Ecosyste.ms: Packages

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Top 6.7% on bioconductor.org
Top 0.1% dependent packages on bioconductor.org

bioconductor.org : GenomicInteractions

Utilities for handling genomic interaction data

Registry - Source - Documentation - JSON
purl: pkg:bioconductor/GenomicInteractions
Keywords: DataImport, DataRepresentation, HiC, Infrastructure, Software
License: GPL-3.0
Latest release: 6 months ago
First release: 7 months ago
Dependent packages: 7
Downloads: 42,901 total
Stars: 6 on GitHub
Forks: 0 on GitHub
See more repository details: repos.ecosyste.ms
Last synced: 26 days ago

extraChIPs 1.8.1
Additional functions for working with ChIP-Seq data
5 versions - Latest release: 13 days ago - 2 dependent packages - 2.54 thousand downloads total - 7 stars on GitHub - 1 maintainer
sevenC 1.22.0
Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
2 versions - Latest release: 6 months ago - 7.1 thousand downloads total - 11 stars on GitHub - 1 maintainer
CAGEfightR 1.22.0
Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor
2 versions - Latest release: 6 months ago - 1 dependent package - 18.2 thousand downloads total - 8 stars on GitHub - 1 maintainer
Chicago 1.30.0
CHiCAGO: Capture Hi-C Analysis of Genomic Organization
3 versions - Latest release: 6 months ago - 16.7 thousand downloads total - 1 maintainer
HiCDCPlus 1.10.0
Hi-C Direct Caller Plus
3 versions - Latest release: 6 months ago - 4.43 thousand downloads total - 1 maintainer
Top 7.4% on bioconductor.org
ELMER 2.26.0
Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes
3 versions - Latest release: 6 months ago - 38 thousand downloads total - 1 maintainer
spatzie 1.8.0
Identification of enriched motif pairs from chromatin interaction data
3 versions - Latest release: 6 months ago - 2.36 thousand downloads total - 1 maintainer