Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

bioconductor.org maintainers: Aaron Lun

chihaya 1.2.0
Save Delayed Operations to a HDF5 File
3 versions - Latest release: 6 months ago - 1 dependent package - 1.58 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 8.0% on bioconductor.org
beachmat 2.20.0
Compiling Bioconductor to Handle Each Matrix Type
4 versions - Latest release: 13 days ago - 15 dependent packages - 928 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 9.3% on bioconductor.org
BiocSingular 1.20.0
Singular Value Decomposition for Bioconductor Packages
3 versions - Latest release: 20 days ago - 28 dependent packages - 702 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 4.4% on bioconductor.org
SingleR 2.6.0
Reference-Based Single-Cell RNA-Seq Annotation
4 versions - Latest release: 5 days ago - 5 dependent packages - 197 thousand downloads total - 162 stars on GitHub - 1 maintainer
Top 8.0% on bioconductor.org
TrajectoryUtils 1.10.1
Single-Cell Trajectory Analysis Utilities
4 versions - Latest release: 3 months ago - 5 dependent packages - 65.6 thousand downloads total - 1 maintainer
cydar 1.26.0
Using Mass Cytometry for Differential Abundance Analyses
3 versions - Latest release: 6 months ago - 13.2 thousand downloads total - 1 maintainer
alabaster.spatial 1.2.0
Save and Load Spatial 'Omics Data to/from File
3 versions - Latest release: 6 months ago - 1 dependent package - 1.85 thousand downloads total - 1 maintainer
diffHic 1.34.0
Differential Analysis of Hi-C Data
3 versions - Latest release: 6 months ago - 22.9 thousand downloads total - 3 maintainers
alabaster.ranges 1.2.0
Load and Save Ranges-related Artifacts from File
3 versions - Latest release: 6 months ago - 2 dependent packages - 5.42 thousand downloads total - 1 maintainer
alabaster.matrix 1.2.0
Load and Save Artifacts from File
3 versions - Latest release: 6 months ago - 2 dependent packages - 5.74 thousand downloads total - 1 maintainer
alabaster.mae 1.2.0
Load and Save MultiAssayExperiments
3 versions - Latest release: 6 months ago - 1 dependent package - 1.88 thousand downloads total - 1 maintainer
alabaster.vcf 1.2.0
Save and Load Variant Data to/from File
3 versions - Latest release: 6 months ago - 1 dependent package - 1.8 thousand downloads total - 1 maintainer
alabaster.schemas 1.2.0
Schemas for the Alabaster Framework
3 versions - Latest release: 6 months ago - 1 dependent package - 6.05 thousand downloads total - 1 maintainer
alabaster.sce 1.2.0
Load and Save SingleCellExperiment from File
3 versions - Latest release: 6 months ago - 2 dependent packages - 3.03 thousand downloads total - 1 maintainer
alabaster.se 1.2.0
Load and Save SummarizedExperiments from File
3 versions - Latest release: 6 months ago - 4 dependent packages - 5.5 thousand downloads total - 1 maintainer
rebook 1.12.0
Re-using Content in Bioconductor Books
3 versions - Latest release: 6 months ago - 8.22 thousand downloads total - 1 maintainer
alabaster.bumpy 1.2.0
Save and Load BumpyMatrices to/from file
3 versions - Latest release: 6 months ago - 1 dependent package - 1.85 thousand downloads total - 1 maintainer
mumosa 1.10.0
Multi-Modal Single-Cell Analysis Methods
3 versions - Latest release: 6 months ago - 3.74 thousand downloads total - 1 maintainer
alabaster.base 1.2.1
Save Bioconductor Objects To File
3 versions - Latest release: 6 months ago - 11 dependent packages - 6.61 thousand downloads total - 1 maintainer
BumpyMatrix 1.10.0
Bumpy Matrix of Non-Scalar Objects
3 versions - Latest release: 6 months ago - 10 dependent packages - 19.6 thousand downloads total - 1 maintainer
alabaster 1.2.0
Umbrella for the Alabaster Framework
3 versions - Latest release: 6 months ago - 1.32 thousand downloads total - 1 maintainer
alabaster.string 1.2.0
Save and Load Biostrings to/from File
