5 months ago - 13 thousand downloads total - 96 stars on GitHub - 1 maintainer
BatchSVG 1.2.0
Identify Batch-Biased Features in Spatially Variable Genes2 versions - Latest release: 4 months ago - 3.08 thousand downloads total - 3 stars on GitHub - 1 maintainer
SEraster 1.2.0
Rasterization Preprocessing Framework for Scalable Spatial Omics Data Analysis2 versions - Latest release: 4 months ago - 2.86 thousand downloads total - 18 stars on GitHub - 1 maintainer
mistyR 1.18.0
Multiview Intercellular SpaTial modeling framework7 versions - Latest release: 4 months ago - 12.7 thousand downloads total - 44 stars on GitHub - 1 maintainer
visiumStitched 1.2.0
Enable downstream analysis of Visium capture areas stitched together with Fiji2 versions - Latest release: 4 months ago - 3.12 thousand downloads total - 4 stars on GitHub - 1 maintainer
SpotSweeper 1.6.0
Spatially-aware quality control for spatial transcriptomics8 versions - Latest release: 4 months ago - 6.88 thousand downloads total - 12 stars on GitHub - 1 maintainer
SpotClean 1.12.1
SpotClean adjusts for spot swapping in spatial transcriptomics data9 versions - Latest release: 30 days ago - 9.82 thousand downloads total - 34 stars on GitHub - 1 maintainer
Related Keywords
Software
7
Spatial
7
Transcriptomics
6
GeneExpression
5
bioconductor
4
SingleCell
3
rstats
3
DataImport
2
Preprocessing
2
QualityControl
2
spatial
2
r
2
Visualization
2
modular
1
machine-learning
1
molecular-biology
1
multiview
1
intercellular
1
biology
1
SystemsBiology
1
Transcription
1
10xgenomics
1
spatialexperiment
1
spatiallibd
1
visium
1
quality-control
1
RNASeq
1
Sequencing
1
rna-seq
1
eda
1
esda
1
exploratory-data-analysis
1
omics
1
r-package
1
spatial-statistics
1
transcriptomics
1
BatchEffect
1
batch-effect
1
bioconductor-package
1
spatial-analysis
1
spatial-data-analysis
1
spatial-omics
1
BiomedicalInformatics
1
CellBiology
1
DecisionTree
1
Regression
1