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Top 0.1% dependent packages on bioconductor.org
bioconductor.org : SeqArray
Data Management of Large-Scale Whole-Genome Sequence Variant Calls
Registry
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Source
- Documentation
- JSON
purl: pkg:bioconductor/SeqArray
Keywords: DataRepresentation, Genetics, Infrastructure, Sequencing, Software, bioinformatics, gds-format, r, snp, snv, wes, wgs
License: GPL-3.0
Latest release: 7 days ago
First release: 7 months ago
Dependent packages: 11
Downloads: 86,576 total
Stars: 42 on GitHub
Forks: 10 on GitHub
Total Commits: 655
Committers: 8
Average commits per author: 81.875
Development Distribution Score (DDS): 0.171
More commit stats: commits.ecosyste.ms
See more repository details: repos.ecosyste.ms
Last synced: 7 days ago
GENESIS 2.34.0
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzi...3 versions - Latest release: 10 days ago - 1 dependent package - 55.1 thousand downloads total - 32 stars on GitHub - 1 maintainer
SNPRelate 1.38.0
Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data4 versions - Latest release: 12 days ago - 11 dependent packages - 175 thousand downloads total - 96 stars on GitHub - 1 maintainer
SeqVarTools 1.42.0
Tools for variant data3 versions - Latest release: 15 days ago - 1 dependent package - 58.6 thousand downloads total - 3 stars on GitHub - 1 maintainer
HIBAG 1.40.0
HLA Genotype Imputation with Attribute Bagging5 versions - Latest release: 15 days ago - 20.1 thousand downloads total - 26 stars on GitHub - 1 maintainer
GBScleanR 1.8.0
Error correction tool for noisy genotyping by sequencing (GBS) data3 versions - Latest release: 20 days ago - 2.17 thousand downloads total - 0 stars on GitHub - 1 maintainer
VariantExperiment 1.18.0
A RangedSummarizedExperiment Container for VCF/GDS Data with GDS Backend4 versions - Latest release: 21 days ago - 5.08 thousand downloads total - 1 stars on GitHub - 1 maintainer
DelayedDataFrame 1.20.0
Delayed operation on DataFrame using standard DataFrame metaphor3 versions - Latest release: 21 days ago - 1 dependent package - 5.97 thousand downloads total - 1 stars on GitHub - 1 maintainer
GDSArray 1.24.0
Representing GDS files as array-like objects3 versions - Latest release: 21 days ago - 3 dependent packages - 10.9 thousand downloads total - 4 stars on GitHub - 1 maintainer
SAIGEgds 2.2.1
Scalable Implementation of Generalized mixed models using GDS files in Phenome-Wide Association S...3 versions - Latest release: 3 months ago - 7.28 thousand downloads total - 7 stars on GitHub - 1 maintainer
VCFArray 1.18.0
Representing on-disk / remote VCF files as array-like objects3 versions - Latest release: 6 months ago - 5.81 thousand downloads total - 1 stars on GitHub - 1 maintainer
ggmanh 1.6.0
Visualization Tool for GWAS Result3 versions - Latest release: 6 months ago - 1 dependent package - 3.27 thousand downloads total - 1 maintainer