3 versions - Latest release: 6 months ago - 2 dependent packages - 1.99 thousand downloads total - 1 maintainer
screenCounter 1.4.0
Counting Reads in High-Throughput Sequencing Screens
3 versions - Latest release: 5 days ago - 1.22 thousand downloads total - 3 stars on GitHub - 1 maintainer
DelayedRandomArray 1.12.0
Delayed Arrays of Random Values
3 versions - Latest release: 5 days ago - 1 dependent package - 3.54 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 0.6% on bioconductor.org
edgeR 4.2.0
Empirical Analysis of Digital Gene Expression Data in R
14 versions - Latest release: 19 days ago - 181 dependent packages - 3.02 million downloads total - 4 maintainers
Top 2.1% on bioconductor.org
scuttle 1.12.0
Single-Cell RNA-Seq Analysis Utilities
2 versions - Latest release: 7 months ago - 41 dependent packages - 533 thousand downloads total - 1 maintainer
Top 2.1% on bioconductor.org
scran 1.30.2
Methods for Single-Cell RNA-Seq Data Analysis
4 versions - Latest release: 4 months ago - 62 dependent packages - 391 thousand downloads total - 1 maintainer
Top 2.9% on bioconductor.org
metapod 1.12.0
Meta-Analyses on P-Values of Differential Analyses
4 versions - Latest release: 12 days ago - 5 dependent packages - 204 thousand downloads total - 1 maintainer
Top 3.7% on bioconductor.org
InteractionSet 1.32.0
Base Classes for Storing Genomic Interaction Data
3 versions - Latest release: 13 days ago - 23 dependent packages - 109 thousand downloads total - 1 maintainer
Top 4.2% on bioconductor.org
bluster 1.14.0
Clustering Algorithms for Bioconductor
3 versions - Latest release: 13 days ago - 12 dependent packages - 236 thousand downloads total - 1 maintainer
Top 2.4% on bioconductor.org
BiocNeighbors 1.20.2
Nearest Neighbor Detection for Bioconductor Packages
3 versions - Latest release: 4 months ago - 18 dependent packages - 616 thousand downloads total - 1 maintainer
beachmat.hdf5 1.0.0
beachmat bindings for HDF5-backed matrices
1 version - Latest release: 7 months ago - 1 dependent package - 842 downloads total - 1 maintainer
Top 4.3% on bioconductor.org
basilisk 1.16.0
Freezing Python Dependencies Inside Bioconductor Packages
5 versions - Latest release: 13 days ago - 27 dependent packages - 143 thousand downloads total - 24 stars on GitHub - 1 maintainer
ScaledMatrix 1.12.0
Creating a DelayedMatrix of Scaled and Centered Values
3 versions - Latest release: 12 days ago - 5 dependent packages - 505 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 3.0% on bioconductor.org
batchelor 1.20.0
Single-Cell Batch Correction Methods
4 versions - Latest release: 13 days ago - 5 dependent packages - 244 thousand downloads total - 1 maintainer
Top 4.4% on bioconductor.org
csaw 1.38.0
ChIP-Seq Analysis with Windows
4 versions - Latest release: 13 days ago - 8 dependent packages - 72.1 thousand downloads total - 1 maintainer
Top 4.5% on bioconductor.org
basilisk.utils 1.16.0
Basilisk Installation Utilities
4 versions - Latest release: 13 days ago - 2 dependent packages - 125 thousand downloads total - 1 maintainer
Top 2.9% on bioconductor.org
ResidualMatrix 1.14.0
Creating a DelayedMatrix of Regression Residuals
3 versions - Latest release: 13 days ago - 4 dependent packages - 155 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 4.2% on bioconductor.org
dir.expiry 1.12.0
Managing Expiration for Cache Directories
3 versions - Latest release: 13 days ago - 3 dependent packages - 117 thousand downloads total - 1 maintainer
gypsum 1.0.0
Interface to the gypsum REST API
1 version - Latest release: 21 days ago - 1.8 thousand downloads total - 0 stars on GitHub - 1 maintainer
TileDBArray 1.14.0
Using TileDB as a DelayedArray Backend
3 versions - Latest release: 20 days ago - 4.04 thousand downloads total - 10 stars on GitHub - 1 maintainer
alabaster.files 1.0.0
Wrappers to Save Common File Formats
1 version - Latest release: 7 months ago - 695 downloads total - 1 maintainer