Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

bioconductor.org maintainers: Jianhong Ou

dagLogo 1.40.0
dagLogo: a Bioconductor package for visualizing conserved amino acid sequence pattern in groups b...
3 versions - Latest release: 6 months ago - 18.8 thousand downloads total - 1 maintainer
ribosomeProfilingQC 1.14.1
Ribosome Profiling Quality Control
4 versions - Latest release: about 1 month ago - 5.54 thousand downloads total - 1 maintainer
GeneNetworkBuilder 1.44.0
GeneNetworkBuilder: a bioconductor package for building regulatory network using ChIP-chip/ChIP-s...
3 versions - Latest release: 6 months ago - 23.9 thousand downloads total - 1 maintainer
NADfinder 1.26.0
Call wide peaks for sequencing data
3 versions - Latest release: 6 months ago - 9.86 thousand downloads total - 2 maintainers
ATACseqQC 1.26.0
ATAC-seq Quality Control
3 versions - Latest release: 6 months ago - 2 dependent packages - 42.4 thousand downloads total - 1 maintainer
Top 8.8% on bioconductor.org
trackViewer 1.38.2
A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop pl...
4 versions - Latest release: about 1 month ago - 3 dependent packages - 52.1 thousand downloads total - 1 maintainer
InPAS 2.10.0
Identify Novel Alternative PolyAdenylation Sites (PAS) from RNA-seq data
3 versions - Latest release: 6 months ago - 13.9 thousand downloads total - 1 maintainer
Top 3.6% on bioconductor.org
motifStack 1.48.0
Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
3 versions - Latest release: 15 days ago - 10 dependent packages - 106 thousand downloads total - 1 maintainer
Top 3.0% on bioconductor.org
ChIPpeakAnno 3.38.0
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments, or any expe...
4 versions - Latest release: 16 days ago - 8 dependent packages - 267 thousand downloads total - 4 maintainers
hicVennDiagram 1.2.0
Venn Diagram for genomic interaction data
4 versions - Latest release: 19 days ago - 833 downloads total - 0 stars on GitHub - 1 maintainer
ATACseqTFEA 1.6.0
Transcription Factor Enrichment Analysis for ATAC-seq
3 versions - Latest release: 19 days ago - 1.98 thousand downloads total - 0 stars on GitHub - 1 maintainer
enhancerHomologSearch 1.10.0
Identification of putative mammalian orthologs to given enhancer
5 versions - Latest release: 19 days ago - 2.56 thousand downloads total - 0 stars on GitHub - 1 maintainer
GenomicInteractionNodes 1.8.0
A R/Bioconductor package to detect the interaction nodes from HiC/HiChIP/HiCAR data
3 versions - Latest release: 19 days ago - 1.78 thousand downloads total - 0 stars on GitHub - 1 maintainer
scRNAseqApp 1.4.0
A single-cell RNAseq Shiny app-package
4 versions - Latest release: 23 days ago - 1.4 thousand downloads total - 3 stars on GitHub - 1 maintainer