Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

Top 4.7% on bioconductor.org
Top 4.7% downloads on bioconductor.org
Top 3.6% dependent packages on bioconductor.org
Top 4.3% forks on bioconductor.org

bioconductor.org : bumphunter

Bump Hunter

Registry - Source - Documentation - JSON
purl: pkg:bioconductor/bumphunter
Keywords: DNAMethylation, Epigenetics, ImmunoOncology, Infrastructure, MultipleComparison, Software
License: Artistic-2.0
Latest release: 6 months ago
First release: 8 months ago
Dependent packages: 15
Downloads: 398,633 total
Stars: 15 on GitHub
Forks: 14 on GitHub
See more repository details: repos.ecosyste.ms
Last synced: 1 day ago

Top 4.3% on bioconductor.org
ChAMP 2.34.0
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
3 versions - Latest release: 26 days ago - 1 dependent package - 117 thousand downloads total - 1 maintainer
coMethDMR 1.8.0
Accurate identification of co-methylated and differentially methylated regions in epigenome-wide ...
3 versions - Latest release: 27 days ago - 2.21 thousand downloads total - 7 stars on GitHub - 1 maintainer
brainflowprobes 1.18.0
Plots and annotation for choosing BrainFlow target probe sequence
3 versions - Latest release: about 1 month ago - 5.01 thousand downloads total - 0 stars on GitHub - 1 maintainer
derfinderPlot 1.38.0
Plotting functions for derfinder
3 versions - Latest release: about 1 month ago - 3 dependent packages - 21.7 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 4.5% on bioconductor.org
derfinder 1.38.0
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via ...
3 versions - Latest release: about 1 month ago - 6 dependent packages - 68.6 thousand downloads total - 42 stars on GitHub - 1 maintainer
Top 1.9% on bioconductor.org
minfi 1.50.0
Analyze Illumina Infinium DNA methylation arrays
3 versions - Latest release: about 1 month ago - 31 dependent packages - 789 thousand downloads total - 58 stars on GitHub - 1 maintainer
dmrseq 1.22.1
Detection and inference of differentially methylated regions from Whole Genome Bisulfite Sequencing
4 versions - Latest release: 3 months ago - 1 dependent package - 17.9 thousand downloads total - 1 maintainer
epimutacions 1.6.1
Robust outlier identification for DNA methylation data
4 versions - Latest release: 6 months ago - 2.28 thousand downloads total - 0 stars on GitHub - 1 maintainer
DAMEfinder 1.14.0
Finds DAMEs - Differential Allelicly MEthylated regions
3 versions - Latest release: 6 months ago - 5.43 thousand downloads total - 9 stars on GitHub - 1 maintainer
methylCC 1.16.0
Estimate the cell composition of whole blood in DNA methylation samples
3 versions - Latest release: 6 months ago - 6.38 thousand downloads total - 20 stars on GitHub - 1 maintainer
Top 8.7% on bioconductor.org
regionReport 1.36.0
Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results
3 versions - Latest release: 6 months ago - 1 dependent package - 24.6 thousand downloads total - 9 stars on GitHub - 1 maintainer
bigmelon 1.28.0
Illumina methylation array analysis for large experiments
3 versions - Latest release: 7 months ago - 12.3 thousand downloads total - 1 maintainer
epivizr 2.32.0
R Interface to epiviz web app
3 versions - Latest release: 7 months ago - 2 dependent packages - 25.5 thousand downloads total - 1 maintainer
epivizrData 1.30.0
Data Management API for epiviz interactive visualization app
3 versions - Latest release: 7 months ago - 3 dependent packages - 15.5 thousand downloads total - 1 maintainer
rnaEditr 1.12.0
Statistical analysis of RNA editing sites and hyper-editing regions
3 versions - Latest release: 7 months ago - 3.35 thousand downloads total - 3 stars on GitHub - 1 maintainer