bioconductor.org "transcriptomics" keyword
Voyager 1.12.0
From geospatial to spatial omics6 versions - Latest release: 4 months ago - 12.3 thousand downloads total - 96 stars on GitHub - 1 maintainer
spatialDE 1.16.0
R wrapper for SpatialDE7 versions - Latest release: 4 months ago - 11 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 5.5% on bioconductor.org
6 versions - Latest release: 3 months ago - 8 dependent packages - 63.3 thousand downloads total - 228 stars on GitHub - 1 maintainer
iSEE 2.22.0
Interactive SummarizedExperiment Explorer6 versions - Latest release: 3 months ago - 8 dependent packages - 63.3 thousand downloads total - 228 stars on GitHub - 1 maintainer
RIVER 1.34.0
R package for RIVER (RNA-Informed Variant Effect on Regulation)6 versions - Latest release: 3 months ago - 16.1 thousand downloads total - 10 stars on GitHub - 1 maintainer
scBubbletree 1.12.0
Quantitative visual exploration of scRNA-seq data6 versions - Latest release: 3 months ago - 7.23 thousand downloads total - 7 stars on GitHub - 1 maintainer
ODER 1.6.0 removed
Optimising the Definition of Expressed Regions1 version - Latest release: over 2 years ago - 1.01 thousand downloads total - 3 stars on GitHub - 1 maintainer
markeR 1.0.0
An R Toolkit for Evaluating Gene Signatures as Phenotypic Markers1 version - Latest release: 4 months ago - 854 downloads total - 7 stars on GitHub - 1 maintainer
gemma.R 3.6.1
A wrapper for Gemma's Restful API to access curated gene expression data and differential express...18 versions - Latest release: 26 days ago - 9.03 thousand downloads total - 10 stars on GitHub - 1 maintainer
HybridExpress 1.6.0
Comparative analysis of RNA-seq data for hybrids and their progenitors5 versions - Latest release: 3 months ago - 5.39 thousand downloads total - 14 stars on GitHub - 1 maintainer
SplicingFactory 1.18.0
Splicing Diversity Analysis for Transcriptome Data6 versions - Latest release: 3 months ago - 7.93 thousand downloads total - 4 stars on GitHub - 1 maintainer
EWCE 1.18.0
Expression Weighted Celltype Enrichment7 versions - Latest release: 3 months ago - 20.5 thousand downloads total - 53 stars on GitHub - 1 maintainer
icetea 1.28.0
Integrating Cap Enrichment with Transcript Expression Analysis6 versions - Latest release: 3 months ago - 13 thousand downloads total - 2 stars on GitHub - 1 maintainer
fishpond 2.16.0
Fishpond: downstream methods and tools for expression data6 versions - Latest release: 3 months ago - 1 dependent package - 58.8 thousand downloads total - 29 stars on GitHub - 1 maintainer
tidyomics 1.6.0
Easily install and load the tidyomics ecosystem5 versions - Latest release: 3 months ago - 5.59 thousand downloads total - 68 stars on GitHub - 1 maintainer
getDEE2 1.20.0
Programmatic access to the DEE2 RNA expression dataset7 versions - Latest release: 3 months ago - 9.96 thousand downloads total - 4 stars on GitHub - 1 maintainer
tidySummarizedExperiment 1.20.1
Brings SummarizedExperiment to the Tidyverse7 versions - Latest release: 3 months ago - 5 dependent packages - 23.4 thousand downloads total - 26 stars on GitHub - 1 maintainer
GWENA 1.20.0
Pipeline for augmented co-expression analysis6 versions - Latest release: 3 months ago - 15.8 thousand downloads total - 18 stars on GitHub - 1 maintainer
tidybulk 2.0.1
Brings transcriptomics to the tidyverse8 versions - Latest release: 4 months ago - 1 dependent package - 25.1 thousand downloads total - 173 stars on GitHub - 1 maintainer
GeneTonic 3.4.0
Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional ...6 versions - Latest release: 3 months ago - 1 dependent package - 21.2 thousand downloads total - 78 stars on GitHub - 1 maintainer
SVMDO 1.10.0
Identification of Tumor-Discriminating mRNA Signatures via Support Vector Machines Supported by D...9 versions - Latest release: 3 months ago - 7.11 thousand downloads total - 0 stars on GitHub - 1 maintainer
cosmosR 1.18.0
COSMOS (Causal Oriented Search of Multi-Omic Space)6 versions - Latest release: 3 months ago - 11.4 thousand downloads total - 62 stars on GitHub - 1 maintainer
bambu 3.12.1
Context-Aware Transcript Quantification from Long Read RNA-Seq data11 versions - Latest release: about 1 month ago - 1 dependent package - 31.9 thousand downloads total - 217 stars on GitHub - 1 maintainer
Related Keywords
Software
22
Transcriptomics
19
GeneExpression
17
RNASeq
13
DifferentialExpression
11
Transcription
10
Sequencing
9
Visualization
8
Clustering
7
rna-seq
7
Normalization
6
genomics
6
bioconductor
6
GeneSetEnrichment
5
gene-expression
5
SingleCell
5
r
4
Microarray
3
Classification
3
Regression
3
Pathways
3
FunctionalGenomics
3
shiny
3
ImmunoOncology
3
GUI
3
AssayDomain
3
Infrastructure
3
tidyverse
3
QualityControl
3
mRNAMicroarray
2
Genetics
2
bioinformatics
2
rna-seq-analysis
2
TranscriptomeVariant
2
BatchEffect
2
Annotation
2
rna-seq-data
2
r-package
2
MultipleComparison
2
rnaseq
2
GenomeAnnotation
2
DataImport
2
ShinyApps
2
Proteomics
2
BiomedicalInformatics
2
FeatureExtraction
2
Bayesian
2
visualization
2
Network
2
single-cell
2
GO
2
clustering
2
gui
2
AlternativeSplicing
2
DifferentialSplicing
2
deseq2
1
summarizedexperiment
1
GraphAndNetwork
1
differential-expression
1
Spatial
1
edger
1
bulk-transcriptional-analyses
1
pipeline
1
rna-expression
1
network-analysis
1
cytometry
1
gene
1
enrichment-analysis
1
data-mining
1
co-expression
1
NetworkEnrichment
1
user-friendly
1
Survival
1
machine-learning
1
CellBiology
1
GeneSignaling
1
Metabolomics
1
data-integration
1
metabolomic-data
1
network-modelling
1
phosphoproteomics
1
proteomics
1
Alignment
1
Coverage
1
GenomeAssembly
1
LongRead
1
bambu
1
long-reads
1
nanopore
1
nanopore-sequencing
1
transcript-quantification
1
transcript-reconstruction
1
ensembl-ids
1
entrez
1
gene-symbols
1
gsea
1
mds-dimensions
1
pca
1
pipe
1
redundancy
1